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2025

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Articles 61 - 90 of 142

Full-Text Articles in Oceanography

A Century Of Sediment Metal Contamination Of Mar Menor, Europe's Largest Saltwater Lagoon, Irene Alorda-Montiel, Valentí Rodellas, Ariane Arias-Ortiz, Albert Palanques, Andrea G. Bravo, Júlia Rodriguez-Puig, Aaron Alorda-Kleinglass, Carlos Green-Ruiz, Marc Diego-Feliu, Pere Masqué, Javier Gilabert, Jordi Garcia-Orellana Jan 2025

A Century Of Sediment Metal Contamination Of Mar Menor, Europe's Largest Saltwater Lagoon, Irene Alorda-Montiel, Valentí Rodellas, Ariane Arias-Ortiz, Albert Palanques, Andrea G. Bravo, Júlia Rodriguez-Puig, Aaron Alorda-Kleinglass, Carlos Green-Ruiz, Marc Diego-Feliu, Pere Masqué, Javier Gilabert, Jordi Garcia-Orellana

OES Faculty Publications

Coastal enclosed ecosystems, such as lagoons, are vulnerable to anthropogenic impacts because they favor the accumulation of contaminants from the surrounding watersheds, particularly in their sediments. Europe's largest saltwater lagoon, the Mar Menor (SE, Iberian Peninsula), is a highly impacted ecosystem and the first in the continent to be granted personhood rights. Based on a high-resolution spatial and temporal dataset, we present the historical reconstruction of metal contamination in this ecosystem during the last century. Our results highlight that sediment metal contamination has been mainly driven by the development of the mining industry in the nearby Sierra Minera de Cartagena-La …


Radon And Radium Isotope Signatures On A Massive Ice- And Permafrost-Rich Coastline, Lauren Kipp, Gwénaëlle Chaillou, Markus Kienast, Joseph Tamborski, Dustin Whalen Jan 2025

Radon And Radium Isotope Signatures On A Massive Ice- And Permafrost-Rich Coastline, Lauren Kipp, Gwénaëlle Chaillou, Markus Kienast, Joseph Tamborski, Dustin Whalen

OES Faculty Publications

Rapid warming in the Arctic is degrading permafrost and massive ice deposits, which releases solutes previously trapped in ice and frozen soils into groundwater, rivers, and the coastal ocean. Radium and radon isotopes are enriched in groundwaters and may therefore have utility as tracers for the delivery of permafrost-derived solutes to the ocean, particularly if massive ice- or permafrost-derived meltwaters have a distinct isotopic ratio. The ratio of radium isotopes within massive ice deposits can also be used to constrain timescales of ice segregation, as the four isotopes will decay with known rates once removed from contact with sediments. Here …


The Effect Of Temperature And Salinity On Margalefidinium Polykrikoides Group Iii Va, Usa Strain Growth, Eduardo Pérez-Vega, Margaret R. Mulholland, Katherine E. Crider, Kimberly E. Powell, P. Dreux Chappell, Alexander Bochdansky Jan 2025

The Effect Of Temperature And Salinity On Margalefidinium Polykrikoides Group Iii Va, Usa Strain Growth, Eduardo Pérez-Vega, Margaret R. Mulholland, Katherine E. Crider, Kimberly E. Powell, P. Dreux Chappell, Alexander Bochdansky

OES Faculty Publications

Margalefidinium polykrikoides is a cosmopolitan dinoflagellate that blooms in coastal waters. Despite genomic evidence that it belongs to Group III and so closely related to isolates from Puerto Rico, Malaysia, North America, and Central America, M. polykrikoides blooms in the Chesapeake Bay at warmer temperatures and lower salinities than in coastal ecosystems occupied by its closest relatives. In this study, the effect of temperature and salinity on the growth rate and total cell yield of an M. polykrikoides VA culture isolate were examined and compared with environmental observations made during M. polykrikoides blooms in the Chesapeake Bay. M. polykrikoides group …


Millennial Pulses Of African Dust And Itcz Shifts In The Eastern Equatorial Pacific, Danielle E. Schimmenti, Franco Marcantonio, M. Roxana Sierra Hernández, Matthew W. Schmidt Jan 2025

Millennial Pulses Of African Dust And Itcz Shifts In The Eastern Equatorial Pacific, Danielle E. Schimmenti, Franco Marcantonio, M. Roxana Sierra Hernández, Matthew W. Schmidt

