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Articles 61 - 90 of 10382
Full-Text Articles in Life Sciences
Classification Of Hybrid Chestnut Cultivars (Castanea Sativa) Registered In Türkiye With Artificial Neural Networks, Based On Some Physical Properties Of Their Nuts, Taner Yildiz
Turkish Journal of Agriculture and Forestry
Understanding how the classification and identification of biological species can evaluate improvements in newly developed cultivars, including chestnuts (Castanea sativa), is crucial for product processing and equipment design. To evaluate this, in the present study artificial neural networks (ANNs) were used to characterize four hybrid chestnut cultivars (Macit 55, Akyüz, and Ali Nihat registered in Türkiye and Bouche de Betizac registered in France). A backpropagation neural networks algorithm was used in the ANN approach based on nine physical properties. These properties included shelled nut weight and volume, sphericity, geometric mean diameter, bulk density, surface area, true density, porosity, and length, …
The Effect Of Organic And Chemical Fertilizers On The Activity Of Soil Enzymes In Soils Of Different Compositions, Elif Yağanoğlu, Adi̇l Aydin
The Effect Of Organic And Chemical Fertilizers On The Activity Of Soil Enzymes In Soils Of Different Compositions, Elif Yağanoğlu, Adi̇l Aydin
Turkish Journal of Agriculture and Forestry
In this study, the effects of chemical (20:20:0 compound) and organic (barnyard) fertilizers applied to different textured soils on several soil enzyme (urease, acid phosphatase, alkaline phosphatase, and dehydrogenase) activities were investigated. The research was conducted under greenhouse conditions with (beans and corn) and without crops. Considering the results of the preexperiment analysis of the soils, a 40-g pot–1 of farmyard manure was placed into the pots in which organic fertilizer would be applied in clay and silty loam soils, and a 50-g pot–1 of farmyard manure was added to sandy loam soil; in addition, a 0.25-g pot–1 of 20:20:0 …
Effect Of Nanoparticles On Sugar Beet Cultured In Vitro And Its Betalain And Betaine Production, Nour Alawad, Ömer Can Ünüvar, Songül Gürel, Meli̇h Okcu, Ekrem Gürel
Effect Of Nanoparticles On Sugar Beet Cultured In Vitro And Its Betalain And Betaine Production, Nour Alawad, Ömer Can Ünüvar, Songül Gürel, Meli̇h Okcu, Ekrem Gürel
Turkish Journal of Agriculture and Forestry
Sugar beet (Beta vulgaris L.) is considered one of the most important crops in terms of economics and food. With the widespread applications of nanoparticles (NPs) in plant science that have received great interest due to their amazing results and promising capabilities, the aim of this research was to investigate the effect of TiO2 and ZnO NPs on sugar beet plants cultured in vitro in several respects: seed germination, morphology, chlorophyll a and b contents, carotenoids, and the most important sugar beet metabolites, betaine and betalains. To investigate the effects, four different concentrations of NPs (0, 5, 15, and 25 …
Bioassay-Guided Purification And Identification Of Antimicrobial Compound From Corn Silk Extract And Postharvest Application Against Fusarium Verticillioides On Cherry Tomato, Ummara Khan, Rita-Cindy Aye-Ayire Sedjoah, Yuting Shao, Dyaaaldin Abdalmegeed, Zichao Wu, Zhihong Xin
Bioassay-Guided Purification And Identification Of Antimicrobial Compound From Corn Silk Extract And Postharvest Application Against Fusarium Verticillioides On Cherry Tomato, Ummara Khan, Rita-Cindy Aye-Ayire Sedjoah, Yuting Shao, Dyaaaldin Abdalmegeed, Zichao Wu, Zhihong Xin
Turkish Journal of Agriculture and Forestry
Corn silk (Stigma maydis), the silky hairs on top of maize, is commonly discarded as waste. Despite its traditional medicinal use in countries like China, the United States, France, and Turkey, its phytochemical and pharmacological attributes have received limited study. In this study, the agar well diffusion method was used to evaluate the antimicrobial activity of free and bound crude extracts from cornsilk obtained using different solvents. Compared to the free crude extract, the bound crude extract exhibited greater efficacy against the tested microorganisms. Consequently, sequential fractionation was performed on the bound crude extract, and it was found that the …
