Oceanography Commons^™

Age, Growth, And Reproduction Of Vermilion Snapper (Rhomboplites Aurorubens) In The North-Central Gulf Of Mexico, Trevor Dalton Moncrief

Master's Theses

Vermilion Snapper is a commonly harvested species of reef fish in the northern Gulf of Mexico (GOM). It supports both a large commercial and popular recreational fishery, however knowledge of this fish’s life history is limited spatially. Non-linear curve fitting was used to estimate growth parameters and Akaike information criteria (AIC) was used to determine relative model fit. The 2-parameter von Bertalanffy growth function provided the best model fit and lowest AIC score. Histological examination indicated that Vermilion Snapper are batch spawners with asynchronous oocyte development. Additionally, 17% of Vermilion Snapper in the actively spawning phase containing 24 hour POF’s …

Small-Scale Farming Of Sandfish (Holothuria Scabra) At Unguja Ukuu, Zanzibar, Claire Hacker

Independent Study Project (ISP) Collection

The biological and social components of sandfish farming were studied at Unguja Ukuu, Zanzibar. Measurement of temperature and depth, along with quadrat sampling of substrate and sea cucumbers, led to recommendations for future management of depth, biomass per area, disease and crabs, and substrate. Interviews revealed the role and potential benefits of sea cucumber farming for communities. Several barriers to, and complications with, the expansion of sea cucumber farming were also identified. This study provided information for improvement of this farm and hoped to spread knowledge of sandfish farming to Zanzibaris, who may benefit economically from the practice.

Tourism In Raja Ampat: New Chances And Challenges, Chloe King

Independent Study Project (ISP) Collection

This study focuses on the ways in which the tourism industry in Raja Ampat has contributed to local livelihoods and encouraged the preservation of marine resources, looking specifically at the case of a dive operator and a volunteer tourism operation. The study illuminates the challenges that these operators face when engaging with the local community to protect the environment, and recommends more effective strategies for improving relations between tourism operators and the communities in which they reside. The study ultimately makes the case that the legacy of colonial rule in Western Papua must be a consideration in tourism planning, as …

Separating Decadal Global Water Cycle Variability From Sea Level Rise, B. D. Hamlington, J. T. Reager, M.-H. Lo, K. B. Karnauskas, R. R. Leben

CCPO Publications

Under a warming climate, amplification of the water cycle and changes in precipitation patterns over land are expected to occur, subsequently impacting the terrestrial water balance. On global scales, such changes in terrestrial water storage (TWS) will be reflected in the water contained in the ocean and can manifest as global sea level variations. Naturally occurring climate-driven TWS variability can temporarily obscure the long-term trend in sea level rise, in addition to modulating the impacts of sea level rise through natural periodic undulation in regional and global sea level. The internal variability of the global water cycle, therefore, confounds both …

Actively Forming Kuroko-Type Volcanic-Hosted Massive Sulfide (Vhms) Mineralization At Iheya North, Okinawa Trough, Japan, Christopher J. Yeats, Steven P. Hollis, Angela Halfpenny, Juan-Carlos Corona, Crystal Laflamme, Gordon Southam, Marco Fiorentini, Richard J. Herrington, John Spratt

All Faculty Scholarship for the College of the Sciences

Modern seafloor hydrothermal systems provide important insights into the formation and discovery of ancient volcanic-hosted massive sulfide (VHMS) deposits. In 2010, Integrated Ocean Drilling Program (IODP) Expedition 331 drilled five sites in the Iheya North hydrothermal field in the middle Okinawa Trough back-arc basin, Japan. Hydrothermal alteration and sulfide mineralization is hosted in a geologically complex, mixed sequence of coarse pumiceous volcaniclastic and fine hemipelagic sediments, overlying a dacitic to rhyolitic volcanic substrate. At site C0016, located adjacent to the foot of the actively venting North Big Chimney massive sulfide mound, massive sphalerite-(pyrite-chalcopyrite ± galena)-rich sulfides were intersected (to 30.2% …