OES Faculty Publications

We present high-resolution records of detrital Pb and Nd isotopes from marine core site MV1014-02-17JC (00° 10.8297’S, 85° 52.0042’W) in the Eastern Equatorial Pacific (EEP) and use a Bayesian isotope mixing model, MixSIAR, to quantify global dust source contributions since the onset of the last glaciation 30,000 yr ago. We find that in addition to South American dust from the Andean margin, North African dust from the Saharan desert makes up significant proportions of the EEP dust delivered to the site of study. The proportion of North African dust was significantly enhanced during the cold Northern Hemisphere stadials, Heinrich Stadial …


Ensemble Machine Learning Approaches For Bathymetry Estimation In Multi-Spectral Images, Kazi A. Islam, Omar Abdul-Hassan, Hongfang Zhang, Victoria Hill, Blake Schaeffer, Richard Zimmerman, Jiang Li Jan 2025

Ensemble Machine Learning Approaches For Bathymetry Estimation In Multi-Spectral Images, Kazi A. Islam, Omar Abdul-Hassan, Hongfang Zhang, Victoria Hill, Blake Schaeffer, Richard Zimmerman, Jiang Li

OES Faculty Publications

Traditional bathymetry measures require a large number of human hours, and many bathymetry records are obsolete or missing. Automated measures of bathymetry would reduce costs and increase accessibility for research and applications. In this paper, we optimized a recent machine learning model, named CatBoostOpt, to estimate bathymetry based on high-resolution WorldView-2 (WV-2) multi-spectral optical satellite images. CatBoostOpt was demonstrated across the Florida Big Bend coastline, where the model learned correlations between in situ sound Navigation and Ranging (Sonar) bathymetry measurements and the corresponding multi-spectral reflectance values in WV-2 images to map bathymetry. We evaluated three different feature transformations as inputs …


Successful Eastern Oyster (Crassostrea Virginica) Recruitment On Intertidal Artificial Substrates In Virginia, Usa, Rochelle D. Seitz, Kathleen E. Knick, Emily Suchonic, Amanda Pysher Jan 2025

Successful Eastern Oyster (Crassostrea Virginica) Recruitment On Intertidal Artificial Substrates In Virginia, Usa, Rochelle D. Seitz, Kathleen E. Knick, Emily Suchonic, Amanda Pysher

OES Faculty Publications

Declines of eastern oyster (Crassostrea virginica) populations and scarcity of natural oyster shell necessitate quantifying the effectiveness of artificial oyster reef substrates over varying environmental conditions. Oyster castles are often used in intertidal areas with moderate wave energy; however, new concrete, natural-looking substrates, GROW Reef Tiles, are now available. Eastern oyster recruitment and size on oyster castles (OC) and GROW Reef Tiles (GT), with 27% higher surface area on OC, were assessed three times over 25 months in locations with varying salinity. Four sites in the Chesapeake Bay region were examined: Cherrystone Inlet, Mockhorn Bay, Elizabeth River, and …


Core-Top Constraints On The Ecology And Paleothermometry Of Planktic Foraminifera In The Indian Ocean, Ryan H. Glaubke, Elisabeth L. Sikes, Natalie E. Umling, Katherine A. Allen, Matthew W. Schmidt Jan 2025

Core-Top Constraints On The Ecology And Paleothermometry Of Planktic Foraminifera In The Indian Ocean, Ryan H. Glaubke, Elisabeth L. Sikes, Natalie E. Umling, Katherine A. Allen, Matthew W. Schmidt

OES Faculty Publications

The magnesium-to‑calcium ratio (Mg/Ca) of fossil foraminifera is a widely used geochemical proxy for reconstructing past ocean temperatures. Culturing experiments have shown that, for some species, nonthermal influences like salinity and carbonate chemistry play a non-trivial role in the incorporation of Mg into foraminiferal calcite. Inclusion of these variables into Mg/Ca calibrations have provided a better fit to core top and sediment trap data in some recent studies, but the widespread covariation of potential control variables in the open ocean and the lack of multivariate calibrations for some species warrants additional work. Here, we assess Mg/Ca calibrations for four common …


High Antarctic Coastal Productivity In Polynyas Revealed By Considering Remote Sensing Ice-Adjacency Effects, Hilde Oliver, Jessica S. Turner, Alexandre Castagna, Henry Houskeeper, Heidi Dierssen Jan 2025

High Antarctic Coastal Productivity In Polynyas Revealed By Considering Remote Sensing Ice-Adjacency Effects, Hilde Oliver, Jessica S. Turner, Alexandre Castagna, Henry Houskeeper, Heidi Dierssen