Zinc And Manganese Effect Seed Quality And Germination In Common Bean (Phaseolus Vulgaris L.), Mehrdad Yarnia, Masoud Soltani̇ Bouljak, Parisa Bolouri, İnci̇ Tolay
Zinc And Manganese Effect Seed Quality And Germination In Common Bean (Phaseolus Vulgaris L.), Mehrdad Yarnia, Masoud Soltani̇ Bouljak, Parisa Bolouri, İnci̇ Tolay
Turkish Journal of Agriculture and Forestry
Zinc (Zn) and manganese (Mn) are important micronutrients in plant growth and development. In this study, the effect of Zn and Mn sulfate treatments at different growth stages of mother plants in common bean on seed production and germination potential was carried out. Results showed that zinc sulfate (ZnSo4) treatments significantly affected yield and pod number per plant compared to manganese sulfate tetrahydrate (MnSO4) treatments. Treatment in any form or at any stage of growth increased yield and its components in common bean. The highest efficiency of ZnSO4 was obtained in the pod production stage; MnSO4 enjoyed greater efficiency in …
Influence Of High Tunnel Conditions And Cultivars On The Growth, Yield, And Fruit Qualityof Strawberry In Northern Türkiye, Leyla Demi̇rsoy, Derya Misir, Ayşenur Bektaş, Di̇lek Soysal, Adi̇s Li̇zalo, Hüsnü Demi̇rsoy
Influence Of High Tunnel Conditions And Cultivars On The Growth, Yield, And Fruit Qualityof Strawberry In Northern Türkiye, Leyla Demi̇rsoy, Derya Misir, Ayşenur Bektaş, Di̇lek Soysal, Adi̇s Li̇zalo, Hüsnü Demi̇rsoy
Turkish Journal of Agriculture and Forestry
This study was carried out in Samsun, in the northern part of Türkiye. Short-day cultivars Amiga, Fortuna, Rubygem, Festival, and Camarosa and day-neutral cultivars Albion, Monterey, Sweet Ann, and San Andreas were evaluated for harvest period, fruit yield and quality, and vegetative growth under open field and high tunnel conditions. Fortuna, Festival, and Rubygem were the earliest cultivars and Sweet Ann the latest cultivar under both conditions. Harvest started about 1 month earlier under high tunnel conditions due to the higher air and soil temperatures than the open field. The harvest period lasted 16 to 21 weeks in the open …
A Phylogenetic Analysis And Delimitation Of Turanecio (Asteraceae: Senecioneae), Meryem Bozkurt, Tuna Uysal, Ergi̇n Hamzaoğlu
A Phylogenetic Analysis And Delimitation Of Turanecio (Asteraceae: Senecioneae), Meryem Bozkurt, Tuna Uysal, Ergi̇n Hamzaoğlu
Turkish Journal of Botany
Recently, Turanecio Hamzaoğlu was described as a new genus for the scientific world. Turanecio has been distributed as far as Asia, Iran, Caucasus, and Iraq. A phylogenetic analysis based on nrDNA and cpDNA gene regions was performed to determine the position of the genus within the subtribe Adenostylinae. Results from Bayesian and parsimony analyses of the nuclear and chloroplast DNA regions of the subtribe Senecioninae concordantly indicated that it is monophyletic and belongs to the Quadridentate group, with 4-lobed disc flowers. Nuclear DNA data revealed that some of the researched taxa should be transferred to Turanecio and some taxonomical classifications …
A New Species From Türkiye, Centaurea Turhanii (Cardueae, Asteraceae), Tuna Uysal, Meryem Bozkurt, Ergi̇n Hamzaoğlu
A New Species From Türkiye, Centaurea Turhanii (Cardueae, Asteraceae), Tuna Uysal, Meryem Bozkurt, Ergi̇n Hamzaoğlu
Turkish Journal of Botany
In this article, a new cornflower, Centaurea turhanii Uysal & Hamzaoğlu (Asteraceae) from Türkiye was described and reported. Morphological, karyological, and molecular analyses were used to reveal the taxonomic status of the new species with the species thought to be related to taxa. A modified determination key was submitted and its ecology and phenology were given.
