Accelerated Evolution Of Sars-Cov-2 In Free-Ranging White-Tailed Deer,
2023
The Ohio State University
Accelerated Evolution Of Sars-Cov-2 In Free-Ranging White-Tailed Deer, Dillon S. Mcbride, Sofya K. Garushyants, John Franks, Andrew F. Magee, Steven H. Overend, Devra Huey, Amanda M. Williams, Seth A. Faith, Ahmed Kandeil, Sanja Trifkovic, Lance Miller, Trushar Jeevan, Anami Patel, Jacqueline M. Nolting, Michael J. Tonkovich, J. Tyler Genders, Andrew J. Montoney, Kevin Kasnyik, Timothy J. Linder, Sarah N. Bevins, Julianna B. Lenoch, Jeffrey C. Chandler, Thomas J. Deliberto, Eugene V. Koonin, Marc A. Suchard, Philippe Lemey, Richard J. Webby, Martha I. Nelson, Andrew S. Bowman
USDA Wildlife Services - Staff Publications
The zoonotic origin of the COVID-19 pandemic virus highlights the need to fill the vast gaps in our knowledge of SARS-CoV-2 ecology and evolution in non-human hosts. Here, we detected that SARS-CoV-2 was introduced from humans into white-tailed deer more than 30 times in Ohio, USA during November 2021-March 2022. Subsequently, deer-to-deer transmission persisted for 2–8 months, disseminating across hundreds of kilometers. Newly developed Bayesian phylogenetic methods quantified how SARS-CoV-2 evolution is not only three-times faster in white-tailed deer compared to the rate observed in humans but also driven by different mutational biases and selection pressures. The long-term effect of …
Rapid Evolution Of A(H5n1) Influenza Viruses After Intercontinental Spread To North America,
2023
St. Jude Children's Research Hospital
Rapid Evolution Of A(H5n1) Influenza Viruses After Intercontinental Spread To North America, Ahmed Kandeil, Christopher Patton, Jeremy C. Jones, Trushar Jeevan, Walter N. Harrington, Sanja Trifkovic, Jon P. Seiler, Thomas Fabrizio, Karlie Woodard, Jasmine C. Turner, Jeri Carol Crumpton, Lance Miller, Adam Rubrum, Jennifer Debeauchamp, Charles J. Russell, Elena A. Govorkova, Peter Vogel, Mia Kim-Torchetti, Yohannes Berhane, David Stallknecht, Rebecca Poulson, Lisa Kercher, Richard J. Webby
USDA Wildlife Services - Staff Publications
Highly pathogenic avian influenza A(H5N1) viruses of clade 2.3.4.4b underwent an explosive geographic expansion in 2021 among wild birds and domestic poultry across Asia, Europe, and Africa. By the end of 2021, 2.3.4.4b viruses were detected in North America, signifying further intercontinental spread. Here we show that the western movement of clade 2.3.4.4b was quickly followed by reassortment with viruses circulating in wild birds in North America, resulting in the acquisition of different combinations of ribonucleoprotein genes. These reassortant A(H5N1) viruses are genotypically and phenotypically diverse, with many causing severe disease with dramatic neurologic involvement in mammals. The proclivity of …
Reimagining Large River Management Using The Resist–Accept–Direct (Rad) Framework In The Upper Mississippi River,
2023
Minnesota Department of Natural Resources
Reimagining Large River Management Using The Resist–Accept–Direct (Rad) Framework In The Upper Mississippi River, Nicole K. Ward, Abigail J. Lynch, Erik A. Beever, Joshua Booker, Kristen L. Bouska, Holly Embke, Jeffrey N. Houser, John F. Kocik, Joshua Kocik, David J. Lawrence, Mary Grace Lemon, Doug Limpinsel, Madeline R. Magee, Bryan M. Maitland, Owen Mckenna, Andrew Meier, John M. Morton, Jeffrey D. Muehlbauer, Robert Newman, Devon C. Oliver, Heidi M. Rantala, Greg G. Sass, Aaron Shultz, Laura M. Thompson, Jennifer L. Wilkening
Papers in Natural Resources
Background: Large-river decision-makers are charged with maintaining diverse ecosystem services through unprecedented social-ecological transformations as climate change and other global stressors intensify. The interconnected, dendritic habitats of rivers, which often demarcate jurisdictional boundaries, generate complex management challenges. Here, we explore how the Resist–Accept–Direct (RAD) framework may enhance large-river management by promoting coordinated and deliberate responses to social-ecological trajectories of change. The RAD framework identifies the full decision space of potential management approaches, wherein managers may resist change to maintain historical conditions, accept change toward different conditions, or direct change to a specified future with novel conditions. In the Upper Mississippi …
Aquaculture Governance: Five Engagement Arenas For Sustainability Transformation,
2023
Virginia Institute of Marine Science