OES Faculty Publications

Ocean color-based estimates of Antarctic net primary productivity (NPP) have indicated low nearshore productivity in ice-adjacent waters, contrasting with coupled physical–biogeochemical models. To understand this discrepancy, we assessed satellite records of polynya NPP by comparing field data with two satellite imagery datasets derived using different processing schemes. Our results indicate historical underestimation of chlorophyll a for imagery obtained using default atmospheric correction processing within approximately 100 km of ice-covered coastlines due to adjacency effects. Using radiative transfer modeling, we find that biases in ocean color polynya observations due to adjacency effects correspond to the high albedo of ice and snow. …


Unveiling Hidden Mercury And Methylmercury Sources: The Role Of Submarine Groundwater Discharge In Coastal Lagoons, Céline Lavergne, Júlia Rodriguez-Puig, Clara Ruiz-González, Maria Montero-Curiel, Gemma Casas, Daniel Romano-Gude, Irene Alorda-Montiel, Júlia Dordal-Soriano, Aaron Alorda-Kleinglass, Marc Diego-Feliu, Javier Gilabert, Alex Campillo-De La Maza, Cristina Romera-Castillo, Natalia Torres-Rodriguez, Lars-Eric Heimbürger-Boavida, Jordi Garcia-Orellana, Valenti Rodellas, Andrea G. Bravo Jan 2025

Unveiling Hidden Mercury And Methylmercury Sources: The Role Of Submarine Groundwater Discharge In Coastal Lagoons, Céline Lavergne, Júlia Rodriguez-Puig, Clara Ruiz-González, Maria Montero-Curiel, Gemma Casas, Daniel Romano-Gude, Irene Alorda-Montiel, Júlia Dordal-Soriano, Aaron Alorda-Kleinglass, Marc Diego-Feliu, Javier Gilabert, Alex Campillo-De La Maza, Cristina Romera-Castillo, Natalia Torres-Rodriguez, Lars-Eric Heimbürger-Boavida, Jordi Garcia-Orellana, Valenti Rodellas, Andrea G. Bravo

OES Faculty Publications

Mercury loads from Submarine Groundwater Discharge (SGD) may represent an overlooked source of methylmercury (MeHg) to the ocean, affecting human and ecosystem health. The SGD process involves the flow of fresh, saline, or mixed groundwater from coastal aquifers into the oceans classified in different components. Existing studies rarely report the fluxes supplied by the different SGD components; therefore, the relevance of SGD as a source of mercury remains unclear. We aimed to quantify SGD-driven mercury/methylmercury fluxes to the coast, focusing on the largest coastal lagoon in the western Mediterranean. We measured total dissolved mercury and MeHg in surficial and porewaters …


Dynamics Of Water Mass Exchange Across The Central Ross Sea Slope, Yuanjie Chen, Zhaoru Zhang, Pasquale Castagno, Xianxian Han, Michael S. Dinniman, Zhiqiang Liu, Chuning Wang Jan 2025

Dynamics Of Water Mass Exchange Across The Central Ross Sea Slope, Yuanjie Chen, Zhaoru Zhang, Pasquale Castagno, Xianxian Han, Michael S. Dinniman, Zhiqiang Liu, Chuning Wang

OES Faculty Publications

The central Ross Sea slope (CRSS) is a critical region for water mass exchange, significantly influencing the physical and biological processes of the Ross Sea shelf and the global overturning circulation. This study utilizes a high-resolution ocean-ice shelf-sea ice coupled model to investigate the mechanisms driving this exchange, involving the onshore transport of circumpolar deep water (CDW) and the offshore transport of dense shelf water (DSW). Combining numerical simulations and mooring observations, this work reveals high-frequency oscillations with a periodicity of ∼32 hr in CDW transport induced by Topographic Rossby Waves and DSW transport induced by cyclonic eddies. These findings …


Impact Of Submarine Groundwater Discharge On Microbial Communities In A Highly Anthropized Coastal Lagoon (Mar Menor, Se Spain), Daniel Romano-Gude, Júlia Dordal-Soriano, Júlia Rodriguez-Puig, Andrea G. Bravo, Irene Alorda-Montiel, Aaron Alorda-Kleinglass, Marc Diego-Feliu, Cristina Romera-Castillo, Rebeca Mallenco-Fornies, Javier Gilabert, Jordi Garcia-Orellana, Valentí Rodellas, Clara Ruiz-González Jan 2025

Impact Of Submarine Groundwater Discharge On Microbial Communities In A Highly Anthropized Coastal Lagoon (Mar Menor, Se Spain), Daniel Romano-Gude, Júlia Dordal-Soriano, Júlia Rodriguez-Puig, Andrea G. Bravo, Irene Alorda-Montiel, Aaron Alorda-Kleinglass, Marc Diego-Feliu, Cristina Romera-Castillo, Rebeca Mallenco-Fornies, Javier Gilabert, Jordi Garcia-Orellana, Valentí Rodellas, Clara Ruiz-González

