Oceanography Commons^™

Seasonal Occurrence, Relative Abundance, And Migratory Movements Of Juvenile Sandbar Sharks, Carcharhinus Plumbeus, In Winyah Bay, South Carolina, Caroline Collatos

Electronic Theses and Dissertations

Winyah Bay, located on the coast of South Carolina, is the fourth largest U.S. estuary by discharge rate (Voulgaris et al. 2002), and provides an annually used habitat for juvenile C. plumbeus (Abel et al. 2006, Gary 2009). From May to September 2016 and 2017, we set a total of 303 bottom longlines in middle and lower Winyah Bay to assess sex ratios, size distributions, and catch per unit effort (CPUE), as well as the potential influence of abiotic parameters on CPUE. A subset of eleven juvenile C. plumbeus was tagged with VEMCO (V16-4H) acoustic transmitters to analyze seasonal occurrence, …

Semi-Quantitative Assessment On Winyah Bay's Microplastic Contamination Levels, Samantha Ladewig

Electronic Theses and Dissertations

Although there is much concern globally regarding microplastic contamination in aquatic environments, there is little documentation on microplastic contamination concentrations within South Carolina inland waters and coastal areas. Specifically, Winyah Bay, SC should be of high priority for microplastic contamination evaluations as it is the third largest drainage basin (47,060 km2) and the second largest (157 km2) estuarine system on the east coast of the United States. Today, the general influencing physical factors on microplastic transport are mostly known by the scientific community, however, transport and deposition patterns of microplastics heavily vary by location depending on various physical, chemical, and …

Ocean Impacts On Australian Interannual To Decadal Precipitation Variability, Zachary F. Johnson, Yoshimitsu Chikamoto, Jing-Jia Luo, Takashi Mochizuki

Plants, Soils, and Climate Faculty Publications

In Australia, successful seasonal predictions of wet and dry conditions are achieved by utilizing the remote impact of sea surface temperature (SST) variability in tropical oceans, particularly the Pacific Ocean, on the seasonal timescale. Beyond seasonal timescales, however, it is still unclear which processes and oceans contribute to interannual-to-decadal wet/dry conditions in Australia. This research examines the interannual-to-decadal relationship between global SST anomalies (SSTAs) and Australian wet/dry variability by analyzing observational data and global climate model experiments conducted with the NCAR Community Earth System Model (CESM) and the Model for Interdisciplinary Research on Climate (MIROC). A 10-member ensemble simulation suite …

Presence/Absence And Density Data For Epipelagic Tows Collected During R/V Blazing Seven Cruises Lf2016a And Lf2016b, Northern Gulf Of Mexico From 2016-06-09 To 2016-07-28, Jay R. Rooker, David Wells

DEEPEND Datasets

This dataset reports presence/absence and density data for epipelagic tows collected in the northern Gulf of Mexico during R/V Blazing Seven cruises LF2016A and LF2016B (2016-06-09 to 2016-07-28). Larval fishes were sampled from 48 stations and cruise data were collected at each site including latitude/longitude, date, time, environmental data (temperature, salinity, dissolved oxygen) and Sargassum dry weight. Larval catch data before and after the oil spill will be compared to improve our understanding of the causes of temporal variability as it relates to the Deep-Water Horizon oil spill (DWHOS). Habitat associations of selected taxa (billfishes, tunas, dolphinfishes, flyingfishes) will be …

An Implementation Strategy To Quantify The Marine Microbial Carbon Pump And Its Sensitivity To Global Change, Carol Robinson, Douglas Wallace, Jung-Ho Hyun, Luca Polimene, Ronald Benner, Yao Zhang, Ruanhong Cai, Rui Zhang, Nianzhi Jiao

Faculty Publications

No abstract provided.

