Optics Commons^™

Design And Development Of A Standalone Digital Holographic Microscope Employing Phase-Driven Reconstruction And Classification For Biomedical Imaging And Optical Diagnostics, Charlotte Kyeremah

Graduate Doctoral Dissertations

Access to advanced biomedical imaging technologies remains a significant challenge in resource-limited settings, especially for early disease detection and monitoring of diseases such as malaria, HIV, and other blood-borne diseases. Although point-of-care (POC) devices have gained popularity in global health, many rely on antibody-based tests, lateral flow strips, or optical readouts that often lack quantitative capabilities, sensitivity to early infections, or versatility in different diagnostic targets. In addition, these systems are typically dependent on disposable reagents or manual interpretation, which limits their effectiveness in remote areas. Digital Holographic Microscopy (DHM) presents a promising alternative as a label-free imaging method capable …

Advancing Real-World Implementation Of The Well Optimized Linear Finder (Wolf) High-Speed Atmospheric Turbulence Compensation Method, Timothy Evan Coon

Theses and Dissertations

This dissertation advances the real-world implementation of the Well Optimized Linear Finder (WOLF) method for high-speed Atmospheric Turbulence Compensation (ATC). Atmospheric turbulence introduces phase aberrations into optical wavefronts and degrades image quality in terrestrial imaging systems. Traditional phase diversity methods are computationally intensive and poorly suited to real-time operation. The WOLF method addresses these limitations through a novel, point-wise formulation of the optical transfer function (OTF) as a structured autocorrelation of the generalized pupil function (GPF). This formulation enables the estimation of phase aberrations at individual spatial coordinates with distributed computational complexity.

The research begins by developing a MATLAB-based simulation …

Abel Inversion Comparison Of Geant4 Simulation And Ozone Production Using Cavity Ringdown Spectroscopy In Nitrogen/Oxygen Mixtures In The Presence Of Alpha Radiation, Sidney John Gautrau

Dissertations

The effects of radioactive materials on atmospheric gases have been a topic of interest for years. Radioactive materials ionize the surrounding air, and subsequent reactions lead to molecules such as ozone and nitrogen oxides. The presence of these species above background levels can be used as a marker for radioactive materials which has desirable defense applications like remote detection of radioactive materials. The molecules created in the presence of radioactive materials have been quantified in literature using G-values, which is the number of molecules of a product produced per 100 eV of deposited energy. In this work, Cavity Ringdown Spectroscopy …

A System And Method For Measuring Spatially Varying Surface Appearances With A Study Of Feathers, Jessica Baron-Lis

All Dissertations

Real-world materials, particularly biological structures such as feathers exhibit complex appearances that vary spatially across their surfaces. The field of computer graphics provides a means of understanding such surfaces through material modeling which uses both analytical models and data acquired from light-surface interactions. There are many efforts within the past decade in measuring materials for graphics, but common limitations in these works include not accounting for spatially varying properties and reliance on neural networks and synthetic datasets.

Feathers from modern birds present diverse appearances due to how light interacts with their unique hierarchical microstructures. Variations in those structures lead to …

High Antarctic Coastal Productivity In Polynyas Revealed By Considering Remote Sensing Ice-Adjacency Effects, Hilde Oliver, Jessica S. Turner, Alexandre Castagna, Henry Houskeeper, Heidi Dierssen

OES Faculty Publications

Ocean color-based estimates of Antarctic net primary productivity (NPP) have indicated low nearshore productivity in ice-adjacent waters, contrasting with coupled physical–biogeochemical models. To understand this discrepancy, we assessed satellite records of polynya NPP by comparing field data with two satellite imagery datasets derived using different processing schemes. Our results indicate historical underestimation of chlorophyll a for imagery obtained using default atmospheric correction processing within approximately 100 km of ice-covered coastlines due to adjacency effects. Using radiative transfer modeling, we find that biases in ocean color polynya observations due to adjacency effects correspond to the high albedo of ice and snow. …

Vysion Software, Isaias Hernandez-Dominguez Jr, Chander Luderman Miller

2024 Symposium

Vision loss presents significant challenges in daily life. Existing solutions for blind and visually impaired individuals are often limited in functionality, expensive, or complex to use. Vysion Software addresses this gap by developing a user-friendly, all-in-one AI companion app that provides features including text summarization, real-time audio descriptions, and AI-enhanced navigation. This project details the development plan, initial functionalities, and future vision for Vysion Software.