Aquaculture Governance: Five Engagement Arenas For Sustainability Transformation, Darien D. Mizuta, Stefan Partelow
VIMS Articles
A greater focus on governance is needed to facilitate effective and substantive progress toward sustainability transformations in the aquaculture sector. Concerted governance efforts can help move the sector beyond fragmented technical questions associated with intensification and expansion, social and environmental impacts, and toward system-based approaches that address interconnected sustainability issues. Through a review and expert-elicitation process, we identify five engagement arenas to advance a governance agenda for aquaculture sustainability transformation: (1) setting sustainability transformation goals, (2) cross-sectoral linkages, (3) land–water–sea connectivity, (4) knowledge and innovation, and (5) value chains. We then outline the roles different actors and modes of …
Interactions Between Sediment Mechanical Structure And Infaunal Community Structure Following Physical Disturbance,
2023
University of South Alabama
Interactions Between Sediment Mechanical Structure And Infaunal Community Structure Following Physical Disturbance, William Cyrus Roger Clemo
Theses and Dissertations
Shallow, river-influenced coastal sediments are important for global carbon storage and nutrient cycling and provide a habitat for diverse communities of invertebrates (infauna). Elevated bed shear stress from extreme storms can resuspend, transport, and deposit sediments, disrupting the cohesive structure of muds, and sorting and depositing sand eroded from beaches. These physical disruptions can also resuspend or smother infauna, decreasing abundances and changing community structure. Infaunal activities such as burrowing, tube construction, and feeding can impact sediment structure and stability. However, little is known about how physical disturbance impacts short and long-term sediment habitat suitability and whether disturbance-tolerant infauna influence …
A Multi-Regional Assessment Of Eastern Whip-Poor-Will (Antrostomus Vociferus) Occupancy In Managed And Unmanaged Forests Using Autonomous Recording Units,
2023
University of Massachusetts Amherst
A Multi-Regional Assessment Of Eastern Whip-Poor-Will (Antrostomus Vociferus) Occupancy In Managed And Unmanaged Forests Using Autonomous Recording Units, Jeffery T. Larkin
Masters Theses
State and federal agencies spend considerable time and resources to enhance and create habitat for wildlife. Understanding how target and non-target species respond to these efforts can help direct the allocation of limited conservation resources. However, monitoring species response to habitat management comes with several logistical challenges that are exacerbated as the area of geographic focus increases. I used autonomous recording units (ARUs) to mitigate these challenges when assessing Eastern Whip-poor-will (Antrostomus vociferus) response to forest management. I deployed 1,265 ARUs across managed and unmanaged public and private forests from western North Carolina to southern Maine. I then …
Impacts Of Forest Fire Carbon Emission And Mitigation Strategies,
2023
Institutes of Applied Ecology, Chinese Academy of Sciences, Shenyang 110016, China
Impacts Of Forest Fire Carbon Emission And Mitigation Strategies, Zhihua Liu, Hongshi He, Wenru Xu, Yu Liang, Jiaojun Zhu, Geoff G. Wang, Wei Wei, Zifa Wang, Yongming Han
Bulletin of Chinese Academy of Sciences (Chinese Version)
Between 2000 and 2020, global wildfires contributed to approximately 7.32 billion metric tons of carbon dioxide (CO2) emissions, accounting for about 18.5% of CO2 emissions released from fossil fuels. Forest fires alone contributed to around 20% of these wildfire emissions, approximately 1.5 billion metric tons of CO2. Due to climate change and human activities, carbon emissions from forest fires are on the rise. For example, the 2023 Canadian fires have emitted 1.268 billion metric tons of CO2 up to August 29th. Despite the simultaneous increase in forest area and volume, the frequency and extent of forest fires have significantly decreased …
Comprehensive Atmospheric And Environmental Observations In The Himalayan Region Advances Development Of Earth System Science On The Tibetan Plateau,
2023
Key Laboratory of Tibetan Plateau Earth System, Environment and Resources, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China
Qomolangma Station for Atmospheric and Environmental Observation and Research, Chinese Academy of Sciences, Shigatse 858200, China