Effects Of Natural And Anthropogenic Forcing On Marsh Channel Evolution, Jeremiah Robinson

LSU Master's Theses

Wetlands have many ecological and physical properties that are essential for coastal communities. These ecosystems sustain local economies, provide essential habitats, are a source of numerous ecological and biological services, and protect coastal populations from storms. Of the many wetland types, salt marshes are among the most vulnerable to environmental changes. Salt marshes quickly respond to natural and human-driven perturbations and their high rate of loss in the last century is cause for concern.

In this project the rate of marsh loss driven by channel widening was measured through a comparative analysis of modern high resolution images and historic aerial …

Spatial And Temporal Distributions Of Pelagic Sargassum In The Intra-Americas Sea And Atlantic Ocean, Mengqiu Wang

USF Tampa Graduate Theses and Dissertations

Pelagic Sargassum is one type of marine macroalgae that is known to be abundant in the Gulf of Mexico and Sargasso Sea. It is also known to serve as a critical habitat for many marine animals. In the past few years, large amounts of Sargassum have been reported in the Tropical Atlantic and Caribbean Sea (CS), causing significant environmental and economic problems. The goal of this study is to improve the understanding of Sargassum distributions, quantity, transport pathways, and bloom mechanisms in the CS and Tropic Atlantic through combining a variety of techniques including satellite remote sensing, field and laboratory …

Plastics And Microplastics As Vectors For Bacteria And Human Pathogens, Amanda Lee Laverty

OES Theses and Dissertations

Since plastics degrade very slowly, they remain in the environment on much longer timescales than most natural substrates and can thus provide a novel habitat for colonization by bacterial communities. The full spectrum of relationships between plastics and bacteria, however, is little understood. The objective of this study was to examine marine plastic pollution as a substrate for bacteria, with particular focus on Vibrio spp., including the human pathogens, Vibrio cholerae, Vibrio parahaemolyticus, and Vibrio vulnificus.

Colonization experiments were set up in a tributary of the lower Chesapeake Bay to follow Vibrio spp. colonization and …

Advances In Amino Acid Analysis For Marine Related Matrices And Its Application To Coastal Shelf Settings In The Canadian Arctic, Rachel M. Mcmahon

OES Theses and Dissertations

Amino acids comprise up to 50% of organic matter in cellular material and are a major fraction of oceanic organic carbon. Amino acids are also considered highly labile during organic matter recycling, making them useful proxies for organic carbon cycling. Nevertheless, analysis of individual amino acids has been burdened by lengthy derivatization and complex analysis since the 1950s. In this thesis, I describe the modification of advanced analytical techniques, developed in the biomedical field, for analysis of marine matrices which allow the determination of at least 40 amino acids without the need for lengthy sample preparation and derivatization, twice the …

The Impact Of The Deepwater Horizon Blowout On Historic Shipwreck-Associated Sediment Microbiomes In The Northern Gulf Of Mexico, Leila J. Hamdan, Jennifer Salerno, Allen H. Reed, Samantha B. Joye, Melanie Damour

Faculty Publications

More than 2,000 historic shipwrecks spanning 500 years of history, rest on the Gulf of Mexico seafloor. Shipwrecks serve as artificial reefs and hotspots of biodiversity by providing hard substrate, something rare in deep ocean regions. The Deepwater Horizon (DWH) spill discharged crude oil into the deep Gulf. Because of physical, biological, and chemical interactions, DWH oil was deposited on the seafloor, where historic shipwrecks are present. This study examined sediment microbiomes at seven historic shipwrecks. Steel-hulled, World War II-era shipwrecks and wooden-hulled, 19th century shipwrecks within and outside of the surface oiled area and subsurface plume were examined. Analysis …

Ms Analysis Of A Dilution Series Of Bacteria: Phytoplankton To Improve Detection Of Low Abundance Bacterial Peptides, Emma Timmins-Schiffman, Molly P. Mikan, Ying Sonia Ting, H. Rodger Harvey, Brook L. Nunn