Genetic Variation In White Poplar (Populus Alba L.) Populations As Characterized By Ssr Markers, Burcu Uzan Eken, Emrah Kirdök, Ercan Veli̇oğlu, Yelda Özden Çi̇ftçi̇
Genetic Variation In White Poplar (Populus Alba L.) Populations As Characterized By Ssr Markers, Burcu Uzan Eken, Emrah Kirdök, Ercan Veli̇oğlu, Yelda Özden Çi̇ftçi̇
Turkish Journal of Botany
The white poplar (Populus alba L.), which is tolerant to abiotic and biotic stresses, is a tree species that is resilient against changing climatic and environmental conditions, which makes it a suitable candidate for afforestation efforts. However, due to prolonged human intervention associated with the increasing population, the genetic resources of this species are at risk of loss. Additionally, while this species generally reproduces sexually, reproduction clonally via its root suckers has become widespread in some areas. Hence, the aim of this study was to investigate the genetic diversity of white poplar, which is increasingly experiencing genetic diversity loss. Herein, …
A Comprehensive Study On The Molecular Characterization Of Tomato Spotted Wilt Orthotospovirus Isolates And Resistance Genes In Pepper And Tomato, Qurat Ul Ain Sajid, Emi̇nur Elçi̇
A Comprehensive Study On The Molecular Characterization Of Tomato Spotted Wilt Orthotospovirus Isolates And Resistance Genes In Pepper And Tomato, Qurat Ul Ain Sajid, Emi̇nur Elçi̇
Turkish Journal of Botany
Tomato spotted wilt orthotospovirus (TSWV, Orthotospovirus tomatomaculae) resistance genes (Tsw, Sw5) have been identified in pepper and tomato plants. The development of resistant cultivars is one of the popular management strategies for overcoming viral infections. However, the breakdown of resistance genes has been documented from many places where resistant cultivars have been developed. This has mainly been due to the emergence of resistance-breaking (RB) lines because of the consecutive use of these cultivars. The development of these isolates may cause great losses in both tomato and pepper plants in Türkiye. To investigate the incidence of TSWV, 150 symptomatic samples were …
On The Border Of Extinction And Speciation, Polygala Seyfegoluensis (Polygalaceae), A New Species From Marshy Habitat, Central Türkiye: Under The Threat Of Climate Change, Water Retreat, And Subsequent Degradation, Ali̇ Aslan Dönmez, Zübeyde Uğurlu Aydin, İbrahi̇m Sirri Yüzbaşioğlu
On The Border Of Extinction And Speciation, Polygala Seyfegoluensis (Polygalaceae), A New Species From Marshy Habitat, Central Türkiye: Under The Threat Of Climate Change, Water Retreat, And Subsequent Degradation, Ali̇ Aslan Dönmez, Zübeyde Uğurlu Aydin, İbrahi̇m Sirri Yüzbaşioğlu
Turkish Journal of Botany
Polygala seyfegoluensis Dönmez, Uğurlu & Yüzb. (Polygalaceae) is herein described and illustrated as a new species from Kırşehir Province around Seyfe Lake in Central Türkiye. This new species is similar to P. pruinosa and P. supina is distinctly characterized by its prostrate habit, nearly glabrous and smaller flower parts, and an unwinged capsule. A phylogenetic analysis was conducted to show the placement of the new species within selected Polygala taxa using the trnL-F and rbcL markers. Based on the field observation, an evolutionary scenario is proposed for the new species under the driving forces of climate change, the shrinking of …
Dynamics Of Meiobenthic Fauna In A Tropical Sandy Coast (Chennai, Bay Of Bengal) With Reference To The Physicochemical Parameters, Madhavan Kesavaraj, Md Anwar Nawaz, Zahara Tasneem, Mohammed Asjad Shams Tabrez, Kareem Altaff, Mohamed Saquib Naveed
Dynamics Of Meiobenthic Fauna In A Tropical Sandy Coast (Chennai, Bay Of Bengal) With Reference To The Physicochemical Parameters, Madhavan Kesavaraj, Md Anwar Nawaz, Zahara Tasneem, Mohammed Asjad Shams Tabrez, Kareem Altaff, Mohamed Saquib Naveed
Turkish Journal of Zoology