Comprehensive Atmospheric And Environmental Observations In The Himalayan Region Advances Development Of Earth System Science On The Tibetan Plateau, Weiqiang Ma, Yaoming Ma, Zhipeng Xie, Xuelong Chen, Binbin Wang, Cunbo Han, Maoshan Li, Lei Zhong, Fanglin Sun, Zhongyan Wang, Zhenhua Xi, Lian Liu, Bin Ma, Wei Hu
Bulletin of Chinese Academy of Sciences (Chinese Version)
The Himalayan region, represented by Mount Qomolangma, is not only a typical area where special atmospheric processes on the Tibetan Plateau (TP) are concentrated, but also an important research area for climate, ecology, and environmental changes. The Qomolangma Station for Atmospheric and Environmental Observation and Research, Chinese Academy of Sciences (abbreviated as QOMS) is located in the core area of Mount Qomolangma National Nature Reserve. It is dedicated to studying the complex terrain mountain atmospheric processes and environmental changes of the Third Pole of the Earth, focusing on the land-atmosphere interaction process on the TP under the background of climate …
The Qomolangma Station For Atmospheric And Environmental Observation And Research, Chinese Academy Of Sciences,
2023
Chinese Academy of Sciences
The Qomolangma Station For Atmospheric And Environmental Observation And Research, Chinese Academy Of Sciences, Institute Of Tibetan Plateau Research Chinese Academy Of Sciences
Bulletin of Chinese Academy of Sciences (Chinese Version)
No abstract provided.
Strengthening Ecological Protection And Green Development In Pearl River Basin To Support Construction Of Guangdong-Hong Kong-Macao Greater Bay Area,
2023
State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
Strengthening Ecological Protection And Green Development In Pearl River Basin To Support Construction Of Guangdong-Hong Kong-Macao Greater Bay Area, Bojie Fu, Guangqing Huang, Hong'ou Zhang, Junze Zhang
Bulletin of Chinese Academy of Sciences (Chinese Version)
The Pearl River is the largest river flowing into the South China Sea in China. The unique natural environmental characteristics and geographical location make the Pearl River Basin (PRB) rich in natural resources and huge development potential, and it has an important strategic position in the construction of China’s ecological security system and national economic development planning. At present, the upper and middle reaches of the PRB consist of crucial part of China’s strategic pattern of ecological security, and the lower reach is the Guangdong-Hong Kong-Macao Greater Bay Area. However, influenced by multiple factors such as regional resource endowment and …
Influences On Participation In The National Flood Insurance Program’S Community Rating System In Coastal Counties In Louisiana, Mississippi, Alabama, And Florida,
2023
Louisiana State University
Influences On Participation In The National Flood Insurance Program’S Community Rating System In Coastal Counties In Louisiana, Mississippi, Alabama, And Florida, Jennifer E. Argote
LSU Doctoral Dissertations
The National Flood Insurance Program provides an incentive-based program, the Community Rating System (“CRS”), to encourage communities to improve their hazard mitigation protocols to better protect against and prevent flood-related hazards. This dissertation analyzes factors that influence participation and points scored within the CRS to gain an understanding of the conditions under which communities are willing and able to take advantage of an incentive-based flood hazard mitigation program. It also includes an analysis of survey responses from 41 coastal county floodplain and CRS managers to gauge their opinions on the CRS and how it can be improved to better serve …
Utahns Strongly Support Renewable Energy Sources Such As Solar And Wind,
2023
Utah State University
Utahns Strongly Support Renewable Energy Sources Such As Solar And Wind, Elizabeth Brunner, Stacia Ryder
Utah People and Environment Poll (UPEP)
Utah was the fastest-growing state in the nation by population between 2010 and 2020.1 This growing population is bringing increased demand for energy. The build out of Utah's electric vehicle (EV) infrastructure, with the state aiming to site electric vehicle charging stations at least every 50 miles along its interstate highway system by the end of 2025, will also increase energy demand. This growth will equate to increased carbon emissions if Utah does not change its electricity mix, which is currently composed of primarily carbon-emitting sources. As of 2022 (see Figure 1), 53% of Utah's total electricity net generation …