OES Faculty Publications

Assigning links between microbial activity and biogeochemical cycles in the ocean is a primary objective for ecologists and oceanographers. Bacteria represent a small ecosystem component by mass, but act as the nexus for both nutrient transformation and organic matter recycling. There are limited methods to explore the full suite of active bacterial proteins largely responsible for degradation. Mass spectrometry (MS)-based proteomics now has the potential to document bacterial physiology within these complex systems. Global proteome profiling using MS, known as data dependent acquisition (DDA), is limited by the stochastic nature of ion selection, decreasing the detection of low abundance peptides. …

Description And Mechanisms Of The Mid-Year Upwelling In The Southern Caribbean Sea From Remote Sensing And Local Data, Digna T. Rueda-Roa, Tal Ezer, Frank E. Muller-Karger

CCPO Publications

The southern Caribbean Sea experiences strong coastal upwelling between December and April due to the seasonal strengthening of the trade winds. A second upwelling was recently detected in the southeastern Caribbean during June-August, when local coastal wind intensities weaken. Using synoptic satellite measurements and in situ data, this mid-year upwelling was characterized in terms of surface and subsurface temperature structures, and its mechanisms were explored. The mid-year upwelling lasts 6-9 weeks with satellite sea surface temperature (SST) ~1-2°C warmer than the primary upwelling. Three possible upwelling mechanisms were analyzed: cross-shore Ekman transport (csET) due to alongshore winds, wind curl (Ekman …

Missing The Boat? Measuring And Evaluating Local Groundfish Purchases By New England Institutions, Jeffrey K. O'Hara, Loren Mcclenachan

Journal of Ocean and Coastal Economics

The development of local food markets has provided a critical economic opportunity for small farms in New England. The collapse of Gulf of Maine groundfish stocks has motivated an interest in developing similar marketing opportunities for wild-caught, locally abundant seafood. Institutions, particularly schools and colleges, have been identified as a strategic entry point in the supply chain for such products. However, there has been a dearth of research on this topic. We undertake a case study that evaluates purchases of local groundfish by schools and colleges in New England. First, we analyze recently developed secondary data to assess the propensity …

A Novel Multiproxy Approach To Reconstructing Sea Surface Temperature In The Southwestern Gulf Of Mexico, Marissa Anne Vara

LSU Master's Theses

Coral Sr/Ca is a widely-used proxy for sea surface temperature (SST); however, discrepancies in the coral Sr/Ca-SST relationship among colonies of the same species makes uncertainty in absolute temperature reconstructions larger than the climate signal yet climate variability studies are possible. Furthermore, the riverine input of terrestrial carbonate weathering products to the coastal waters can disrupt the coral Sr/Ca-SST signal by changing local seawater chemistry. This study evaluates the fidelity and reproducibly of coral SST proxies (Sr/Ca, Li/Ca, Mg/Li, Sr-U, Mg/Ca, and U/Ca) and a riverine-upwelling proxy (Ba/Ca) in four Orbicella faveolata colonies in two reefs offshore from Veracruz, Mexico …

Developing A Framework To Identify Local Business And Government Vulnerability To Sea-Level Rise: A Case Study Of Coastal Virginia, Sarah L. Stafford, Alexander D. Renaud

May 11, 2018: Adaptation Policy

In this paper we develop methods for identifying local business and government vulnerabilities to sea-level rise and the natural hazards associated with it. Unlike the fairly large literature on measuring social vulnerability to natural hazards, there are very few papers that discuss methods for measuring local business or local government vulnerability even though businesses and governments are also differentially affected natural hazards. Our goal is to create measures that are easily replicable using readily available data and that are easy to explain to local planners, policy makers, and citizens. We implement our measures of local business and government vulnerability for …

Light Availability And Phytoplankton Growth Beneath Arctic Sea Ice: Integrating Observations And Modeling, Victoria J. Hill, Bonnie Light, Michael Steele, Richard C. Zimmerman

