Biotechnology Commons^™

Alterations Of The Gut Mycobiome In Patients With Ms - A Bioinformatic Approach, Saumya Shah

Honors Scholar Theses

The mycobiome is the fungal component of the gut microbiome and is implicated in several autoimmune diseases. However, its role in multiple sclerosis (MS) has not been studied. We performed descriptive and formal statistical tests using the R language to characterize the gut mycobiome in people with MS (pwMS) and healthy controls. We found that the microbiome composition of multiple sclerosis patients is different from healthy people. The mycobiome had significantly higher alpha diversity and inter-subject variation in pwMS than controls. Additionally, Saccharomyces and Aspergillus were over-represented in pwMS. Different mycobiome profiles, defined as mycotypes, were associated with different bacterial …

Impact Of Angiogenic And Osteogenic Factors In The Presence Of Biodegradable Piezoelectric Films, Jayla Millender

University Scholar Projects

One of the most common causes of bone graft rejection is lack of a vascular network connecting the graft to the existing native tissue – allowing for nutrient flow. Under current grafting techniques, the existing blood vessel network in the patient slowly invades the implant in order to supply the injured site with its necessary nutrients. The purpose of this research is to determine if a synthetic bone graft with a stable microvascular network can be developed in vitro. I hypothesize that the use of indirect angiogenic factors such as sonic hedgehog homolog and hypoxia-inducible factor-1 in combination with the …

Impact Of Angiogenic And Osteogenic Factors In The Presence Of Biodegradable Piezoelectric Films, Jayla Millender

Honors Scholar Theses

One of the most common causes of bone graft rejection is lack of a vascular network connecting the graft to the existing native tissue – allowing for nutrient flow. Under current grafting techniques, the existing blood vessel network in the patient slowly invades the implant in order to supply the injured site with its necessary nutrients. The purpose of this research is to determine if a synthetic bone graft with a stable microvascular network can be developed in vitro. I hypothesize that the use of indirect angiogenic factors such as sonic hedgehog homolog and hypoxia-inducible factor-1 in combination with the …

Single-Fluorophore Sensors For Mechanical Force In Living Cells, Sarah Kricheff

Honors Scholar Theses

Mechanotransduction is the process by which a mechanical stimulus is converted to a cellular signal. This process is heavily influential of cell morphology, differentiation, and behavior. However, altered levels of mechanical stimuli are also found in many pathological contexts. For example, cancerous cells have stiffer surrounding tissue than healthy cells, and research suggests that this alters cell behavior and promotes metastasis. Despite these findings, the cellular processes behind these signaling alterations remain widely unknown. Understanding these cascades is critical, as involved proteins can give us a deeper understanding of the role of mechanotransduction, and certain proteins can potentially be targeted …

An Analysis Of Crispr-Cas Gene Editing In Agriculture, Ashley Laliberte

Honors Scholar Theses

The CRISPR-Cas system is a promising form of gene editing, especially for the agriculture industry. The ability to make single-nucleotide edits within a gene of interest, without the need to introduce foreign DNA, is a powerful tool for designing healthier and more efficient crops and food animals. This system provides opportunity for increased nutritional value, decreased food waste, and more economically and environmentally sustainable food production. Though this biotechnology is facing mechanistic limitations due to off-target effects and inefficient homology-directed repair, vast improvements have already been made to improve its efficacy. The CRISPR-Cas system is already the most advanced form …

Development Of A Sonically Powered Biodegradable Nanogenerator For Bone Regeneration, Avi S. Patel

University Scholar Projects

Background: Reconstruction of bone fractures and defects remains a big challenge in orthopedic surgery. While regenerative engineering has advanced the field greatly using a combination of biomaterial scaffolds and stem cells, one matter of difficulty is inducing osteogenesis in these cells. Recent works have shown electricity’s ability to promote osteogenesis in stem cell lines when seeded in bone scaffolds; however, typical electrical stimulators are either (a) externally housed and require overcomplex percutaneous wires be connected to the implanted scaffold or (b) implanted non-degradable devices which contain toxic batteries and require invasive removal surgeries.

Objective: Here, we establish a biodegradable, piezoelectric …

Setting The Sound Up For Success, Hillary Kenyon

Wrack Lines

Deploying remotely-set disease-resistant oyster seed in biodegradable netting on a natural bed in Connecticut. The eastern oyster, Crassostrea virginica, is a keystone species in Connecticut's coastal environment.

Diffusion Barriers Of The Lateral Ventricular System, Anitha Saravanakumar

Master's Theses

Adult neurogenesis in mammalian brain has become a well-accepted phenomenon. The neural stem cells in the sub ventricular zone (SVZ) along the lateral wall of the lateral ventricle, the largest germinal center of adult neurogenesis, are maintained by the neural stem cell niche. One prominent feature of the niche is its close proximity to the cerebral spinal fluid (CSF). The role of micromolecules (such as ions, water and gases) present in the CSF and diffusing through the lateral ventricular wall and how the stem cell micro-environment is maintained is poorly understood. The cytoarchitecture of the lateral ventricular wall with a …

Out Of Sight, But Not Out Of Mind: A Look At Nanoparticles In The Marine Environment, Evan Ward, John J. Doyle

Wrack Lines

Nanoparticles exist in many products used by humans, such as sunscreens. medications, cosmetics, paints and electronics. But what is the effect of these tiny particles on the ocean or estuarine environment when the sunscreen washes off? This article looks at that question and at shellfish in particular. Evan Ward and John Doyle are marine scientists at UConn.