Groundwater And Tidal Controls On Wetland Hydrology, Julie J. Metz Wetland Mitigation Bank, Woodbridge, Virginia, Benjamin Stuart Hiza

OES Theses and Dissertations

Julie J. Metz Wetlands Mitigation Bank, a 92-hectare freshwater wetland located in Woodbridge, Virginia, borders the tidally-influenced Neabsco Creek. Seven pods separated by earthen berms were built by Wetland Studies and Solutions Inc. (WSSI) in 1995 and 1997 by removing the toe of small sandy alluvial fans and covering the underlying coarse gravel bed with a low permeability cap. The basal Quaternary gravels were deposited in a creek valley incised into a thick sand-and-clay Cretaceous delta. The alluvial-fan apron developed at the base of steep slopes along the sides of the valley. Pressure transducer data from five monitoring wells along …

Dollars From The Sea: Jacksonville And The Ocean Business, Committee Of 100 Jacksonville Area Chamber Of Commerce

City and Regional Planning -- Florida

Book details Jacksonville's oceanographic history 1967-1974

Cruise Data For Neuston Net And Paired Bongo Net Tows From 48 Stations In The Northern Gulf Of Mexico From R/V Blazing Seven Cruises Lf2016a And Lf2016b, June-July 2016, Jay R. Rooker, R.J. David Wells

DEEPEND Datasets

Shelf and slope waters in the Deep Water Horizon oil spill (DWHOS) area are known to serve as critical spawning, nursery, and foraging habitat of several important oceanic species including billfishes (e.g. blue marlin, white marlin, sailfish), tunas (bluefin tuna, yellowfin tuna), and other pelagic taxa (swordfish, dolphinfishes). The aim of this component was to further investigate potential ecological effects of the DWHOS on pelagic fishes during the early life period. Larval fishes were sampled from 48 stations in the northern Gulf of Mexico and cruise data was collected at each site including latitude/longitude, date, time and environmental data (sea …

Presence/Absence And Density Data For Epipelagic Tows From 48 Stations In The Northern Gulf Of Mexico From R/V Blazing Seven Cruises Lf2015a And Lf2015b June 2015 And July 2015, Jay R. Rooker, R.J. David Wells

DEEPEND Datasets

Larval catch data after the oil spill is being used to improve our understanding of the causes of temporal variability as it relates to the Deep Water Horizon oil spill (DWHOS). Bongo and neuston net tows were conducted at 48 stations in both June and July, 2015 in the northern Gulf of Mexico. Cruise data collected at each site included latitude/longitude, date, time and environmental data (temperature, salinity, dissolved oxygen). The occurrence and density of selected epipelagic (e.g., billfishes, tunas, dolphinfishes, flyingfishes) and deep pelagic (e.g., lanternfishes, bristlemouths, marine hatchetfishes) fish larvae were quantified and are being used to extend …

Latitudinal Position And Trends Of The Intertropical Convergence Zone (Itcz) And Its Relationship With Upwelling In The Southern Caribbean Sea And Global Climate Indices, Kaitlyn E. Colna

USF Tampa Graduate Theses and Dissertations

The Intertropical Convergence Zone (ITCZ) is a feature that results from the ocean-atmosphere interactions in the tropics around the world. The ITCZ is characterized by surface wind convergence, tall storm clouds, and it forms a belt of high time-averaged precipitation around the globe. The ITCZ undergoes seasonal migrations between 5°S and 15°N roughly following the subsolar point on Earth with the seasons, with a mean annual position located slightly above the Equator, between 2° and 5°N.

