Oceanography Commons^™

Tidally Induced Variability At The Chesapeake Bay Entrance, María Andrea Piñones

OES Theses and Dissertations

Time series of current velocity from 6 stations at the Chesapeake Bay entrance were used to study the variability of tidal currents. Particular emphasis was placed on the semidiurnal tidal currents, which explains ~ 70% of the variability of tidal currents. Four different deployments that spanned more than one year showed that the vertical structure of the semidiurnal tidal currents vary seasonally in response to changes in water column stratification. Under destratified conditions favored by wind forcing, the semidiurnal tidal currents rotated cyclonically throughout the water column, thus emulating a Kelvin wave. In contrast, during stratified conditions the tidal currents …

Fortnightly Variability At The Transition Between Two Sub-Estuaries, Mayra Lorena Riveron Enzastiga

OES Theses and Dissertations

Profiles of current velocity from an Acoustic Doppler Current Profiler (ADCP) and of water salinity, temperature and density from a Conductivity-Temperature-Depth (CTD) recorder, were combined with surface salinity, temperature and density from a Conductivity-Temperature (CT) recorder to elucidate the fortnightly variability at the Lafayette River entrance. The Lafayette River connects at its mouth with the Elizabeth River, which is a tributary to the James River in the Chesapeake Bay. Data were collected in four experiments during consecutive spring and neap tides in the autumn of 2000, and in the spring of 2001. Each experiment was carried out for -25 hours …

Correlating Late Pleistocene Deposits On The Coastal Plain Of Virginia With The Glacial-Eustatic Sea-Level Curve, Timothy Wullschleger Scott

OES Theses and Dissertations

Late Pleistocene sediments mapped along Virginia's southeastern coastal plain record deposition by high-frequency cycles during isotope stages 5 to 1. Correlations between several geologic units both south (S) and east (E) of the Chesapeake Bay have proven difficult due to insufficient dating methods. To improve these regional correlations, two members of the Tabb Formation on Virginia's southside and two formations on the southern Delmarva Peninsula were selected for stratigraphic analyses. Ground penetrating radar provided geologic details in areas where samples were collected for optically stimulated luminescence (OSL) dating. The stratigraphically older units, Sedgefield Member of the Tabb Formation (S) and …

Age Validation And Reproductive Biology Of Bluefish, Pomatomus Saltatrix, Along The East Coast Of United States, Eric Robillard

OES Theses and Dissertations

I describe a new preparation technique that increases readability of otoliths, along with criteria for the interpretation of otolith microstructure of bluefish, Pomatomus saltatrix, collected from Florida to New York during 2001-2003 (n = 2652). I validated annulus formation in otoliths for ages 1 to 8 using marginal increment analysis and thus extended validation by four years to include the preponderance of age classes in the catch. Although otoliths are typically superior for ageing, bluefish are routinely aged with scales; thus a side-by-side comparison of otoliths versus scales is necessary before otoliths can supplant scales. When compared, precision …

Interannual Variation Of Stratification In Lower Chesapeake Bay, Christopher S. Katzenmiller

OES Theses and Dissertations

Stratification in the water column can prove to be an important indicator to the state of the water column and ecosystem. The focus of this research is to evaluate trends in stratification in the Lower Chesapeake Bay. Detailed analysis was performed on a 14 year data set to study interannual variation in the region of study. Potential energy anomaly was used to quantify stratification. Potential energy anomaly is the amount of energy required to mix a water column. It is determined from the vertical density structure of density. Potential energy anomaly is the departure of potential energy from climate conditions. …

Modeling The Effects Of Physical And Biogeochemical Processes On Phytoplankton Species And Carbon Production In The Equatorial Pacific Ocean, Baris Salihoglu