Applications Of Independent And Identically Distributed (Iid) Random Processes In Polarimetry And Climatology, Dan Kestner

Dissertations, Master's Theses and Master's Reports

The unifying theme of this thesis is the characterization of “perfect randomness,” i.e., independent and identically distributed (IID) stochastic processes as these are applied in physical science. Two specific and mathematically distinct applications are chosen: (i) Radar and optical polarimetry; (ii) Analysis of time series in meteorology. In (i), IID process of a special kind, namely, with a distribution defined by symmetry, is used to link its multivariate Gaussian density to uniformity on the Poincaré sphere. This “statistical ellipsometry” approach is then used to relate polarimetric mismatches or imbalances to ellipsometric variables and suitably chosen cross-correlation measures. In (ii), recently …

Cross-Layer Design Of Highly Scalable And Energy-Efficient Ai Accelerator Systems Using Photonic Integrated Circuits, Sairam Sri Vatsavai

Theses and Dissertations--Electrical and Computer Engineering

Artificial Intelligence (AI) has experienced remarkable success in recent years, solving complex computational problems across various domains, including computer vision, natural language processing, and pattern recognition. Much of this success can be attributed to the advancements in deep learning algorithms and models, particularly Artificial Neural Networks (ANNs). In recent times, deep ANNs have achieved unprecedented levels of accuracy, surpassing human capabilities in some cases. However, these deep ANN models come at a significant computational cost, with billions to trillions of parameters. Recent trends indicate that the number of parameters per ANN model will continue to grow exponentially in the foreseeable …

Optical Response Of 3d Model Topological Nodal-Line Semimetal, Sita Kandel, Godfrey Gumbs, Oleg L. Berman

Publications and Research

Wepresent a semi-analytical expression for both longitudinal and transverse optical conductivities of a model TNLSM employing the Kubo formula with emphasis on the optical spectral weight redistribution, deduced from appropriate Green’s func tions. In this semimetal, the conduction and valence bands cross each other along a one- dimensional curve protected by certain symmetry group in the 3D Brillouin zone. Although the crossing cannot be removed by any perturbations, it can be adjusted by continuous tuning of the Hamiltonian with a parameter α. When α>0, the two bands cross each other near the Γ point in the (kx,ky) plane of …

Modeling, Simulation And Control Of Microrobots For The Microfactory., Zhong Yang

Electronic Theses and Dissertations

Future assembly technologies will involve higher levels of automation in order to satisfy increased microscale or nanoscale precision requirements. Traditionally, assembly using a top-down robotic approach has been well-studied and applied to the microelectronics and MEMS industries, but less so in nanotechnology. With the boom of nanotechnology since the 1990s, newly designed products with new materials, coatings, and nanoparticles are gradually entering everyone’s lives, while the industry has grown into a billion-dollar volume worldwide. Traditionally, nanotechnology products are assembled using bottom-up methods, such as self-assembly, rather than top-down robotic assembly. This is due to considerations of volume handling of large …

Oil Particle Analysis Using Machine Learning And Holography Imaging, Daniel Cruz

Open Access Theses & Dissertations

Holographic cameras show potential as a sensor to monitor oil spills. Holographic cameras record the light interference from particles in a volume of space, producing an image called a hologram. Processing these holograms is known as hologram reconstruction. It produces a representation of particles located in three-dimensional space. These cameras can record precise shapes and sizes of particles in a volume of water. However, it is very time-consuming and resource-intensive to process the images. Most algorithms that perform particle analysis require the hologram reconstruction step. The well-documented hybrid method is one such algorithm. Machine learning is one possible technique that …

Neutron Interferometry Using A Single Modulated Phase Grating, Ivan J. Hidrovo Giler