OES Faculty Publications

Submarine groundwater discharge (SGD) supplies large quantities of nutrients and other terrestrial elements to coastal ecosystems, impacting marine biota and ecosystem functioning. Despite the relevance of prokaryotes for marine biogeochemistry, little is known about their responses to groundwater inputs. Here we explored the impact of SGD on the spatiotemporal patterns of prokaryotic communities from the Mar Menor (Murcia, Spain), a highly anthropized hypersaline coastal lagoon that receives large amounts of nutrient-polluted SGD. Using 16S rRNA amplicon sequencing, activity assays, and flow cytometry, we investigated the dynamics of prokaryotic communities across the lagoon and its connected environments (freshwater streams, groundwater, soils, …


Common Era Time-Transgressive Forcing Of Caribbean Water Balance, Peter J. Van Hengstum, Shawna N. Little, Richard M. Sullivan, Jeffrey P. Donnelly, Tyler S. Winkler, Anne E. Tamalavage, Patricia A. Beddows, Patricia L. Fall, Jiabi Du, Kaustubh Thirumalai, Nancy A. Albury, Sloan Coats Jan 2025

Common Era Time-Transgressive Forcing Of Caribbean Water Balance, Peter J. Van Hengstum, Shawna N. Little, Richard M. Sullivan, Jeffrey P. Donnelly, Tyler S. Winkler, Anne E. Tamalavage, Patricia A. Beddows, Patricia L. Fall, Jiabi Du, Kaustubh Thirumalai, Nancy A. Albury, Sloan Coats

OES Faculty Publications

Tropical North Atlantic sea surface temperatures and low-latitude rainfall covary, but prehistoric subtropical rainfall records are often misaligned. Here, a submarine groundwater discharge record from the northern Bahamas archives regional water balance in the northeastern Atlantic Warm Pool. We compare the reconstruction to the tropical North Atlantic seasonal temperature gradient, which can help inform how northeastern Caribbean rainy seasons are influenced by the Atlantic Warm Pool. A positive water balance in the northern Bahamas aligned with a ~0.9 °C seasonal temperature gradient from 0 to 950 CE, with both covarying on multi-decadal timescales. Aridity began at ~950 CE when a …


Organic Carbon Decay Mediated By A Mesopelagic Microbial Community: The Relevance Of Carbon Pools And Broad Biochemical Composition, Noah J. Craft, Alexander B. Bochdansky Jan 2025

Organic Carbon Decay Mediated By A Mesopelagic Microbial Community: The Relevance Of Carbon Pools And Broad Biochemical Composition, Noah J. Craft, Alexander B. Bochdansky

OES Faculty Publications

The mesopelagic zone is a site of strong microbially driven particle attenuation with depth and thus plays a crucial role in controlling the transfer efficiency of the ocean's biological pump. However, little quantitative information exists on the dependency of decay processes on the source material. Here we followed the decay of ¹⁴C-labeled dead particulate organic carbon (POC) and dissolved organic carbon (DOC) from three different phytoplankton species, and two incubations of live diatoms, in mesopelagic water over 3 months. Commonly used first-order kinetics failed to adequately describe the decay of organic material as rate constants varied from day to day. …


The Relative Contribution Of Deep And Shallow Benthic Sources To Iron Supply In The Ross Sea, With Specific Emphasis On The Ross Bank, Blair J.W. Greenan, Michael S. Dinniman, Dennis J. Mcgillicuddy Jr., Peter N. Sedwick, Stefanie L. Mack, Walker O. Smith Jr. Jan 2025

The Relative Contribution Of Deep And Shallow Benthic Sources To Iron Supply In The Ross Sea, With Specific Emphasis On The Ross Bank, Blair J.W. Greenan, Michael S. Dinniman, Dennis J. Mcgillicuddy Jr., Peter N. Sedwick, Stefanie L. Mack, Walker O. Smith Jr.