OES Theses and Dissertations

The primary objective of this research is to investigate phytoplankton community response to variations in physical forcing and biological processes in the Cold Tongue region of the equatorial Pacific Ocean at 0°N, 140°W. This research objective was addressed using a one-dimensional multi-component lower trophic level ecosystem model that includes detailed algal physiology, such as spectrally-dependent photosynthetic processes and iron limitation on algal growth. The ecosystem model is forced by a one-year (1992) time series of spectrally-dependent light, temperature, and water column mixing obtained from a Tropical Atmosphere-Ocean (TAO) Array mooring. Autotrophic growth is represented by five algal groups, which have …

The Effect Of Submarine Canyon Width And Stratification On Coastal Circulation And Across Shelf Exchange, Kyung-Hoon Hyun

OES Theses and Dissertations

A 3-D ocean circulation model is used to investigate the effect of the width of a submarine canyon and stratification on adjacent coastal circulation and across shelf exchange. Upwelling winds for 20 d drive circulation over six canyons of varying widths (8–60 km), two escarpments to represent infinitely wide canyons, and a generic shelf-slope without a canyon. Also six stratifications whose first internal Rossby radii (a) range over 2–18 km were applied to two canyons (20 and 40 km) to see the effect of stratification. All simulations adjust to the canyon after 5 days spinup and reach an …

Bio-Optical Properties Of The Arctic Waters: Empirical And Theoretical Observations, Jian Wang

OES Theses and Dissertations

Bio-optical observations were made during August 2000 in the Beaufort and Chukchi Seas. Chlorophyll a concentration (Chl) ranged from 0.068 to 18.51 mg chl m⁻³. Both total particulate and phytoplankton absorption at 443 nm were closely correlated with chlorophyll concentration. There is no strong correlation between chlorophyll concentration and absorption by soluble materials or nonpigmented particulates. Absorption, scattering, and attenuation all show strong first-order spectral relationships. Two semianalytical remote sensing reflectance models were evaluated and validated using bio-optical data collected in this region. Both models were proficient at retrieving chlorophyll concentration, phytoplankton absorption coefficients, and particulate backscattering coefficients. …

Estimation Of Primary Production And Carbon Flux In Antarctic Coastal Waters: A Modeling Study, Hae-Cheol Kim

OES Theses and Dissertations

This study presents results from models that are designed to simulate the underwater light field, to simulate phytoplankton primary production, and to estimate the fate of phytoplankton carbon in continental shelf waters of the west Antarctic Peninsula (WAP) and Ross Sea. Simulation of the underwater light field required derivation of new coefficient sets for power function-type cloud cover correction algorithms, which were found to be influenced by multiple reflections between the bottom of clouds and the surface. The coefficient sets indicate that the spectral effect of clouds on the properties of the surface irradiance was spectrally-neutral for wavelengths greater than …

Inner Shelf Circulation In Coastal Virginia: A Data Assimilation Approach, Hector Hito Sepulveda

OES Theses and Dissertations

The primary objective of this dissertation is to describe the tidal and subtidal flow patterns over the inner shelf of the Delmarva Peninsula, located in the Mid-Atlantic Bight of the United States (36.6–38.0 N), north of the Chesapeake Bay. The objective is pursued with a combination of direct measurements and numerical assimilative techniques. The dynamic balance of the study area is little known, and the distribution of tidal properties has not been described for this area since very rough descriptions in the 1950's. Hydrographic and current velocity profiles from four regional cruises in the inner shelf were used to study …

An Investigation Of Dissolved Organic Matter In A Shallow Coastal Bay Subject To Aureococcus Anophagefferens Blooms, Jean-Paul Simjouw

OES Theses and Dissertations

Aureococcus anophagefferens, the pelagophyte responsible for brown tide blooms, was identified in Chincoteague Bay in 1997 and has “bloomed” there since at least 1998. Aureococcus anophagefferens is capable of using dissolved organic nitrogen (DON) and dissolved organic carbon (DOC) substrates to support growth, and this utilization is hypothesized to give the organism a competitive advantage relative to other phytoplankton when inorganic nutrient concentrations are low or depleted. Because previous studies suggest dissolved organic matter (DOM) is important in initiating and sustaining brown tide blooms, a field study of the variations in DOC concentration and DOM composition was performed at …