LSU Master's Theses

Neutron grating interferometry provides information on phase and small-angle scatter in addition to attenuation. Previously, phase grating moiré interferometers (PGMI) with two or three phase gratings have been developed. These phase-grating systems use the moiré far-field technique to avoid the need for high-aspect absorption gratings used in Talbot-Lau interferometers (TLI) which reduce the neutron flux reaching the detector. We demonstrate through simulations a novel phase grating interferometer system for cold neutrons that requires a single modulated phase grating (MPG) for phase-contrast imaging, as opposed to the two or three phase gratings in previously employed PGMI systems. We compare the MPG …

Three Wave Mixing In Epsilon-Near-Zero Plasmonic Waveguides For Signal Regeneration, Nicholas Mirchandani, Mark C. Harrison

Engineering Faculty Articles and Research

Vast improvements in communications technology are possible if the conversion of digital information from optical to electric and back can be removed. Plasmonic devices offer one solution due to optical computing’s potential for increased bandwidth, which would enable increased throughput and enhanced security. Plasmonic devices have small footprints and interface with electronics easily, but these potential improvements are offset by the large device footprints of conventional signal regeneration schemes, since surface plasmon polaritons (SPPs) are incredibly lossy. As such, there is a need for novel regeneration schemes. The continuous, uniform, and unambiguous digital information encoding method is phase-shift-keying (PSK), so …

Artificial Intelligence And Machine Learning In Optical Information Processing: Introduction To The Feature Issue, Khan Iftekharuddin, Chrysanthe Preza, Abdul Ahad S. Awwal, Michael E. Zelinski

Electrical & Computer Engineering Faculty Publications

This special feature issue covers the intersection of topical areas in artificial intelligence (AI)/machine learning (ML) and optics. The papers broadly span the current state-of-the-art advances in areas including image recognition, signal and image processing, machine inspection/vision and automotive as well as areas of traditional optical sensing, interferometry and imaging.

Assessment And Diagnosis Of Human Colorectal And Ovarian Cancer Using Optical Imaging And Computer-Aided Diagnosis, Yifeng Zeng

McKelvey School of Engineering Graduate Student Theses & Dissertations

Tissue optical scattering has recently emerged as an important diagnosis parameter associated with early tumor development and progression. To characterize the differences between benign and malignant colorectal tissues, we have created an automated optical scattering coefficient mapping algorithm using an optical coherence tomography (OCT) system. A novel feature called the angular spectrum index quantifies the scattering coefficient distribution. In addition to scattering, subsurface morphological changes are also associated with the development of colorectal cancer. We have observed a specific mucosa structure indicating normal human colorectal tissue, and have developed a real-time pattern recognition neural network to localize this specific structure …

Light Field Compression And Manipulation Via Residual Convolutional Neural Network, Eisa Hedayati

Dissertations, Master's Theses and Master's Reports

Light field (LF) imaging has gained significant attention due to its recent success in microscopy, 3-dimensional (3D) displaying and rendering, augmented and virtual reality usage. Postprocessing of LF enables us to extract more information from a scene compared to traditional cameras. However, the use of LF is still a research novelty because of the current limitations in capturing high-resolution LF in all of its four dimensions. While researchers are actively improving methods of capturing high-resolution LF's, using simulation, it is possible to explore a high-quality captured LF's properties. The immediate concerns following the LF capture are its storage and processing …

Snow-Albedo Feedback In Northern Alaska: How Vegetation Influences Snowmelt, Lucas C. Reckhaus

Theses and Dissertations

This paper investigates how the snow-albedo feedback mechanism of the arctic is changing in response to rising climate temperatures. Specifically, the interplay of vegetation and snowmelt, and how these two variables can be correlated. This has the potential to refine climate modelling of the spring transition season. Research was conducted at the ecoregion scale in northern Alaska from 2000 to 2020. Each ecoregion is defined by distinct topographic and ecological conditions, allowing for meaningful contrast between the patterns of spring albedo transition across surface conditions and vegetation types. The five most northerly ecoregions of Alaska are chosen as they encompass …

Global Gradient-Based Phase Unwrapping Algorithm For Increased Performance In Wavefront Sensing, Bryan R. Bartelt