OES Faculty Publications

Observations of the seasonal light field in the upper Arctic Ocean are critical to understanding the impacts of changing Arctic ice conditions on phytoplankton growth in the water column. Here we discuss data from a new sensor system, deployed in seasonal ice cover north‐east of Utqiaġvik, Alaska in March 2014. The system was designed to provide observations of light and phytoplankton biomass in the water column during the formation of surface melt ponds and the transition from ice to open water. Hourly observations of downwelling irradiance beneath the ice (at 2.9, 6.9, and 17.9 m depths) and phytoplankton biomass (at …

Morphologic Evolution Of A Nearshore Berm: One Year Monitoring At Ft. Myers Beach, Florida, Kristopher Jason Enfinger

Theses and Dissertations

Nourishment in the form of a nearhsore berm has become an important alternative method to protecting shorelines and introducing sediment back into the littoral system. In 2009, a nearshore berm was constructed at Ft. Myers Beach, Florida by the U.S. Army Corps of Engineers through maintenance dredging of a nearby navigational channel at Matanzas Pass. Constructed in the form of a nearshore bar, the berm was one of the shallowest placements in a low-wave energy setting. The Coastal Research Lab at the University of South Florida (USF-CRL) conducted field monitoring for the first four years after the construction. This project …

Conductivity, Temperature, And Depth (Ctd) Data For Deepend Stations, Cruise Dp05, May 2017, David English, Chuanmin Hu, April Cook, Tracey Sutton

DEEPEND Datasets

Conductivity, temperature, and depth data from the ship's CTD, which was deployed at each of the DEEPEND stations. Depth of cast was variable, but extended from near-surface waters to below the euphotic zone. This data also includes measurements from a red light transmissometer, a chlorophyll fluorometer, and a dissolved oxygen sensor. The data is used in the assessment of the water column's vertical structure, and for comparison with physical models. Data were collected in the northern Gulf of Mexico from May 2-12, 2017.

Conductivity, Temperature And Depth (Ctd) Data For Deepend Stations, Cruise Dp03, May 2016, David English, Chuanmin Hu, April Cook, Tracey Sutton

DEEPEND Datasets

Conductivity, temperature and depth data from the ship's CTD, which is deployed at each of the DEEPEND stations. Depth of cast is variable, but extends from near-surface waters to below the euphotic zone. This data is used in the assessment of the water column's vertical structure, and for comparison with physical models. Data were collected during cruise DP03 in the northern Gulf of Mexico, May 2016.

Assessing Phytoplankton Nutritional Status And Potential Impact Of Wet Deposition In Seasonally Oligotrophic Waters Of The Mid-Atlantic Bight, P. N. Sedwick, P. W. Bernhardt, M. R. Mulholland, R. G. Najjar, L. M. Blumen, B. M. Sohst, C. Sookhdeo, Brittany Widner

OES Faculty Publications

To assess phytoplankton nutritional status in seasonally oligotrophic waters of the southern Mid-Atlantic Bight, and the potential for rain to stimulate primary production in this region during summer, shipboard bioassay experiments were performed using natural seawater and phytoplankton collected north and south of the Gulf Stream. Bioassay treatments comprised iron, nitrate, iron + nitrate, iron + nitrate + phosphate, and rainwater. Phytoplankton growth was inferred from changes in chlorophyll a, inorganic nitrogen, and carbon-13 uptake, relative to unamended control treatments. Results indicated the greatest growth stimulation by iron + nitrate + phosphate, intermediate growth stimulation by rainwater, modest growth …

Concorde Meteorological Analysis (Cma) - Data Guide, Patrick Fitzpatrick, Yee H. Lau

Faculty Publications

CONCORDE is the CONsortium for oil spill exposure pathways in COastal River-Dominated Ecosystems (CONCORDE), and is an interdisciplinary research program funded by the Gulf of Mexico Research Initiative (GoMRI) to conduct scientific studies of the impacts of oil, dispersed oil and dispersant on the Gulf’s ecosystem (Greer et al. 2018). A CONCORDE goal is to implement a synthesis model containing circulation and biogeochemistry components of the Northern Gulf of Mexico shelf system which can ultimately aid in prediction of oil spill transport and impacts.