H5n1 Highly Pathogenic Avian Influenza Clade 2.3.4.4b In Wild And Domestic Birds: Introductions Into The United States And Reassortments, December 2021–April 2022,
2023
USDA Agricultural Research Service
H5n1 Highly Pathogenic Avian Influenza Clade 2.3.4.4b In Wild And Domestic Birds: Introductions Into The United States And Reassortments, December 2021–April 2022, Sungsu Youk, Mia Kim Torchetti, Kristina Lantz, Julianna B. Lenoch, Mary Lea Killian, Christina Leyson, Sarah N. Bevins, Krista Dilione, Hon S. Ip, David E. Stallknecht, Rebecca L. Poulson, David L. Suarez, David E. Swayne, Mary J. Pantin-Jackwood
USDA Wildlife Services - Staff Publications
Highly pathogenic avian influenza viruses (HPAIVs) of the A/goose/Guangdong/1/1996 lineage H5 clade 2.3.4.4b continue to have a devastating effect on domestic and wild birds. Full genome sequence analyses using 1369 H5N1 HPAIVs detected in the United States (U.S.) in wild birds, commercial poultry, and backyard flocks from December 2021 to April 2022, showed three phylogenetically distinct H5N1 virus introductions in the U.S. by wild birds. Unreassorted Eurasian genotypes A1 and A2 entered the Northeast Atlantic states, whereas a genetically distinct A3 genotype was detected in Alaska. The A1 genotype spread westward via wild bird migration and reassorted with North American …
Belowground Growth Strategies Of Native And Invasive Rhizomatous Perennial Grasses In Response To Precipitation Variability, Clipping, And Competition,
2023
La Trobe University
Belowground Growth Strategies Of Native And Invasive Rhizomatous Perennial Grasses In Response To Precipitation Variability, Clipping, And Competition, Surendra Bam, Jacqueline P. Ott, Jack Butler, Lan Xu
Natural Resource Management Faculty Publications
Invasive clonal species may exhibit different growth strategies than their native clonal competitors. In this study, we examined the spatial distribution of tiller outgrowth and the bud bank by comparing the investment in phalanx versus guerilla growth of a native and invasive perennial grass in North America. We also examined the efect of altered precipitation frequency, clipping, and competition on their clonal growth strategies. Investment in phalanx and guerilla growth was assessed by examining live propagule and tiller production from the plant crown versus its rhizomes. Although invasive Bromus inermis and native Pascopyrum smithii exhibited similar clonal growth strategies as …
Prioritization Of Scientific Sources Of Water Information: The Effect Knowledge, Beliefs, And Political Identity,
2023
University of Florida
Prioritization Of Scientific Sources Of Water Information: The Effect Knowledge, Beliefs, And Political Identity, Sadie Hundemer
Journal of Applied Communications
Scientists are reported to be more trusted than other information sources; yet, on essential water facts, people sometimes reject what they perceive water scientists to believe in favor of other belief determinants. This study examines the factors that affect the difference in people's stated willingness to reconsider their water beliefs in response to information provided by scientists relative to information provided by other sources. Regression analysis of responses provided by 806 Florida and Georgia residents found water science knowledge to be a consistently strong influencer of the gap in reliance on scientific information providers relative to other sources. This result …
A Citizen Science Experiment: How Well Do Park Visitors Identify Wetland Health?,
2023
University of Louisville
A Citizen Science Experiment: How Well Do Park Visitors Identify Wetland Health?, Madison Cicha, Kassidy Haynes, Andrew Mehring, Mark Tierney, Andrea Gaughan Phd
The Cardinal Edge
Citizen science refers to a discipline of scientific projects that utilize public participation and collaboration to complete or supplement a collected data set. Our study as a whole aims to assess the greenhouse gas (GHG) source-sink status of small, constructed wetlands in Kentucky through field and remotely sensed data. Additional facets of the project include evaluating the influence of the primary producer community on GHG uptake and emissions, and our ability to identify healthy small wetlands from science and community-based perspectives. Specifically, the citizen science aspect intends to assess both (1) gaps between knowledge of the general public regarding wetland …