The term “meiobenthos” refers to a diverse community of organisms inhabiting the interstitial spaces between sand grains retained on sieve sizes ranging between 38 to 500 μm. This study investigates the diversity and density of meiobenthic communities across five locations along the Chennai coast. We examined the dominant meiobenthic groups, with nematodes exhibiting high dominance at Napier station (288.6 ± 91.07 ind.10cm²) and harpacticoids dominating at Marina station (449.88 ± 264.3 ind.10cm²). To establish the relationship between meiobenthic organisms and environmental parameters, we analyzed seven physicochemical factors throughout the study period. The results indicate a negative correlation between ammonia, nitrate, …
Coral Cover Percentage And Health Condition In Tioman Island Marine Protected Area, Pahang, Malaysia, Nur Addawiah Mohamad Rodzi, Mohamed Fahmy Yusof, Zaidi Che Cob
Coral Cover Percentage And Health Condition In Tioman Island Marine Protected Area, Pahang, Malaysia, Nur Addawiah Mohamad Rodzi, Mohamed Fahmy Yusof, Zaidi Che Cob
Turkish Journal of Zoology
Continuous evaluation and monitoring of coral percentage cover and health status is critical for enhancing coral reef resilience management. The present study aimed to determine the coverage and coral status at important sites of Tioman Island Marine Park, which include Renggis Island, Tiong Point and Tekek. Surveillance video recording and in situ observation were carried out using the Coral Video Transect (CVT) method, which were analyzed using the Coral Point Count with Excel extension (CPCe) software. The overall health status for the study area was considered as “fair” with 41.61% ± 4.46% of mean live coral coverage. Among the stations …
An Update On The Phylogeny And Biogeographical History Of Rhipicephalus Sanguineus Complex, Olcay Heki̇moğlu
An Update On The Phylogeny And Biogeographical History Of Rhipicephalus Sanguineus Complex, Olcay Heki̇moğlu
Turkish Journal of Zoology
Rhipicephalus sanguineus complex is among the most studied hard tick species due to its worldwide distribution and its ability to transmit several pathogens. In this study, new local data and recent global findings were used to reevaluate the evolutionary history and phylogeny of the R. sanguineus complex. Seventy-nine samples of Rhipicephalus sp., which were collected from 32 different localities of Türkiye and one locality from Northern Cyprus, were analyzed using two mitochondrial (mt 16S rDNA, mt 12S rDNA) and one nuclear (ITS2) markers. The findings from phylogenetic trees indicate the presence of a third genetically distinct lineage of R. sanguineus …
The Range Dynamics Of A Cactophilic Drosophila Species Under Climate Change Scenarios, Banu Şebnem Önder, Utku Perktaş
The Range Dynamics Of A Cactophilic Drosophila Species Under Climate Change Scenarios, Banu Şebnem Önder, Utku Perktaş
Turkish Journal of Zoology
In this study, we evaluated the historical demography of a cactophilic Drosophila species (Drosophila gouveai) based on previously published mitochondrial DNA (mtDNA) data ecological niche modelling. We particularly aimed to test the effect of climate change on the historical demography of D. gouveai during the late Quaternary and the future of the species. For this, we also modelled its host cacti species in its distribution range to reach a more robust biogeographic conclusion. Our results indicate that D. gouveai was as sensitive to climate change as its hosts were. This species experienced an almost complete range shift, range contraction after …
Diet And Reproductive Outputs Of Common Barn-Owl (Tyto Alba) During The Common Vole (Microtus Arvalis) Outbreak And Crash, Gyozo F. Horvath, Adrienn Horváth
Diet And Reproductive Outputs Of Common Barn-Owl (Tyto Alba) During The Common Vole (Microtus Arvalis) Outbreak And Crash, Gyozo F. Horvath, Adrienn Horváth
Turkish Journal of Zoology