OES Faculty Publications

Summer primary productivity in the Ross Sea is limited by the availability of dissolved iron (DFe) in the euphotic zone. Previous studies have suggested that benthic sources dominate the supply of DFe to the upper water column in the southern Ross Sea polynya. The purpose of this study is to investigate whether these benthic sources are derived from shallow banks or deeper areas of the continental shelf. Our study combines analysis of in situ observations near Ross Bank with a physical ocean model simulation in an overlapping summertime period to investigate the vertical supply of DFe. Two passive tracer dyes …


Sandy Subterranean Estuaries Minimize Groundwater Nitrogen Pollution Impacts On Coastal Waters, Xiaogang Chen, Isaac R. Santos, Jinzhou Du, Bochao Xu, Joseph J. Tamborski, Ding He, Neven Cukrov, Christian J. Sanders, Jianan Liu, Peiyuan Zhu, Yan Zhang, Ling Li Jan 2025

Sandy Subterranean Estuaries Minimize Groundwater Nitrogen Pollution Impacts On Coastal Waters, Xiaogang Chen, Isaac R. Santos, Jinzhou Du, Bochao Xu, Joseph J. Tamborski, Ding He, Neven Cukrov, Christian J. Sanders, Jianan Liu, Peiyuan Zhu, Yan Zhang, Ling Li

OES Faculty Publications

Widespread anthropogenic activities pollute groundwater that eventually seeps out to the coastal ocean. Here, we resolve nutrient transformations and fluxes in 11 sandy subterranean estuaries (STEs) with contrasting nutrient sources and development trajectories. Coastal groundwater nitrogen pollution stems from sewage discharge and land use change. Anthropogenically derived groundwater nutrient fluxes with high N/P ratios (∼170) accounted for 22%–61% of riverine inputs into China's coastal waters, providing an additional source of nutrients that can fuel coastal eutrophication and algal blooms. Sandy STEs remarkably attenuated ∼84% of nitrogen pollution, minimizing the impact of submarine groundwater discharge (SGD) on coastal water quality. Hence, …


The Δ¹³C Signature Of Dissolved Organic And Inorganic Carbon Reveals Complex Carbon Transformations Within A Salt Marsh, Meagan J. Eagle, Kevin D. Kroeger, John W. Pohlman, Joseph J. Tamborski, Zhaohui Aleck Wang, T. W. Brooks, Jennifer O. Keefe Suttles, Adrian Mann Jan 2025

The Δ¹³C Signature Of Dissolved Organic And Inorganic Carbon Reveals Complex Carbon Transformations Within A Salt Marsh, Meagan J. Eagle, Kevin D. Kroeger, John W. Pohlman, Joseph J. Tamborski, Zhaohui Aleck Wang, T. W. Brooks, Jennifer O. Keefe Suttles, Adrian Mann

OES Faculty Publications

Coastal wetlands have high rates of atmospheric CO₂ uptake, which is subsequently respired back to the atmosphere, stored as organic matter within flooded, anoxic soils, or exported to the coastal ocean. Transformation of fixed carbon occurs through a variety of subsurface aerobic and anaerobic microbial processes, and results in a large inventory of dissolved carbon. Carbon source and the roles of aerobic respiration, sulfate reduction, and methane cycling were evaluated within salt marsh peat and the underlying sandy subterranean estuary. There is a large increase in dissolved inorganic carbon (DIC, 7,350 ± 3,900 μmol L-¹), dissolved organic carbon …


Dust Deposition To The Sargasso Sea: A Comparison Of Estimates Using Aluminum In The Surface Ocean Versus Aerosols And Rainwater, T. E. Williams, P. N. Sedwick, B. M. Sohst, K. N. Buck, S. Caprara, R. J. Johnson, D. C. Ohnemus, J. A. Resing, L. E. Sofen, A. Tagliabue, B. S. Twining Jan 2025

Dust Deposition To The Sargasso Sea: A Comparison Of Estimates Using Aluminum In The Surface Ocean Versus Aerosols And Rainwater, T. E. Williams, P. N. Sedwick, B. M. Sohst, K. N. Buck, S. Caprara, R. J. Johnson, D. C. Ohnemus, J. A. Resing, L. E. Sofen, A. Tagliabue, B. S. Twining

OES Faculty Publications

As a major component of mineral aerosol that partially dissolves in seawater, aluminum (Al) has been used to estimate time-averaged dust fluxes to the ocean, based on dissolved aluminum (DAl) concentrations and an assumed replacement time of DAl (tau DAl) in the surface mixed layer, along with the fractional solubility (Als) and mass abundance of Al in dust. We apply this method in the Bermuda region using seasonal water-column DAl concentrations, and compare our results with fluxes estimated from Al measured in Bermuda aerosols and rain. Inventories of DAl over the maximum mixed-layer depth of 200 m and empirically derived …


The Arctic Ocean Region : Biodiversity, Governance And Protective Measures, Antonios Andreadakis, Graeme Chesters, Dimitrios Dalaklis, 90 North Foundation Jan 2025

The Arctic Ocean Region : Biodiversity, Governance And Protective Measures, Antonios Andreadakis, Graeme Chesters, Dimitrios Dalaklis, 90 North Foundation

Reports

EXECUTIVE SUMMARY

• The Arctic Ocean region stands at the forefront of global environmental transformation, serving as a harbinger of climate change and a frontier for emergent geopolitical and economic interests.