Inter-Annual To Inter-Decadal Variability Of Upwelling And Anchovy Population Off Northern Chile, Jose L. Blanco-Garcia

OES Theses and Dissertations

The coastal ocean of northern Chile has persistent wind-driven upwelling that produces high nutrient and chlorophyll concentrations in a narrow band along the coast. The objective of this thesis is to study the low frequency temporal variability of the upwelling system, to understand the spatial and temporal changes in the wind field, and how these changes may affect the upwelling and anchovy variability. Data used in this thesis includes time series of wind, sea level, sea surface temperature, and atmospheric pressure at coastal stations, from 1960 to 2003, and oceanographic and acoustic cruises for the period 1993–2003. The time series …

Wind-Induced Exchange In Semi-Enclosed Basins, Rosario Sanay

OES Theses and Dissertations

The wind-induced circulation over laterally varying bathymetry was investigated in homogeneous and in stratified systems using the three-dimensional Regional Ocean Model (ROMS). For homogeneous systems, the focus was to describe the influence of the earth's rotation on the lateral distribution of the flow with particular emphasis on the transverse circulation. Along-basin wind-stress with no rotation caused a circulation dominated by an axially symmetric transverse structure consisting of downwind flow over the shoals and upwind flow in the channel along the whole domain. Transverse circulation was important only at the head of the system where the water sank and reversed direction …

Sea Level Slopes And Volume Fluxes Produced By Atmosphere Forcing In Chesapeake Bay, David Salas Monreal

OES Theses and Dissertations

Year long time series at eight stations in the Chesapeake Bay and inner shelf were used to determine the relative influence of wind, barometric pressure and thermosteric effects on subtidal sea level variability and slopes. Special emphasis was placed on the lower Chesapeake Bay, where inverse barometric effects accounted for up to 33% of the subtidal sea level variations and thermosteric effects accounted for less than 1 % of the variations. The greatest thermosteric influence was noted at the southernmost, saltier and shallower location (Chesapeake Bay Bridge Tunnel). Wind forcing accounted for most of this station's variability, making up more …

Modeling The Biogeochemical Cycle Of Selenium In The San Francisco Bay, Shannon L. Meseck

OES Theses and Dissertations

Due to recent concerns about selenium toxicity in the San Francisco Bay and the roles of refinery and San Joaquin River inputs on the selenium cycle, the model ECoS 3 (distributed from Plymouth Marine Laboratory, United Kingdom) was modified to simulate the biogeochemical cycle of selenium in the Northern Reach. The model is designed to simulate salinity, total suspended material, phytoplankton concentrations, dissolved selenium and its speciation (selenite, selenate, and organic selenide), and particulate selenium and its speciation (selenite + selenate, elemental selenium, and organic selenide). Actual data from 1999 were used to calibrate the model, while data from other …

Hydrographic Variability On Decadal And Interdecadal Scales In The Northern Gulf Of Alaska, Nandita Sarkar

OES Theses and Dissertations

The mixed layer depth (MLD) in the North Pacific is important to vertical mixing and hence the flux nutrients into the euphotic zone. A time series of hydrographic measurements, tem perature and salinity versus depth, at a coastal site in the northern Gulf of Alaska is used to determine the seasonal and interannual variations in the MLD. Data from this station called GAK 1 (59°50.7‘X. 149C28.0'\V) in 203 m of water begin in 1974 and end in 1998. The MLD changes seasonally from about 50 m in summer to more than 130 m in winter. These changes are in response …

Trichodesmium Spp.: Numerical Studies Of Resource Competition, Carbohydrate Ballasting, And Remote-Sensing Reflectance, Tonya Denise Clayton

OES Theses and Dissertations

In recent years, a new appreciation for the role of diazotrophy in the oceans has emerged. This dissertation reports on three modeling studies designed to investigate ecological processes associated with Trichodesmium spp., the most conspicuous marine diazotroph: (1) characterization of a generalized model Trichodesmium and issues of macronutrient resource competition; (2) carbohydrate ballasting by Trchodesmium and implications for the formation of surface accumulations; and (3) the vertical distribution of Trichodesmium and implications for detection from space.