In this paper, we investigated the relationship between the breeding parameters and food composition of the common barnowl (Tyto alba) comparing the outbreak and subsequent crash periods of the common vole (Microtus arvalis) as the barn owl’s main prey. For the analyses, data of 29 (2014 outbreak: 6, 2016 crash: 8; 2019 outbreak: 7, 2021 crash: 7) breeding pairs of barn owls were selected. First, we examined the differences between the breeding parameters (clutch size, number of hatchlings and fledglings), the main and alternative prey taxa (common vole and Apodemus genus), the two derived indices (trophic level index, Microtinae/Murinae ratio) …
Vigilance Behavior Of Common Crane Grus Grus In Flocks During Spring, Summer, And Autumn, Kristina Kondrakova, Alexander Sharikov
Vigilance Behavior Of Common Crane Grus Grus In Flocks During Spring, Summer, And Autumn, Kristina Kondrakova, Alexander Sharikov
Turkish Journal of Zoology
Vigilance is a key behavioral element aimed to detect potential predators or rivals. In this study, we examined the vigilance levels of common cranes that exhibit flocking behavior during the spring, summer, and autumn seasons. We considered the influence of both social (age, presence of offspring, and flock size) and environmental factors (habitat type, time of day, and study period). Parents allocated more time for vigilance than nonparents and juveniles. The alertness of nonparents was lower in flocks of size 51–150 individuals compared to flocks under 50 and over 150 birds. Juveniles increased their vigilance at the end of the …
Can Wildlife Mortality On A Local Road Tell Something General? An Answer From A Protected Area In South-Western Romania, Diana Cupşa, Severus Daniel Covaciu Marcov, Robert Liviu Mihai Rengle, Amalia Raluca Dumbrava, Sára Ferenti, Adriana Petruş Vancea
Can Wildlife Mortality On A Local Road Tell Something General? An Answer From A Protected Area In South-Western Romania, Diana Cupşa, Severus Daniel Covaciu Marcov, Robert Liviu Mihai Rengle, Amalia Raluca Dumbrava, Sára Ferenti, Adriana Petruş Vancea
Turkish Journal of Zoology
Between June 2020 and May 2021, we studied the fauna road mortality on a recently asphalted local road in a protected area in southwestern Romania (Iron Gates Natural Park–IGNP). Despite our expectation of reduced road mortality because of the very low traffic (3.97 cars/hour), numerous animals belonging to a high number of taxa were killed. Animals were killed throughout the entire year, even amphibians in the winter months, which normally should hibernate in that period. Road mortality differences between periods and sectors were obvious. Plant assemblages near the road influence the composition and intensity of road mortality. Diverse habitats near …
On The Oviposition Of Homonota Aff. Darwinii In The Puna Region Of The Central Andes Of Argentina, Franco Valdez Ovallez, Rodrigo Gómez Alés, Rodrigo Nieva Cocilio, Tomás Martínez, Juan Carlos Acosta, José Villavicencio, Graciela Blanco
On The Oviposition Of Homonota Aff. Darwinii In The Puna Region Of The Central Andes Of Argentina, Franco Valdez Ovallez, Rodrigo Gómez Alés, Rodrigo Nieva Cocilio, Tomás Martínez, Juan Carlos Acosta, José Villavicencio, Graciela Blanco
Turkish Journal of Zoology
Communal nest egg-laying refers to females laying their eggs with those of their conspecifics under or within artificial or natural structures. Homonota aff. darwinii is a recently discovered species that has not yet been formally described. The objective of this work is to characterise the oviposition of this species in the Puna region in the Central Andes of Argentina. We recorded the type and surface of the rocks where the eggs were laid, the temperature of the substrate, and the temperature of the rock surface facing the substrate. In addition, we recorded the daily temperature variation that a randomly selected …
The Association Between Clai Polymorphism And Hygienic Behavior In Apis Mellifera, İnci̇ Şahi̇n Negi̇ş, Mustafa Ki̇bar, İbrahi̇m Ayteki̇n