This study tested the hypothesis that there was a northward shift in the median position of the ITCZ in the first decade of the …

Southern Ocean Transport By Combining Satellite Altimetry And Temperature/Salinity Profile Data, Michael Kosempa

USF Tampa Graduate Theses and Dissertations

Zonal geostrophic velocity fields above 1975 dbar have been estimated for the Southern Ocean from 2004 to 2014 based on sea surface topography observed by Jason altimetry and temperature/salinity measured by Argo autonomous floats. The velocity at 1000 dbar estimated has been validated against Argo drift trajectory at the same pressure level available from the Asia Pacific Data Research Center (APDRC). Errors in mapping of dynamic ocean topography, temperature, and salinity have been quantified using the Southern Ocean State Estimate (SOSE). Analysis of errors reveals significant correlations between depth-dependent and –independent contributions to the integrated transport. Further analysis revealed optimal …

Mass Coral Mortality Under Local Amplification Of 2 °C Ocean Warming, Thomas M. Decarlo, Anne L. Cohen, George T. F. Wong, Kristen A. Davis, Pat Lohman, Keryea Soong

OES Faculty Publications

A 2 °C increase in global temperature above pre-industrial levels is considered a reasonable target for avoiding the most devastating impacts of anthropogenic climate change. In June 2015, sea surface temperature (SST) of the South China Sea (SCS) increased by 2 °C in response to the developing Pacific El Nino. On its own, this moderate, short-lived warming was unlikely to cause widespread damage to coral reefs in the region, and the coral reef "Bleaching Alert" alarm was not raised. However, on Dongsha Atoll, in the northern SCS, unusually weak winds created low-flow conditions that amplified the 2 °C basin-scale …

Climate Change Impacts On Southern Ross Sea Phytoplankton Composition, Productivity, And Export, Daniel E. Kaufman, Marjorie A. M. Friedrichs, Walker O. Smith Jr., Eileen E. Hofmann, Michael S. Dinniman, John C. P. Hemmings

CCPO Publications

The Ross Sea, a highly productive region of the Southern Ocean, is expected to experience warming during the next century along with reduced summer sea ice concentrations and shallower mixed layers. This study investigates how these climatic changes may alter phytoplankton assemblage composition, primary productivity, and export. Glider measurements are used to force a one-dimensional biogeochemical model, which includes diatoms and both solitary and colonial forms of Phaeocystis antarctica. Model performance is evaluated with glider observations, and experiments are conducted using projections of physical drivers for mid-21st and late-21st century. These scenarios reveal a 5% increase in primary productivity …

Impacts Of Oil Spills On Altimeter Waveforms And Radar Backscatter Cross Section, Yongcun Cheng, Jean Tournadre, Xiaofeng Li, Qing Xu, Bertrand Chapron

CCPO Publications

Ocean surface films can damp short capillary-gravity waves, reduce the surface mean square slope, and induce "sigma0 blooms" in satellite altimeter data. No study has ascertained the effect of such film on altimeter measurements due to lack of film data. The availability of Environmental Response Management Application (ERMA) oil cover, daily oil spill extent, and thickness data acquired during the Deepwater Horizon (DWH) oil spill accident provides a unique opportunity to evaluate the impact of surface film on altimeter data. In this study, the Jason-1/2 passes nearest to the DWH platform are analyzed to understand the waveform distortion caused by …

Cruise Data For Neuston Net And Paired Bongo Net Tows From 48 Stations In The Northern Gulf Of Mexico From R/V Blazing Seven Cruises Lf2015a And Lf2015b June 2015 And July 2015, Jay R. Rooker, R.J. David Wells

DEEPEND Datasets

Shelf and slope waters in the Deep Water Horizon oil spill (DWHOS) area are known to serve as critical spawning, nursery, and foraging habitat of several important oceanic species including billfishes (e.g. blue marlin, white marlin, sailfish), tunas (bluefin tuna, yellowfin tuna), and other pelagic taxa (swordfish, dolphinfishes). The aim of this component was to further investigate potential ecological effects of the DWHOS on pelagic fishes during the early life period. Larval fishes were sampled from 48 stations in the northern Gulf of Mexico and cruise data was collected at each site including latitude/longitude, date, time and environmental data (sea …

Experimental Impacts Of Climate Warming And Ocean Carbonation On Eelgrass Zostera Marina, Richard C. Zimmerman, Victoria J. Hill, Malee Jinuntuya, Billur Celebi, David Ruble, Miranda Smith, Tiffany Cedeno, W. Mark Swingle