• The Arctic region's economic potential, particularly in shipping and resource extraction, appears to offer shorter trade routes, reduced fuel consumption, and increased access to high-value resources. However, this analysis largely ignores the complex geo-physical, environmental and geographical limitations of the region.

• The fragility of Arctic Ocean ecosystems – characterized by slow ecological recovery, specialised biodiversity, and extreme environmental conditions – renders them especially vulnerable to anthropogenic disturbances. …


Topographic Forcing Of Submesoscale Instability In The Antarctic Circumpolar Current, Laur Ferris, Donglai Gong, John Klinck Jan 2025

Topographic Forcing Of Submesoscale Instability In The Antarctic Circumpolar Current, Laur Ferris, Donglai Gong, John Klinck

CCPO Publications

Subpolar frontal zones are characterized by energetic storms, intense seasonal cycles, and close connectivity with surrounding continental shelf topography. At the same time, predicting the ocean state depends on appropriate partition of resolved and parameterized dynamics, the latter of which requires understanding the dynamical processes generating diffusivity throughout the water column. While submesoscale frontal instabilities are shown to produce turbulent kinetic energy (TKE) and mixing in the surface boundary layer (SBL) of the global ocean, their development in complex dynamical regimes (e.g., elevated preexisting turbulence, large ageostrophic shear, or in proximity to topographic boundaries) is less understood. This study investigates …


Evaluating The Long-Term Effectiveness Of Marsh Terracing For Conservation With Integrated Geospatial And Wetland Simulation Modeling, Nick Carpenter, Laura Costadone, Thomas R. Allen Jan 2025

Evaluating The Long-Term Effectiveness Of Marsh Terracing For Conservation With Integrated Geospatial And Wetland Simulation Modeling, Nick Carpenter, Laura Costadone, Thomas R. Allen

ODU Articles

Coastal marshes provide essential ecosystem services, yet they are vulnerable to anthropogenic stressors and climate change, particularly sea level rise (SLR). Restoration approaches like marsh terracing have emerged as nature-based strategies to enhance resilience and reduce habitat loss. This study applies the Sea Level Affecting Marshes Model (SLAMM) to assess the potential of marsh terraces to mitigate future losses, while also examining the model’s limitations, including its assumptions and capacity to reflect complex marsh processes. A geospatial approach was used to generate 3D representations of terraces through morphostatic modeling within digital elevation models (DEMs). Under a no-restoration scenario, SLAMM projections …


Metabarcoding-Biomass Relationships And Internal Standards For Quantitative Dna Metabarcoding, Frances Webber Jan 2025

Metabarcoding-Biomass Relationships And Internal Standards For Quantitative Dna Metabarcoding, Frances Webber

Open Access Master's Theses

DNA metabarcoding has been widely adopted due to its power in investigating the composition of protistan communities, accurately identifying even small and cryptic taxa. However, the compositional nature of DNA metabarcoding results, and the distortion of natural abundances due to variation of the often-used 18S rRNA gene copy number over several orders of magnitude, renders these results semi-quantitative at best, limiting the application of DNA metabarcoding to ecological study. Here, we constructed mock communities from uni-algal cultures of taxonomically diverse phytoplankton and conducted metabarcoding using multiple primer sets and both DNA and cDNA as PCR templates. For each culture, chlorophyll …


Analyzing Seasonal Wind Trends And Climate Change Impacts Along The East Coast Of The United States (1990-2022), Avery L. Wilson Jan 2025

Analyzing Seasonal Wind Trends And Climate Change Impacts Along The East Coast Of The United States (1990-2022), Avery L. Wilson

Honors Theses and Capstones

This study investigates long-term trends in ocean wind intensity and variability along the U.S. East Coast between 1990 and 2022 using ECMWF ERA5 reanalysis data. Focusing on monthly maximum, mean, and standard deviation (STD) of wind speed at 10 meters above the surface, linear regressions were performed to analyze long-term trends. Results indicate a significant increase in wind intensity and variability in the northeastern region, particularly during winter months, which may forecast more frequent and intense cyclonic activity such as Nor’easters. Conversely, a weak decreasing trend was observed in the south. These shifts have implications for ocean-atmosphere dynamics, including vertical …