The Association Between Clai Polymorphism And Hygienic Behavior In Apis Mellifera, İnci̇ Şahi̇n Negi̇ş, Mustafa Ki̇bar, İbrahi̇m Ayteki̇n
Turkish Journal of Zoology
Hygienic behavior represents one of the most prominent disease resistance mechanisms developed by honeybees. This behavior is known to be influenced by the genotype and environmental factors. Therefore, this study aimed to investigate the effect of SNP-8 polymorphism and environmental factors on hygienic behavior in different Apis mellifera breeds. A total of fourteen colonies and 148 bees from seven different bee breeds were used for the Pin-killed Brood Assay (PKB) test and PCR-RFLP analysis, respectively. The PKB assay revealed a wide range of hygienic behavior, spanning from 68% to 100% across the fourteen colonies. The frequencies of the H (High) …
Molecular Characterization Of Fecundity-Related Gene Regions In Some Of Türkiye’S Native Sheep Breeds, Ramazan Aymaz, Fulya Özdi̇l, Yalçın Yaman
Molecular Characterization Of Fecundity-Related Gene Regions In Some Of Türkiye’S Native Sheep Breeds, Ramazan Aymaz, Fulya Özdi̇l, Yalçın Yaman
Turkish Journal of Veterinary & Animal Sciences
In this study, the BMP15 and GDF9 gene regions were examined through DNA sequencing in some native sheep breeds of Türkiye (Kıvırcık, Karacabey Merino, Chios, Gökçeada, Çine Çaparı, Awassi, and Karakacan). In the BMP15 exon 2 region, two single nucleotide polymorphisms (SNPs) were identified: one synonymous SNP, P248P (proline/proline), and one nonsynonymous SNP, L251P (leucine/proline), resulting in a missense mutation. In the GDF9 exon 1 region, only a nonsynonymous SNP, R87H (histidine/ arginine), was found. In the GDF9 exon 2 region, four SNPs were identified: two nonsynonymous SNPs, E241K (glutamate/lysine) and V332I (valine/isoleucine), and two synonymous SNPs, L159L (leucine/leucine) and …
Behavioral Activity Budget Of Grower Beetal Kids Offered Total Mixed Ration Under Stall-Fed System, Priya Dhattarwal, Mandeep Singla, Sandeep Kaswan, Ravinder Singh Grewal, Neeraj Kashyap, Dalpat Singh Malik
Behavioral Activity Budget Of Grower Beetal Kids Offered Total Mixed Ration Under Stall-Fed System, Priya Dhattarwal, Mandeep Singla, Sandeep Kaswan, Ravinder Singh Grewal, Neeraj Kashyap, Dalpat Singh Malik
Turkish Journal of Veterinary & Animal Sciences
This study investigates the behavioral activities of grower Beetal kids fed in a conventional method-control group manner orgiven total mixed ration (TMR) (i.e. hay-based - T1 and green fodder-based - T2). Twenty-four weaned Beetal kids were enrolled andrandomly distributed into 3 groups based on their body weight, sex, and age. Behavioral observations were recorded 30 min after givingexperimental ration to the kids using the scan sampling method for 1 h, which inferred time spent eating normally, eating with forelegson the cage, and eating with forelegs on the feeders; standing idle and urination were significantly higher in the control group than …
Identification Of Dermatophytes And Comparative Efficacy Of Topical Antifungals Fortreating Canine Dermatophytosis, Arun Prakash Vadakkoot, Rathish Ramachandran Latha, Neeraja Eramthottil, Lijo John, Bipin Kuriyedath Chitharalil, Deepa Padinjare Meleppat
Identification Of Dermatophytes And Comparative Efficacy Of Topical Antifungals Fortreating Canine Dermatophytosis, Arun Prakash Vadakkoot, Rathish Ramachandran Latha, Neeraja Eramthottil, Lijo John, Bipin Kuriyedath Chitharalil, Deepa Padinjare Meleppat
Turkish Journal of Veterinary & Animal Sciences