OES Faculty Publications

CO₂ is a critical and potentially limiting substrate for photosynthesis of both terrestrial and aquatic ecosystems. In addition to being a climate-warming greenhouse gas, increasing concentrations of CO₂ will dissolve in the oceans, eliciting both negative and positive responses among organisms in a process commonly known as ocean acidification. The dissolution of CO₂ into ocean surface waters, however, also increases its availability for photosynthesis, to which the highly successful, and ecologically important, seagrasses respond positively. Thus, the process might be more accurately characterized as ocean carbonation. This experiment demonstrated that CO₂ stimulation of primary production enhances …

Multiple Metabolisms Constrain The Anaerobic Nitrite Budget In The Eastern Tropical South Pacific, Andrew R. Babbin, Brian D. Peters, Calvin W. Mordy, Brittany Widner, Karen L. Casciotti, Bess B. Ward

OES Faculty Publications

The Eastern Tropical South Pacific is one of the three major oxygen deficient zones (ODZs) in the global ocean and is responsible for approximately one third of marine water column nitrogen loss. It is the best studied of the ODZs and, like the others, features a broad nitrite maximum across the low oxygen layer. How the microbial processes that produce and consume nitrite in anoxic waters interact to sustain this feature is unknown. Here we used ¹⁵N-tracer experiments to disentangle five of the biologically mediated processes that control the nitrite pool, including a high-resolution profile of nitrogen loss rates. …

Multiple Mating By Females In The Chesapeake Bay Blue Crab Callinectes Sapidus Population, S. Wells, J. Mcconaugha, L. Horth

OES Faculty Publications

Mature females of the Chesapeake Bay (USA) blue crab Callinectes sapidus population mate multiple times. Microsatellite DNA analysis of sperm stored in the spermathecae has shown that virtually all (~97%, 104 out of 107) females collected in a 2009−2010 study mated with at least 2 males. Enumeration of stored sperm revealed that despite multiple mating, some females did not have enough sperm to fulfill their lifetime reproductive potential, suggesting that female blue crabs may experience varying levels of sperm limitation. This could result from multiple factors. The average body size of males in the population has decreased, which reduces the …

A Six Thousand-Year Record Of Climate And Land-Use Change From Mediterranean Seagrass Mats, Lourdes Lopez-Merino, Nieves Colas-Ruiz, Maria Adame, Oscar Serrano, Antonio Cortizas, Miguel-Angel Mateo

Research outputs 2014 to 2021

The Mediterranean seagrass Posidonia oceanica maintains a biodiverse ecosystem and it is a world-wide important carbon sink. It grows for millennia, accumulating organic-rich soils (mats) beneath the meadows. This marine habitat is protected by the European Union; however, it is declining rapidly due to coastal development. Understanding its response to disturbances could inform habitat restoration, but many environmental impacts predate monitoring programs (years).
This research explores the palaeoecological potential of Posidonia mats to reconstruct six thousand years of environmental change that could have affected Posidonia meadows and, in turn, left an imprint on the mats.
Palynological, microcharcoal, magnetic susceptibility and …

Implications Of Sea Ice On Southern Ocean Microseisms Detected By A Seismic Array In West Antarctica, Martin J. Pratt, Douglas A. Wiens, J. Paul Winberry, Sridhar Anandakrishnan, Garrett G. Euler

All Faculty Scholarship for the College of the Sciences

The proximity of Southern Ocean storms coupled with seasonal variation in sea ice make Antarctica ideal for the study of microseism sources. We explore frequency-dependent beamforming results using a short-duration, 60 km aperture, broad-band seismic array located on the Whillans Ice Stream, West Antarctica. Locations of single-frequency microseism (13–16 s period) generation are in regions where the continental shelf is ice-free, consistent with previous studies, and show Rayleigh wave sources remaining at consistent backazimuths throughout the duration of the array. Beamforming analysis of daily noise correlations shows that long-period double-frequency microseisms (9–11 s) consist predominantly of Rayleigh waves excited by …

Subset Data From The Nauru 1999 And African Monsoon Multidisciplinary Analysis (Amma) 2006 Cruise And Matlab Code For Generating Plots For The Paper: Wong And Minnett (2017): The Response Of The Ocean Thermal Skin Layer To Variations In Incident Infrared Radiation., Elizabeth Wong