Antiviral Susceptibility Of Clade 2.3.4.4b Highly Pathogenic Avian Influenza A(H5n1) Viruses Isolated From Birds And Mammals In The United States, 2022,
2023
National Center for Immunization and Respiratory Diseases
Antiviral Susceptibility Of Clade 2.3.4.4b Highly Pathogenic Avian Influenza A(H5n1) Viruses Isolated From Birds And Mammals In The United States, 2022, Ha T. Nguyen, Anton Chesnokov, Juan De La Cruz, Philippe Noriel Q. Pascua, Vasiliy P. Mishin, Yunho Jang, Joyce Jones, Han Di, Andrei A. Ivashchenko, Mary Lea Killian, Mia K. Torchetti, Kristina Lantz, David E. Wentworth, Charles T. Davis, Alexandre V. Ivachtchenko, Larisa V. Gubareva
USDA Wildlife Services - Staff Publications
Clade 2.3.4.4b highly pathogenic avian influenza (HPAI) A(H5N1) viruses that are responsible for devastating outbreaks in birds and mammals pose a potential threat to public health. Here, we evaluated their susceptibility to influenza antivirals. Of 1,015 sequences of HPAI A(H5N1) viruses collected in the United States during 2022, eight viruses (∼0.8%) had a molecular marker of drug resistance to an FDA-approved antiviral: three adamantane-resistant (M2-V27A), four oseltamivir-resistant (NA-H275Y), and one baloxavir-resistant (PA-I38T). Additionally, 31 viruses contained mutations that may reduce susceptibility to inhibitors of neuraminidase (NA) (n = 20) or cap-dependent endonuclease (CEN) (n = 11). A panel of 22 …
The Methods Of Communication And Education Used To Train Forest And Fire Personnel Through The Swanton Pacific Ranch,
2023
California Polytechnic State University, San Luis Obispo
The Methods Of Communication And Education Used To Train Forest And Fire Personnel Through The Swanton Pacific Ranch, Christine Brittney Johnson
Master of Science in Environmental Sciences and Management Projects
California does not have a cohesive curriculum for educating and training forest and fire professionals. The Swanton Pacific Ranch Fuels Management Training Program is Cal Fire affiliated and provides online and in person training to assist in equipping fire and forest professionals throughout California with the necessary skills to be successful fire and forest practitioners and managers. An exit survey was offered to all workshop participants after the Swanton workshop concluded. The survey was answered by 331 Swanton workshop participants to assess the effectiveness of the training program, the educational practices used to teach participants, and what factors of a …
Fire Effects On Soil Organic Matter In The Creek Fire,
2023
California Polytechnic State University, San Luis Obispo
Fire Effects On Soil Organic Matter In The Creek Fire, Gracie E. Doolin
Master of Science in Environmental Sciences and Management Projects
Wildfires have increased in frequency and severity over the past few decades due to the increased concertation of CO2 emissions from anthropogenic influence. Soil carbon (C) sequestration has been identified as a climate change mitigation strategy; however, the influx of large-scale wildfires has accelerated landscape processes such as erosion, reducing soil aggradation, and soil C and nitrogen (N) protection. This trend is highlighted by the Creek Fire that occurred in September 2020 and burned 379,895 acres in the Sierra National Forest. This research is designed to close the knowledge gap regarding the impact of burn severity on soil organic matter …
Pumping-Induced Drawdown Of Streams In Proximity To Agricultural Wells,
2023
California Polytechnic State University, San Luis Obispo
Pumping-Induced Drawdown Of Streams In Proximity To Agricultural Wells, Sara Alina Sternberg
Master of Science in Environmental Sciences and Management Projects
In the context of unprecedented drought and aquifer overdraft in California, understanding surface water and groundwater connectivity have become increasingly important. While there is a clear understanding of how wells induce drawdown in aquifers (Theis, 1935; Hantush, 1965), secondary effects on local streams have not fully been considered. Current mathematical models targeting aquifer drawdown do not address stream drawdown response in aquifer-stream systems with strong connectivity; instead, they assume the stream to be a constant head boundary. In the drought-stricken and summer-dry climate of California, streams often run dry for months out of the year, which is currently not reflected …