The CONCORDE Meteorological Analysis (CMA) is an hourly gridded NetCDF dataset which provides atmospheric forcing for …

Biogeochemical Cycling Of Selenium In The Arctic Ocean, Kyle M. Mcquiggan

OES Theses and Dissertations

Changes in the global climate may have a pronounced effect on the biogeochemical cycling of trace elements like selenium (Se) in the Arctic Ocean. This study described the first quantitative examination of the biogeochemical cycle of selenium in the Amerasian Basin, providing the baseline from which future changes can be identified. Aerosol, dissolved and particulate water samples were collected for Se determinations during the U.S. GEOTRACES GN01 Arctic expedition that sampled the two parts of the Amerasian Basin in 2015: The Makarov Basin on the way to the North Pole and the Canada Basin on the return trip to Dutch …

High-Resolution Observations In The Western Mediterranean Sea: The Rep14-Med Experiment, Reiner Onken, Heinz-Volker Fiekas, Laurent Beguery, Ines Borrione, Andreas Funk, Michael Hemming, Jaime Hernandez-Lasheras, Karen J. Heywood, Jan Kaiser, Michaela Knoll, Baptiste Mourre, Paolo Oddo, Pierre-Marie Poulain, Bastien Y. Queste, Aniello Russo, Kiminori Shitashima, Martin Siderius, Elizabeth Thorp Küsel

Electrical and Computer Engineering Faculty Publications and Presentations

The observational part of the REP14-MED experiment was conducted in June 2014 in the Sardo-Balearic Basin west of Sardinia (western Mediterranean Sea). Two research vessels collected high-resolution oceanographic data by means of hydrographic casts, towed systems, and underway measurements. In addition, a vast amount of data was provided by a fleet of 11 ocean gliders, time series were available from moored instruments, and information on Lagrangian flow patterns was obtained from surface drifters and one profiling float. The spatial resolution of the observations encompasses a spectrum over 4 orders of magnitude from O(10¹ m) to O(10⁵ m), and …

Influence Of Black Mangrove Expansion On Salt Marsh Faunal Communities Of Eastern Coastal Louisiana, Christina Powell

LSU Master's Theses

The salt marshes along the Gulf of Mexico provide a critical habitat for many species, but their spatial distribution is changing, because Avicennia germinans (black mangroves) are expanding due to warmer winters. Currently, little is known about how A. germinans are used as habitat providing food and refuge for aquatic fauna. Therefore, the overall goal of this study was to determine how A.germinans expansion into the Spartina alterniflora (smooth cordgrass) marshes of Louisiana’s Mississippi River delta plain affects salt marsh-dependent organisms. This study analyzed three habitat types: Spartina-dominated, Avicennia-dominated, and a mix of the two, focusing on habitat use and …

Numerical Experiment Of Sediment Dynamics Over A Dredged Pit On The Louisiana Shelf, Nazanin Chaichitehrani

LSU Doctoral Dissertations

Sediment transport over Sandy Point dredge pit in the northern Gulf of Mexico was examined using field measurements and a finely resolved numerical model. Delft3D model with well-vetted computational grid and input parameters was used. Numerical experiments were performed to examine the effect of wind-generated waves, wind-driven currents and their interaction on sediment dynamics in our study area during a cold front in November 2014 and fair-weather conditions between July and August of 2015. Sediment dispersal from the lower Mississippi River, sediment resuspension, transport and deposition with high spatial and temporal resolution were simulated. A reliable satellite-derived near-surface suspended particulate …

Carbon Budget Of Tidal Wetlands, Estuaries, And Shelf Waters Of Eastern North America, R. G. Najjar, M. Herrmann, R. Alexander, D. J. Burdige, D. Butman, W.-J. Cai, E. A. Canuel, R. F. Chen, M. A. M. Friedrichs, M. R. Mulholland