Theses and Dissertations

As the reliance on satellite data for military and commercial use increases, more effort must be exerted to protect our space-based assets. In order to help increase our space domain awareness (SDA), new approaches to ground-based space surveillance via wavefront sensing must be adopted. Improving phase-unwrapping algorithms in order to assist in phase retrieval methods is one way of increasing the performance in current adaptive optics (AO) systems. This thesis proposes a new phase-unwrapping algorithm that uses a global, gradient-based technique to more rapidly identify and correct for areas of phase wrapping during particular phase retrieval methods. This is beneficial …

Nis2 As A Broadband Saturable Absorber For Ultrafast Pulse Lasers, Pengfei Wang, Han Zhang, Yu Yin, Qiuyun Ouyang, Yujin Chen, Elfed Lewis, Gerald Farrell, Masaki Tokurakawa, Sulaiman Wadi Harun, Cong Wang, Shi Li

Articles

Nickel disulfide (NiS2) has recently been found to possess strong nonlinear saturable absorption properties. This feature is highly attractive for nonlinear photonics applications. Ultrafast pulse generation is successfully demonstrated in this article for both Ytterbium- and Erbium-doped fibre lasers using micro-fibre deposited nickel disulfide (NiS2) as a saturable absorber (SA). The fabricated SA device has a modulation depth of 23% at 1.06 μm and 30.8% at 1.55 μm. Stable dissipative soliton operation was achieved at 1064.5 nm with a pulse duration of 11.7 ps and another stable conventional soliton pulse train was also obtained at 1560.2 nm with a pulse …

Special Section Guest Editorial: Machine Learning In Optics, Jonathan Howe, Travis Axtell, Khan Iftekharuddin

Electrical & Computer Engineering Faculty Publications

This guest editorial summarizes the Special Section on Machine Learning in Optics.

Demonstration Of Visible And Near Infrared Raman Spectrometers And Improved Matched Filter Model For Analysis Of Combined Raman Signals, Alexander Matthew Atkinson

Electrical & Computer Engineering Theses & Dissertations

Raman spectroscopy is a powerful analysis technique that has found applications in fields such as analytical chemistry, planetary sciences, and medical diagnostics. Recent studies have shown that analysis of Raman spectral profiles can be greatly assisted by use of computational models with achievements including high accuracy pure sample classification with imbalanced data sets and detection of ideal sample deviations for pharmaceutical quality control. The adoption of automated methods is a necessary step in streamlining the analysis process as Raman hardware becomes more advanced. Due to limits in the architectures of current machine learning based Raman classification models, transfer from pure …

Near Earth Space Object Detection Using Parallax As Multi-Hypothesis Test Criterion, Joseph C. Tompkins, Stephen C. Cain, David J. Becker

Faculty Publications

The US Strategic Command (USSTRATCOM) operated Space Surveillance Network (SSN) is tasked with Space Situational Awareness (SSA) for the U.S. military. This system is made up of Electro-Optic sensors, such as the Ground-based Electro-Optical Deep Space Surveillance (GEODSS) and RADAR based sensors, such as the Space Fence Gaps. They remain in the tracking of Resident Space Objects (RSO’s) in Geosynchronous Orbits (GEO), due to limitations of SST and GEODSS system implementation. This research explores a reliable, ground-based technique used to quickly determine an RSO’s altitude from a single or limited set of observations. Implementation of such sensors into the SSN …

Genetic Algorithm Design Of Photonic Crystals For Energy-Efficient Ultrafast Laser Transmitters, Troy A. Hutchins-Delgado

Shared Knowledge Conference

Photonic crystals allow light to be controlled and manipulated such that novel photonic devices can be created. We are interested in using photonic crystals to increase the energy efficiency of our semiconductor whistle-geometry ring lasers. A photonic crystal will enable us to reduce the ring size, while maintaining confinement, thereby reducing its operating power. Photonic crystals can also exhibit slow light that will increase the interaction with the material. This will increase the gain, and therefore, lower the threshold for lasing to occur. Designing a photonic crystal for a particular application can be a challenge due to its number of …

Techniques For Improved Space Object Detection Performance From Ground-Based Telescope Systems Using Long And Short Exposure Images, David J. Becker