A Socio-Ecological Investigation Of Ulithian Spearfishing, Joshua Pi Jan 2025

A Socio-Ecological Investigation Of Ulithian Spearfishing, Joshua Pi

Open Access Dissertations

Coral reef socio-ecological systems (SESs) characterize the interconnected relationships between coral reef ecosystems and reef-dependent communities. One such SES exists in Ulithi Atoll, Federated States of Micronesia, where Ulithians fish, steward, and govern their reefs through customary marine tenure, traditional ecological knowledge, and cultural taboos. In recent decades, rapid modernization in Ulithi has introduced new fishing technologies, transformed fishing practices, and ultimately reshaped the functioning of Ulithi’s traditional SES. One significant change was the introduction of spearfishing during the mid-20th century, which is more selective and individualistic compared to other community-centric fishing methods that have existed for generations. This …


Comparing Surface Currents Near The Mouth Of Three Bays Along The U.S. East Coast: Chesapeake Bay, Delaware Bay, And New York Bay, Tal Ezer, Teresa Updyke Jan 2025

Comparing Surface Currents Near The Mouth Of Three Bays Along The U.S. East Coast: Chesapeake Bay, Delaware Bay, And New York Bay, Tal Ezer, Teresa Updyke

CCPO Publications

Monthly surface currents at 2 km resolution near the mouths of three U.S. east coast bays were obtained from high-frequency radars (Coastal Ocean Dynamics Application Radar, CODAR) during 2012–2024. The currents near these bays, the Chesapeake Bay (CB), the Delaware Bay (DB) and the New York Bay (NB) were analyzed to infer similarity and differences, as well as potential common forcing from regional and basin-scale factors. The contribution to flow variability from local and remote forcing is evaluated by comparing surface currents with (a) river discharges into each bay, (b) with local and regional winds, and (c) with the North …


Multi-Model Estimate Of Antarctic Ice-Shelf Basal Mass Budget And Ocean Drivers, Benjamin K. Galton-Fenzi, Richard Porter-Smith, Sue Cook, Eva Cougnon, David E. Gwyther, Wilma G. C. Huneke, Madelaine G. Rosevear, Xylar Asay-Davis, Fabio Boeira Dias, Michael S. Dinniman, David Holland, Kazuya Kusahara, Kaitlin A. Naughten, Keith W. Nicholls, Charles Pelletier, Ole Richter, Hélène Seroussi, Ralph Timmerman Jan 2025

Multi-Model Estimate Of Antarctic Ice-Shelf Basal Mass Budget And Ocean Drivers, Benjamin K. Galton-Fenzi, Richard Porter-Smith, Sue Cook, Eva Cougnon, David E. Gwyther, Wilma G. C. Huneke, Madelaine G. Rosevear, Xylar Asay-Davis, Fabio Boeira Dias, Michael S. Dinniman, David Holland, Kazuya Kusahara, Kaitlin A. Naughten, Keith W. Nicholls, Charles Pelletier, Ole Richter, Hélène Seroussi, Ralph Timmerman

CCPO Publications

Societal adaptation to rising sea levels requires robust projections of the Antarctic Ice Sheet's retreat, particularly due to ocean-driven basal melting of its fringing ice shelves. Recent advances in ocean models that simulate ice-shelf melting offer an opportunity to reduce uncertainties in ice–ocean interactions. Here, we compare several community-contributed, circum-Antarctic ocean simulations to highlight inter-model differences, evaluate agreement with satellite-derived melt rates, and examine underlying physical processes. All but one simulation use a melting formulation depending on both thermal driving (T) and friction velocity (u), which together represent the thermal and ocean current forcings at the …


Using Post-Supercritical Co2-Assisted Method To Deposit Niep Alloy Coating On The Micro-Arc Oxidation Layer Of Az31 Magnesium Alloy And Its Corrosion Behavior Analysis, Kang-Yu Liao, Hung-Hua Sheu, Ming-Yuan Lin, Ming-Chih Kuo, Po-Hsun Wu, Hung-Bin Lee Jan 2025

Using Post-Supercritical Co2-Assisted Method To Deposit Niep Alloy Coating On The Micro-Arc Oxidation Layer Of Az31 Magnesium Alloy And Its Corrosion Behavior Analysis, Kang-Yu Liao, Hung-Hua Sheu, Ming-Yuan Lin, Ming-Chih Kuo, Po-Hsun Wu, Hung-Bin Lee

