Optics Commons^™

Aspects Of Stochastic Geometric Mechanics In Molecular Biophysics, David Frost

All Dissertations

In confocal single-molecule FRET experiments, the joint distribution of FRET efficiency and donor lifetime distribution can reveal underlying molecular conformational dynamics via deviation from their theoretical Forster relationship. This shift is referred to as a dynamic shift. In this study, we investigate the influence of the free energy landscape in protein conformational dynamics on the dynamic shift by simulation of the associated continuum reaction coordinate Langevin dynamics, yielding a deeper understanding of the dynamic and structural information in the joint FRET efficiency and donor lifetime distribution. We develop novel Langevin models for the dye linker dynamics, including rotational dynamics, based …

Effective Non-Hermiticity And Topology In Markovian Quadratic Bosonic Dynamics, Vincent Paul Flynn

Dartmouth College Ph.D Dissertations

Recently, there has been an explosion of interest in re-imagining many-body quantum phenomena beyond equilibrium. One such effort has extended the symmetry-protected topological (SPT) phase classification of non-interacting fermions to driven and dissipative settings, uncovering novel topological phenomena that are not known to exist in equilibrium which may have wide-ranging applications in quantum science. Similar physics in non-interacting bosonic systems has remained elusive. Even at equilibrium, an "effective non-Hermiticity" intrinsic to bosonic Hamiltonians poses theoretical challenges. While this non-Hermiticity has been acknowledged, its implications have not been explored in-depth. Beyond this dynamical peculiarity, major roadblocks have arisen in the search …

Photonic Sensors Based On Integrated Ring Resonators, Jaime Da Silva

Mechanical Engineering Research Theses and Dissertations

This thesis investigates the application of integrated ring resonators to different sensing applications. The sensors proposed here rely on the principle of optical whispering gallery mode (WGM) resonance shifts of the resonators. Three distinct sensing applications are investigated to demonstrate the concept: a photonic seismometer, an evanescent field sensor, and a zero-drift Doppler velocimeter. These concepts can be helpful in developing lightweight, compact, and highly sensitive sensors. Successful implementation of these sensors could potentially address sensing requirements for both space and Earth-bound applications. The feasibility of this class of sensors is assessed for seismic, proximity, and vibrational measurements.

The Complex Propagation Of Light Explained Visually: How To Make A Hologram, Bruno Ray Becher

Senior Projects Spring 2021

The complexity of light’s wave nature is shown in the paths that light takes. In this project I will show several useful ways to imagine and predict how light will travel from one place to another. Once light is produced it does not immediately fill a room, instead it undulates through free space as if the space itself was a fluid. Once we understand the way light flows and interacts with its environment not only can we predict and control its shape with a hologram, but also discover clues which give secrets about where the light has been. Telescopes and …

Data Assimilation For Conductance-Based Neuronal Models, Matthew Moye

Dissertations

This dissertation illustrates the use of data assimilation algorithms to estimate unobserved variables and unknown parameters of conductance-based neuronal models. Modern data assimilation (DA) techniques are widely used in climate science and weather prediction, but have only recently begun to be applied in neuroscience. The two main classes of DA techniques are sequential methods and variational methods. Throughout this work, twin experiments, where the data is synthetically generated from output of the model, are used to validate use of these techniques for conductance-based models observing only the voltage trace. In Chapter 1, these techniques are described in detail and the …

Physical Applications Of The Geometric Minimum Action Method, George L. Poppe Jr.

Dissertations, Theses, and Capstone Projects

This thesis extends the landscape of rare events problems solved on stochastic systems by means of the \textit{geometric minimum action method} (gMAM). These include partial differential equations (PDEs) such as the real Ginzburg-Landau equation (RGLE), the linear Schroedinger equation, along with various forms of the nonlinear Schroedinger equation (NLSE) including an application towards an ultra-short pulse mode-locked laser system (MLL).

Additionally we develop analytical tools that can be used alongside numerics to validate those solutions. This includes the use of instanton methods in deriving state transitions for the linear Schroedinger equation and the cubic diffusive NLSE.