Characterizing Bentgrass Distribution With Spatial And Biological Data To Support Ecological Risk Assessment In Connecticut, Carol Auer, Collin Ahrens, Jinwon Chung, Thomas Meyer

Plant Science Presentations and Proceedings

Genetically-modified (GM) crops must be assessed before they are released into the environment. Our research examines the potential for gene flow and negative ecological impacts from the release of GM turfgrasses. Gene flow can produce hybrid offspring with transgenes and novel traits that could change the ability of the plant to survive and spread. If hybrid offspring have an advantage in the environment, they could become invasive and/or affect other components of our ecosystems. Creeping bentgrass (Agrostis stolonifera) is a common, non-native turfgrass that is a weed and could hybridize with other Agrostis species. At present, United States Department of …

Ecological Risk Assessment Of Switchgrass (Panicum Virgatum) In Connecticut., Carol Auer, Geoffrey Ecker

Plant Science Presentations and Proceedings

A native of North America, switchgrass (Panicum virgatum) is a hardy rhizomatous perennial with an expansive range. The U.S. Department of Energy has identified switchgrass as a promising biofuel crop for low-input agriculture and marginal lands (Fig. 1). This has prompted research on improvement through genetic modification (GM). Before any new GM crop can be released, regulators must evaluate not only the modified plants, but also potential negative impacts to the environment. For example, hybridization between closely-related species could result in the transfer of GM traits to relatives (gene flow) creating new weeds or invasives. The objective of this research …

Drought And Salinity Tolerance In Common Agrostis Species., Carol Auer, Collin Ahrens

Plant Science Presentations and Proceedings

Our research examines plant gene flow and the impacts from environmental release of genetically-modified plants. Plant gene flow is a natural process that occurs when pollen from one plant lands on the flower of another plant and produces a hybrid offspring. Gene flow can produce hybrid offspring with new traits that could change the ability of the plant to survive and spread. If hybrid offspring have some advantage in the environment, they could become invasive and/or affect other components of our ecosystems. In the near future, the federal government may approve the use of a genetically engineered herbicide-resistant (HR) Agrostis …

If Hybrids Go Wrong: Assessing Potential Environmental Risk From Release Of Herbicide-Resistant Creeping Bentgrass (Agrostis)., Carol Auer, Collin Ahens

Plant Science Presentations and Proceedings

Genetically-modified (GM) plants need to be assessed for their benefits and risks before they are released into the environment. At present, GM grasses are being developed to improve sports turf and biofuels crops (e.g. switchgrass). How will genetic engineering of perennial grasses alter the distribution of these grasses in natural areas and managed landscapes? Can we use research data to predict future gene flow, weediness, or invasion? These are some of the important questions in ecological risk assessment of GM perennial grasses. We have initiated five research projects to characterize gene flow and potential ecological risk from herbicide-resistant (HR) creeping …

Integration Of Gis And Bentgrass Ecology For Ecological Risk Assessment., Carol Auer, Collin Ahrens

Plant Science Presentations and Proceedings

All new technologies carry both benefits and risks. Genetically-modified plants must be assessed before they are released into the environment. Our research examines plant gene flow and the potential impacts from environmental release of genetically-modified plants. Plant gene flow is a natural process that occurs when pollen from one plant lands on the flower of another plant and produces a hybrid offspring. Gene flow can produce hybrid offspring with new traits that could change the ability of the plant to survive and spread. If hybrid offspring have some advantage in the environment, they could become invasive and/or affect other components …

In Vitro Expression And Purification Of Class I Mhc Molecules, Loi Cheng

Honors Scholar Theses

The major histocompatibility complex (MHC) is a gene family responsible for many critical functions of the immune system in most vertebrates. The MHC consists of three classes differentiated by their structure and function, and MHC class I encodes antigen binding proteins as well as chaperone and accessory proteins such as tapasin. The purpose of this project is to reconstitute several human MHC class I molecules in their peptide-filled and peptide-deficient forms, and to purify these proteins for biochemical study. The expressed proteins include wild type and mutant variants of the fusion protein human leukocyte antigen HLA-B*0801-fos, and human beta-2-microglobulin (β2m). …

When Hybrids Go Wrong. How Hybridization Can Create Invasive Species., Carol Auer, Collin Ahrens

Plant Science Presentations and Proceedings

Gene flow is the movement of genes from one plant population to another. Gene flow is a natural process and a part of plant evolution. There are two ways for gene flow to occur in plants. The first is through sexual reproduction – pollen lands on a flower and a viable seed develops. The second method is through dispersal of seeds and/or vegetative plant parts (e.g. stolons, rhizomes). Gene flow can produce hybrid offspring with an increased or decreased ability to survive in the landscape. If hybrid offspring have some advantage in the environment, they could become invasive. This poster …