Journal of Marine Science and Technology–Taiwan

In this study, a Ni-P alloy coating was deposited on the micro arc oxidation (MAO) layer of AZ31 magnesium alloy to improve its corrosion resistance. The MAO layers were prepared under different operated voltages from 300 to 400 V. The results indicated that the optimize operated parameters for MAO layer is at 350 V, the MAO coatings had the most compact microstructure and superior corrosion resistance. In order to improve the corrosion resistance of MAO coating, this study chose to deposit Ni-P alloy coating on the surface of MAO coating via the post supercritical CO2-assisted electroless plating (PSC-CO …


The Effect Of Feedback On A Remote Operator’S Maneuvering Control For Mass Remote Navigation Competency, Hyoseon Hwang, Ik-Hyun Youn Jan 2025

The Effect Of Feedback On A Remote Operator’S Maneuvering Control For Mass Remote Navigation Competency, Hyoseon Hwang, Ik-Hyun Youn

Journal of Marine Science and Technology–Taiwan

The rapid advancement of Maritime Autonomous Surface Ships (MASS) technology has highlighted the growing need for Remote Operators (ROs) to manage MASS effectively. ROs possess specialized competencies in areas such as situational awareness, crisis management, and system operation. Despite the introduction of competency-based training and assessment in the maritime sector through the international convention on standards of training, certification, and watchkeeping for seafarers convention, the framework's implementation remains incomplete, particularly in remote operator training for MASS. This study is purpose to identify which competencies improve rapidly with performance feedback and which improve slowly. This study conducted an experiment to quantitatively …


Evaluation Of Carbon Sequestration In Seagrass Meadows Of Kenting: A Comparative Study With Penghu And Dongsha Island, Zih-Wei Tang, Huei-Fen Chen, Jordi Mahardika Puntu, Ping-Yu Chang, Li Lo, Jian-Jhih Chen, Wen-Chen Chou, Lan-Feng Fan, Ying-Ju Chang Jan 2025

Evaluation Of Carbon Sequestration In Seagrass Meadows Of Kenting: A Comparative Study With Penghu And Dongsha Island, Zih-Wei Tang, Huei-Fen Chen, Jordi Mahardika Puntu, Ping-Yu Chang, Li Lo, Jian-Jhih Chen, Wen-Chen Chou, Lan-Feng Fan, Ying-Ju Chang

Journal of Marine Science and Technology–Taiwan

This study investigates the controlling factors of carbon sequestration (CS) in seagrass bed sediments across three distinct environments in Taiwan: the Kenting (KT) coastal area, the Penghu (PH) open inner bay, and the Dongsha (DS) Atoll lagoon. Actual measurements of the substrate depth beneath the sediment and ground-penetrating radar (GPR) scans of the beach reveal that the coral reef bedrock in KT slopes landward. A field survey of the seagrass area in KT was conducted, and three cross-sectional profiles were analyzed to determine their topography, yielding a median sediment thickness of 88.2cm. Based on these measurements, the sediment volume was …


Calculation Of Aquifer Transmissivity From Borehole Resistance Measurements And Pumping Test Results, Fen-Rong Yang, Chien-Wei Huang, Tien-Kuen Huang Jan 2025

Calculation Of Aquifer Transmissivity From Borehole Resistance Measurements And Pumping Test Results, Fen-Rong Yang, Chien-Wei Huang, Tien-Kuen Huang

Journal of Marine Science and Technology–Taiwan

Transmissivity is a crucial hydrogeological parameter for evaluating groundwater resources. This parameter is conventionally evaluated using pumping tests; however, these tests are costly and can be conducted at few sites. Many researchers have used ground resistance and pumping test data to estimate various hydrogeological parameters. In this study, borehole resistance survey and pumping test data collected by the Taiwan Groundwater Monitoring Network were used to establish the relationship between transmissivity and formation factor for aquifers in the Zhuoshui River alluvial fan. This relationship was then used to estimate the water output of the aforementioned aquifers in a cost-effective manner from …


A Neural Network-Based Sliding Mode Adaptive Control System For Unmanned Surface Vehicles, Sun Qiaomei, An Liang, Jiang Linglin Jan 2025

A Neural Network-Based Sliding Mode Adaptive Control System For Unmanned Surface Vehicles, Sun Qiaomei, An Liang, Jiang Linglin

Journal of Marine Science and Technology–Taiwan

Over the past decades, numerous studies have explored the use of autonomous unmanned surface vehicles (USVs). Successful USV operation requires a robust tracking control system to perform a range of tasks. However, USV dynamics are uncertain, time-varying, and nonlinear. This paper presents a neural network-based sliding mode adaptive control (NNSMAC) system to enhance USV tracking performance. Trajectories were generated using spline and polynomial interpolation based on a set of N predefined waypoints. Simulation results show that the proposed method outperforms traditional sliding mode control in error reduction, enabling more effective tracking.