Dermatophytosis is a potentially zoonotic superficial skin infection caused by keratinophilic fungi. Identification ofdermatophytes aids in understanding the epidemiology of infections and finding out better treatment modalities. The study aimed toidentify dermatophytes in dogs and compare the effectiveness of three different topical drugs for treating dermatophytosis. Molecularidentification of dermatophyte isolates obtained on culturing was done by restriction fragment length polymorphism of the ampliconobtained by polymerase chain reaction of the Internal Transcribed Spacer (ITS) region of the recombinant DNA. Thirty of the positivecases were divided into three groups, Group I was treated with shampoo containing 2% each of miconazole chlorhexidine, Group …
The Stereological And Morphometrical Investigation Of Pars Lumbalis Of The Spinal Cord Innew Zealand Rabbit, Berna Duman, İftar Gürbüz
The Stereological And Morphometrical Investigation Of Pars Lumbalis Of The Spinal Cord Innew Zealand Rabbit, Berna Duman, İftar Gürbüz
Turkish Journal of Veterinary & Animal Sciences
In the study, 12 (6 females, 6 males) healthy adult New Zealand rabbits were used to examine the morphometrical andstereological values. White matter, gray matter and total segment volume of the segments in the pars lumbalis were calculated byCavalieri’s principle. The findings were grouped according to sexand statistically evaluated. As a result, 38% of the length of the spinalcord in rabbits belonged to the pars lumbalis. The morphometric parameters were not statistically different between male and femalerabbits (p > 0.05). The segment with the biggest volume was L5. White matter’s greatest volume was the L4 segment. The volume of graymatter was …
Comparison Of Nonlinear Models For Predicting Live Weight Growth Curves In Lambproduction Of Kıvırcık And Karacabey Merino, Vasfi̇ye Kader Esen, Orhan Karadağ, Cengi̇z Elmaci, Seli̇m Esen
Comparison Of Nonlinear Models For Predicting Live Weight Growth Curves In Lambproduction Of Kıvırcık And Karacabey Merino, Vasfi̇ye Kader Esen, Orhan Karadağ, Cengi̇z Elmaci, Seli̇m Esen
Turkish Journal of Veterinary & Animal Sciences
To achieve sustainable lamb production, it is crucial to determine the optimal slaughter age for maximum economic efficiencyand have a comprehensive understanding of breed characteristics. This study focuses on evaluating different nonlinear models todetermine the optimal slaughter age for Karacabey Merino and Kıvırcık lambs, renowned for their early development and superiormeat quality, respectively. The dataset comprised age-related live weight data from 98 lambs, including 36 female and 15 male Kıvırcıklambs, as well as 33 female and 14 male Karacabey Merino lambs. Six models, namely, negative exponential, Brody, Gompertz, logistic,Bertalanffy, and Richards were utilized to analyze the data. The model parameters …
Compcorona: A Web Application For Comparative Transcriptome Analyses Ofcoronaviruses Reveals Sars-Cov-2-Specific Host Response, Rana Sali̇hoğlu, Fati̇h Saraçoğlu, Mustafa Si̇bai̇, Tali̇p Zengi̇n, Başak Abak Masud, Onur Karasoy, Tuğba Önal Süzek
Compcorona: A Web Application For Comparative Transcriptome Analyses Ofcoronaviruses Reveals Sars-Cov-2-Specific Host Response, Rana Sali̇hoğlu, Fati̇h Saraçoğlu, Mustafa Si̇bai̇, Tali̇p Zengi̇n, Başak Abak Masud, Onur Karasoy, Tuğba Önal Süzek
Turkish Journal of Biology
Background/aim: Understanding the mechanism of host transcriptomic response to infection by the SARS-CoV-2 virus is crucial, especially for patients suffering from long-term effects of COVID-19, such as long COVID or pericarditis inflammation, potentially linked to side effects of the SARS-CoV-2 spike proteins. We conducted comprehensive transcriptome and enrichment analyses on lung and peripheral blood mononuclear cells (PBMCs) infected with SARS-CoV-2, as well as on SARS-CoV and MERS-CoV, to uncover shared pathways and elucidate their common disease progression and viral replication mechanisms. Materials and methods: We developed CompCorona, the first interactive online tool for visualizing gene response variance among the family …
Physicochemical Differences Between Camelid Single-Domain Antibodies And Mammalian Antibodies, Nazli Eda Eski̇er, Doğa Eski̇er, Esi̇n Fi̇ruzan, Si̇bel Kalyoncu