OES Faculty Publications

Carbon cycling in the coastal zone affects global carbon budgets and is critical for understanding the urgent issues of hypoxia, acidification, and tidal wetland loss. However, there are no regional carbon budgets spanning the three main ecosystems in coastal waters: tidal wetlands, estuaries, and shelf waters. Here we construct such a budget for eastern North America using historical data, empirical models, remote sensing algorithms, and process‐based models. Considering the net fluxes of total carbon at the domain boundaries, 59 ± 12% (± 2 standard errors) of the carbon entering is from rivers and 41 ± 12% is from the atmosphere, …

Comparison Of A Simplified Cupric Oxide Oxidation Hplc Method With The Traditional Gc-Ms Method For Characterization Of Lignin Phenolics In Environmental Samples (Vol 13, Pg 1, 2015), Luni Sun, Robert G. M. Spencer, Peter J. Hernes, Rachael Y. Dyda, Kenneth Mopper

Chemistry & Biochemistry Faculty Publications

In our article entitled “Comparison of a simplified cupric oxide oxidation HPLC method with the traditional GC-MS method for characterization of lignin phenolics in environmental samples” (Limnol. Oceanogr.: Methods 13, 2015, 1–52), doi: 10.1002/lom3.10001, we would like to correct the errors in Fig. 2 and Table 2 as mentioned below. The label to Fig. 2(a) needs to be transposed as indicated in the corrected Fig. 2 image below.

Natural And Anthropogenic Impacts On Sediment Dynamics And Preservation In Contrasting Mississippi Deltaic Coastal Environments, Jiaze Wang

LSU Doctoral Dissertations

Deltas worldwide share the same sinking problem in face of pressure from natural and anthropogenic activities. Many restoration strategies are being planned or have been implemented in the coasts around the world. However, many conventional hard structure constructions are energy-intensive. There are also associated uncertainties and limitations on the effectiveness and sustainability of these restoration plans. Soft or ecological engineering strategies normally take advantage of or mimic the coastal system self-response and feedbacks to natural and anthropogenic activities. The successful implementation of soft strategies relies on process-based studies on the change of complex coastal system. In addition, post-implementation monitoring work …

Mixing It Up In The Ocean Carbon Cycle And The Removal Of Refractory Dissolved Organic Carbon, Yuan Shen, Ronald Benner

Faculty Publications

A large quantity of reduced carbon is sequestered in the ocean as refractory dissolved molecules that persist through several circuits of global overturning circulation. Key aspects of the cycling of refractory dissolved organic carbon (DOC) remain unknown, making it challenging to predict how this large carbon reservoir will respond to climate change. Herein we investigate mechanisms that remove refractory DOC using bioassay experiments with DOC isolated from surface, mesopelagic and deep waters of the Atlantic Ocean. The isolated DOC was refractory to degradation by native microbial communities, even at elevated concentrations. However, when the refractory DOC was introduced to a …

Effects Of Projected Changes In Wind, Atmospheric Temperature, And Freshwater Inflow On The Ross Sea, Michael S. Dinniman, John M. Klinck, Eileen E. Hofmann, Walker O. Smith Jr.

CCPO Publications

A 5-km horizontal resolution regional ocean-sea ice-ice shelf model of the Ross Sea is used to examine the effects of changes in wind strength, air temperature, and increased meltwater input on the formation of high-salinity shelf water (HSSW), on-shelf transport and vertical mixing of Circumpolar Deep Water (CDW) and its transformation into modified CDW (MCDW), and basal melt of the Ross Ice Shelf (RIS). A 20% increase in wind speed, with no other atmospheric changes, reduced summer sea ice minimum area by 20%, opposite the observed trend of the past three decades. Increased winds with spatially uniform, reduced atmospheric temperatures …