Theses and Dissertations

Space object detection is of great importance in the highly dependent yet competitive and congested space domain. Detection algorithms employed play a crucial role in fulfilling the detection component in the space situational awareness mission to detect, track, characterize and catalog unknown space objects. Many current space detection algorithms use a matched filter or a spatial correlator on long exposure data to make a detection decision at a single pixel point of a spatial image based on the assumption that the data follows a Gaussian distribution. This research focuses on improving current space object detection algorithms and developing new algorithms …

Automating Mobile Device File Format Analysis, Richard A. Dill

Theses and Dissertations

Forensic tools assist examiners in extracting evidence from application files from mobile devices. If the file format for the file of interest is known, this process is straightforward, otherwise it requires the examiner to manually reverse engineer the data structures resident in the file. This research presents the Automated Data Structure Slayer (ADSS), which automates the process to reverse engineer unknown file for- mats of Android applications. After statically parsing and preparing an application, ADSS dynamically runs it, injecting hooks at selected methods to uncover the data structures used to store and process data before writing to media. The resultant …

Efficient Phase Retrieval For Off-Axis Point Spread Functions, Salome Esteban Carrasco

Theses and Dissertations

A novel pairing of phase retrieval tools allows for efficient estimation of pupil phase in optical systems from images of point spread functions (PSFs). The phase retrieval algorithm uses correlation of modeled phase in the focal plane to decouple aberrations that are difficult to identify in complex PSFs. The use of a phase kernel that departs from the Fresnel approximation for off-axis PSFs is a more accurate representation of wavefront phase in finite conjugate imaging. The combination of the approximation and phase correlation algorithm can be more efficient and accurate than generic algorithms.

Physical Applications Of The Geometric Minimum Action Method, George L. Poppe Jr.

Dissertations, Theses, and Capstone Projects

This thesis extends the landscape of rare events problems solved on stochastic systems by means of the \textit{geometric minimum action method} (gMAM). These include partial differential equations (PDEs) such as the real Ginzburg-Landau equation (RGLE), the linear Schroedinger equation, along with various forms of the nonlinear Schroedinger equation (NLSE) including an application towards an ultra-short pulse mode-locked laser system (MLL).

Additionally we develop analytical tools that can be used alongside numerics to validate those solutions. This includes the use of instanton methods in deriving state transitions for the linear Schroedinger equation and the cubic diffusive NLSE.

These analytical solutions are …

Identification Of Streptococcus Pyogenes Using Raman Spectroscopy, Ehsan Majidi

Wayne State University Dissertations

Despite the attention that Raman Spectroscopy has gained recently in the area of pathogen identification, the spectra analyses techniques are not well developed. In most scenarios, they rely on expert intervention to detect and assign the peaks of the spectra to specific molecular vibration. Although some investigators have used machine-learning techniques to classify pathogens, these studies are usually limited to a specific application, and the generalization of these techniques is not clear. Also, a wide range of algorithms have been developed for classification problems, however, there is less insight to applying such methods on Raman spectra. Furthermore, analyzing the Raman …

Electrodynamical Modeling For Light Transport Simulation, Michael G. Saunders

Undergraduate Honors Theses

Modernity in the computer graphics community is characterized by a burgeoning interest in physically based rendering techniques. That is to say that mathematical reasoning from first principles is widely preferred to ad hoc, approximate reasoning in blind pursuit of photorealism. Thereby, the purpose of our research is to investigate the efficacy of explicit electrodynamical modeling by means of the generalized Jones vector given by Azzam [1] and the generalized Jones matrix given by Ortega-Quijano & Arce-Diego [2] in the context of stochastic light transport simulation for computer graphics. To augment the status quo path tracing framework with such a modeling …

Mapping Open Water Bodeis With Optical Remote Sensing, Mary Ellen O'Donnell, Erika Podest

STAR Program Research Presentations

There is interest in mapping open water bodies using remote sensing data. Coverage and persistence of open water is currently a poorly measured variable due to its spatial and temporal variability across landscapes, especially in remote areas. The presence and persistence of open water is one of the primary indicators of conditions suitable for mosquito breeding habitats. Predicting the risk of mosquito caused disease outbreaks is a required step towards their control and eradication. Satellite observations can provide needed data to support agency decisions for deployment of preventative measures and control resources. This study, which will try to map open …