Physicochemical Differences Between Camelid Single-Domain Antibodies And Mammalian Antibodies, Nazli Eda Eski̇er, Doğa Eski̇er, Esi̇n Fi̇ruzan, Si̇bel Kalyoncu
Turkish Journal of Biology
Background/aim: In recent years, single-domain antibodies, also known as nanobodies, have emerged as an alternative to full immunoglobulin Gs (IgGs), due to their various advantages including increased solubility, faster clearance, and cheaper production. Nanobodies are generally derived from the variable domain of the camelid heavy-chain-only immunoglobulin Gs (hcIgGs). Due to the high sequence homology between variable heavy chains of camelids (VHHs) and humans (VHs), hcIgGs are ideal candidates for nanobody development. However, further examination is needed to understand the structural differences between VHs and VHHs. This analysis is essential for nanobody engineering to mitigate potential immunogenicity while preserving stability, functionality, …
Deep Learning In Bioinformatics, Malik Yousef, Jens Allmer
Deep Learning In Bioinformatics, Malik Yousef, Jens Allmer
Turkish Journal of Biology
Deep learning is a powerful machine learning technique that can learn from large amounts of data using multiple layers of artificial neural networks. This paper reviews some applications of deep learning in bioinformatics, a field that deals with analyzing and interpreting biological data. We first introduce the basic concepts of deep learning and then survey the recent advances and challenges of applying deep learning to various bioinformatics problems, such as genome sequencing, gene expression analysis, protein structure prediction, drug discovery, and disease diagnosis. We also discuss future directions and opportunities for deep learning in bioinformatics. We aim to provide an …
Svm-Do: Identification Of Tumor-Discriminating Mrna Signatures Via Support Vectormachines Supported By Disease Ontology, Mustafa Erhan Özer, Pemra Özbek Sarica, Kazim Yalçin Arğa
Svm-Do: Identification Of Tumor-Discriminating Mrna Signatures Via Support Vectormachines Supported By Disease Ontology, Mustafa Erhan Özer, Pemra Özbek Sarica, Kazim Yalçin Arğa
Turkish Journal of Biology
Background/aim: The complicated nature of tumor formation makes it difficult to identify discriminatory genes. Recently, transcriptome-based supervised classification methods using support vector machines (SVMs) have become popular in this field. However, the inclusion of less significant variables in the construction of classification models can lead to misclassification. To improve model performance, feature selection methods such as enrichment analysis can be used to extract useful variable sets. The detection of genes that can discriminate between normal and tumor samples in the association of cancer and disease remains an area of limited information. We therefore aimed to discover novel and practical sets …
Stemnesscore: An R Package To Estimate The Stemness Of Glioma Cancer Cells At Single-Cell Resolution, Necla Koçhan, Yavuz Oktay, Gökhan Karakülah
Stemnesscore: An R Package To Estimate The Stemness Of Glioma Cancer Cells At Single-Cell Resolution, Necla Koçhan, Yavuz Oktay, Gökhan Karakülah
Turkish Journal of Biology
Background/aim: Glioblastoma is the most heterogeneous and the most difficult-to-treat type of brain tumor and one of the deadliest among all cancers. The high plasticity of glioma cancer stem cells and the resistance they develop against multiple modalities of therapy, along with their high heterogeneity, are the main challenges faced during treatment of glioblastoma. Therefore, a better understanding of the stemness characteristics of glioblastoma cells is needed. With the development of various single-cell technologies and increasing applications of machine learning, indices based on transcriptomic and/or epigenomic data have been developed to quantitatively measure cellular states and stemness. In this study, …