Supplementary Data and Tools

Data in this collection is largely comprised of subsetted data from two research cruises, the Nauru cruise held from June to July 1999 and the African Monsoon Multidisciplinary Analysis (AMMA) cruise held from May to July 2006. The data subset is limited to night conditions under low wind speeds of < 10 m/s and consists of the surface fluxes, radiance measurements from the Marine Atmospheric Emitted Radiance Interferometer (M-AERI), the retrievals of the skin sea surface temperatures and skin sea surface temperature profiles from the M-AERI's radiance spectral measurements. Also included are line-by-line-radiative transfer simulations provided by Dr. Goshka Szczodrak, transmission coefficient spectra obtained from the HITRAN database, and wind speed data from the Special Sensing Microwave Imager (SSM/I) version 6. provided by Dr. Chelle Gentemann. Matlab code is provided which reads the datafile (DATA.mat) and outputs the figures illustrated in the paper Wong and Minnett (2017) (https://doi.org/10.1002/2017JC013351).

Data From: Observing System Simulation Experiments For An Array Of Autonomous Biogeochemical Profiling Floats In The Southern Ocean, Igor Kamenkovich, Angelique Haza, Alison R. Gray, Carolina O. Dufour, Zulema Garraffo

Supplementary Data and Tools

Data in this collection is from Observation System Simulation Experiments (OSSEs) that were carried in support of the SOCCOM program. Synthetic profiles were extracted from model-simulated dissolved oxygen and inorganic carbon. Full maps were then reconstructed from these sparse datasets, using objective mapping. For description of the model and reconstruction method please see Kamenkovich, I., A. Haza, A. Gray, C. Dufour, and Z. Garraffo: "Observing System Simulation Experiments for an array of autonomous biogeochemical profiling floats in the Southern Ocean", Journal of Geophysical Research, DOI: 10.1002/2017JC012819

Coral Bleaching And The Effect Of Disturbances On The Damselfish Community On Lizard Island, Australia, Alejandra Munoz

Independent Study Project (ISP) Collection

Coral reefs are characterized by their dynamic ecological processes that supports a high diversity through the recruitment of marine species and temporal disturbances that can have positive effects on the system. In the face of global climate change however, coral reefs face intense coral bleaching and increased degradation as they may begin to have less time to recover between bleaching events in the near future. Little is known on the long term effects of coral bleaching and habitat degradation on reef fish communities and much less is known about the mechanisms that bring about changes to reef fish assemblages.

This …

Upper Water Structure And Mixed Layer Depth In Tropical Waters: The Seats Station In The Northern South China Sea, Jen-Hua Tai, George T. F. Wong, Xiaoju Pan

OES Faculty Publications

The variability of the upper water hydrographic structure, the efficacy of the different schemes for estimating the mixed layer depth (MLD), the inter-comparability estimation of the MLDs and diurnal and intra-annual MLD climatology in the tropical waters in the northern South China Sea were accessed in 702 depth-profiles of potential temperature (θ) and salinity collected in 64 cruises between 17.5 and 18.5°N and 115.3 and 116.3°E from 1997 to 2013. The hydrographic structure may be subdivided into three principal types: the classical type, with quasi-isopycnal surface mixed layer followed by an abrupt increase in the depth-gradient in θ and potential …

Spatial Patterns Of Sea Level Variability Associated With Natural Internal Climate Modes, Weiqing Han, Gerald A. Meehl, Detlef Stammer, Aixue Hu, Benjamin Hamlington, Jessica Kenigson, Hindumathi Palanisamy, Philip Thompson

OES Faculty Publications

Sea level rise (SLR) can exert significant stress on highly populated coastal societies and low-lying island countries around the world. Because of this, there is huge societal demand for improved decadal predictions and future projections of SLR, particularly on a local scale along coastlines. Regionally, sea level variations can deviate considerably from the global mean due to various geophysical processes. These include changes of ocean circulations, which partially can be attributed to natural, internal modes of variability in the complex Earth's climate system. Anthropogenic influence may also contribute to regional sea level variations. Separating the effects of natural climate modes …