These analytical solutions are …

Electromagnetic Resonant Scattering In Layered Media With Fabrication Errors, Emily Anne Mchenry

LSU Doctoral Dissertations

In certain layered electromagnetic media, one can construct a waveguide that supports a harmonic electromagnetic field at a frequency that is embedded in the continuous spectrum. When the structure is perturbed, this embedded eigenvalue moves into the complex plane and becomes a “complex resonance” frequency. The real and imaginary parts of this complex frequency have physical meaning. They lie behind anomalous scattering behaviors known collectively as “Fano resonance”, and people are interested in tuning them to specific values in optical devices. The mathematics involves spectral theory and analytic perturbation theory and is well understood [16], at least on a theoretical …

Phase Dynamics Of Locset Control Methodology, Brendan Neschke

Masters Theses

Single-mode fiber amplifiers produce diffraction-limited beams very efficiently. Maximum beam intensity requires that an array of these amplifiers have their beams coherently combined at the target. Optical path differences and noise adversely affect beam quality. An existing closed loop phase control methodology, called the locking of optical coherence by single-detector electronic-frequency tagging (LOCSET), corrects phase errors in real time by electronically detecting path length differences and sending signals to lithium niobate phase adjusters. Broadening the line-width using “jitter” of the input signal can increase the output power of an individual amplifier by suppressing nonlinearity. The system dynamics of LOCSET are …

Midwave Infrared Imaging Fourier Transform Spectrometry Of Combustion Plumes, Kenneth C. Bradley

Theses and Dissertations

A midwave infrared (MWIR) imaging Fourier transform spectrometer (IFTS) was used to successfully capture and analyze hyperspectral imagery of combustion plumes. Jet engine exhaust data from a small turbojet engine burning diesel fuel at a flow rate of 300 cm³/min was collected at 1 cm⁻¹ resolution from a side-plume vantage point on a 200x64 pixel window at a range of 11.2 meters. Spectral features of water, CO, and CO² were present, and showed spatial variability within the plume structure. An array of thermocouple probes was positioned within the plume to aid in temperature analysis. A single-temperature …

Spontaneous Pulse Formation In Bistable Systems, George A. Andrews

Dissertations, Theses, and Masters Projects

This thesis considers localized spontaneous pulse formation in nonlinear, dissipative systems that are far from equilibrium and which exhibit bistability. It is shown that such pulses can form in systems that are dominated by the combined effects of: (1) a saturable amplifying or gain region, (2) a saturable absorbing or loss region, and (3) cavity effects. Analysis is based upon novel models for both an inertialess material in which the absorber responds instantaneously and inertial material in which there is temporal delay in the response. Additionally, we include the situation where the material does not fully relax between pulses, i.e. …

Scintillation Behind The Collecting Lens Of A Receiver, Clarissa A. Fleming Russell

Retrospective Theses and Dissertations

One of the negative effects that a laser beam experiences as it propagates through the atmosphere is intensity fluctuations or scintillation. Because scintillation-- as it pertains to laser radar and laser satellite communication systems-- is the main subject of this research, the assumption of an optical element ( such as a Gaussian lens) along the propagation path in front of the detector is valid. The mathematical addition of optical elements to the propagation path is treated using the ABCD ray matrix method. The expression for scintillation is derived, analyzed, and numerically calculated for positions to the left and right of …

A Non-Homogeneous, Spatio-Temporal, Wavelet Multiresolution Analysis And Its Application To The Analysis Of Motion, Thomas J. Burns

Theses and Dissertations

This research presents a multiresolution wavelet analysis tool for analyzing motion in time sequential imagery. A theoretical framework is developed for constructing an L2R wavelet multiresolution analysis from three non-identical spatial and temporal L2R wavelet multiresolution analyses. This framework provides the flexibility to tailor the spatio-temporal frequency characteristics of the three dimensional wavelet filter to match the frequency behavior of the analyzed signal. An unconventional, discrete multiresolution wavelet decomposition algorithm is developed which yields a rich set of independent spatio-temporally oriented frequency channels for analyzing, the size and speed characteristics of moving objects. Unlike conventional wavelet decomposition methods, this algorithm …

A Mathematical Model Of The Dynamics Of An Optically Pumped Codoped Solid State Laser System, Thomas G. Wangler

Mathematics & Statistics Theses & Dissertations

This is a study of a mathematical model for the dynamics of an optically pumped codoped solid state laser system. The model comprises five first order, nonlinear, coupled, ordinary differential equations which describe the temporal evolution of the dopant electron populations in the laser crystal as well as the photon density in the laser cavity. The analysis of the model is conducted in three parts.

First, a detailed explanation of the modeling process is given and the full set of rate equations is obtained. The model is then simplified and certain qualitative properties of the solution are obtained.

In the …