Eukaryotic Microbes, Principally Fungi And Labyrinthulomycetes, Dominate Biomass On Bathypelagic Marine Snow, Alexander B. Bochdansky, Melissa A. Clouse, Gerhard J. Herndl

OES Faculty Publications

In the bathypelagic realm of the ocean, the role of marine snow as a carbon and energy source for the deep-sea biota and as a potential hotspot of microbial diversity and activity has not received adequate attention. Here, we collected bathypelagic marine snow by gentle gravity filtration of sea water onto μm filters from similar to 1000 to 3900 m to investigate the relative distribution of eukaryotic microbes. Compared with sediment traps that select for fast-sinking particles, this method collects particles unbiased by settling velocity. While prokaryotes numerically exceeded eukaryotes on marine snow, eukaryotic microbes belonging to two very distant …

Elevated Trace Metal Content Of Prokaryotic Communities Associated With Marine Oxygen Deficient Zones, Daniel C. Ohnemus, Sara Rauschenberg, Gregory A. Cutter, Jessica N. Fitzsimmons, Robert M. Sherrell, Benjamin S. Twining

OES Faculty Publications

Little is known about the trace metal content of marine prokaryotes, in part due to their co-occurrence with more abundant particulate phases in the upper ocean, such as phytoplankton and biogenic detritus, lithogenic minerals, and authigenic Mn and Fe oxyhydroxides. We attempt to isolate these biomass signals in particulate data from the US GEOTRACES Eastern Pacific Zonal Transect (cruise GP16) in the Eastern Tropical South Pacific (ETSP), which exhibited consistent maxima in P and other bioactive trace metals, and minima in particulate Mn, in the oxygen deficient zones (ODZs) of 13 stations. Nitrite maxima and nitrate deficits indicated the presence …

Critical Decisions In Metaproteomics: Achieving High Confidence Protein Annotations In A Sea Of Unknowns, Emma Timmins-Schiffman, Damon H. May, Molly Mikan, Michael Riffle, Chris Frazar, H. R. Harvey, William S. Noble, Brook L. Nunn

OES Faculty Publications

No abstract provided.

Community Production Modulates Coral Reef Ph And The Sensitivity Of Ecosystem Calcification To Ocean Acidification, Thomas M. Decarlo, Anne L. Cohen, George T. F. Wong, Fuh-Kwo Shiah, Steven J. Lentz, Kristen A. Davis, Kathryn E. F. Shamberger, Pat Lohmann

OES Faculty Publications

Coral reefs are built of calcium carbonate (CaCO₃) produced biogenically by a diversity of calcifying plants, animals, and microbes. As the ocean warms and acidifies, there is mounting concern that declining calcification rates could shift coral reef CaCO3 budgets from net accretion to net dissolution. We quantified net ecosystem calcification (NEC) and production (NEP) on Dongsha Atoll, northern South China Sea, over a 2 week period that included a transient bleaching event. Peak daytime pH on the wide, shallow reef flat during the nonbleaching period was ~8.5, significantly elevated above that of the surrounding open ocean (~8.0-8.1) as …

Impact Of Glacial/Interglacial Sea Level Change On The Ocean Nitrogen Cycle, Haojia Ren, Daniel M. Sigman, Alfredo Martínez-García, Robert F. Anderson, Chen Min-Te, Ana Christina Ravelo, Marietta Straub, George T. F. Wong, Gerald H. Haug

OES Faculty Publications

The continental shelves are the most biologically dynamic regions of the ocean, and they are extensive worldwide, especially in the western North Pacific. Their area has varied dramatically over the glacial/interglacial cycles of the last million years, but the effects of this variation on ocean biological and chemical processes remain poorly understood. Conversion of nitrate to N2 by denitrification in sediments accounts for half or more of the removal of biologically available nitrogen ("fixed N") from the ocean. The emergence of continental shelves during ice ages and their flooding during interglacials have been hypothesized to drive changes in sedimentary denitrification. …