The first study focuses on issues of nitrogen and phosphorus competition and ecosystem structure. It utilizes a simple ecosystem model that includes dissolved nitrogen …

Transverse Variability Of The Flow And Density In Inlets Of Southern Chile, Mario Arturo Cáceres Muñoz

OES Theses and Dissertations

Measurements of velocity and density profiles were made to describe the flow transverse structure in three inlets of southern Chile. The inlets show marked differences in their transverse dynamics in response to external forcing. In Aysen Fjord (45.2°S) the mean flow showed a three layer structure that was consistent with up-fjord wind-induced exchange, while in Chacao Channel (41.8°S), the mean flow exhibited predominantly a lateral structure that featured sharp velocity shears. In both cases, a bank in the center of the sections seemed to play an important role in shaping the mean flows. In Ventisquero Sound (44.4°S), the presence of …

Dynamical Sedimentary Models Of Shallow Marine Environments, Yong Zhang

OES Theses and Dissertations

This treatise represents a contribution of quantitative, dynamical sedimentary modeling to the analytical understanding of sedimentary processes in shallow marine environments. The dynamical sedimentary models in this treatise numerically simulate the sedimentary processes from an event time scale, based on the fundamental physics of sediment dynamics in coastal and shelf depositional environments, to a longer, facies time scale. The simulated geologic processes serve to the illustrate shoreface equilibrium profile, shelf storm bed generation, and the shelf sedimentary facies system.

This treatise presents a nearshore profile evolution model for the abandoned Huanghe Delta, a two-dimensional storm deposition model, and a sedimentary …

Morphostatic Long-Term Hypsometric Analysis Of Coastal Bay Environments: Hog Island Bay, Virginia, Kathleen Marie Overman

OES Theses and Dissertations

Sea level has been rising at a variable rate since the end of the last glaciation approximately 18,000 years ago. As the transgressing sea inundates the shore areas a series of landform state changes occur in coastal regions. One such change of state in a coastal paleo-river channel is from an estuary into a coastal lagoon. At large temporal intervals (thousands of years) the hypsometry of a coastal lagoon varies as a result of sea level rise due to these changes of state. Using a morphostatic technique, the time period in which an estuary transforms into a coastal lagoon can …

Coastal Ocean Morphodynamics And The Resulting Erosion And Deposition: An Analytical Approach, Shejun Fan

OES Theses and Dissertations

Coastal ocean morphodynamics is the study of the morphological change of the coastal ocean system. Environmental conditions, such as climatic and geological controls, are exogenous inputs of the system, which are responsible for geographic variation among coastal oceans. In the coastal ocean system, coastal morphological changes are the results of a series of morphodynamical processes. In this treatise, quantitative, dynamical sedimentary models are developed to provide an analytical understanding of morphodynamical processes in coastal ocean environments. These dynamical sedimentary models numerically simulate the sedimentary processes over a range of time scales from an event time scale, based on the fundamental …

Tidal And Subtidal Lateral Structures Of Density And Velocity In The Chesapeake Bay Entrance, Austreberto Cristobal Reyes-Hernandez

OES Theses and Dissertations

Hydrographic and velocity data collected along the Chesapeake Bay Entrance during seven 25-hours cruises centered around neap or spring tides, were used to assess the fortnightly variability in the transverse structure of the tidal and subtidal density and velocity fields. Amplitude and phase of the semidiurnal and diurnal harmonics reflected the influence of bathymetry, buoyancy conditions and fortnightly variability. Tidal amplitudes were almost twice as large in springs than in neaps. Both Chesapeake and North Channels had similar along-channel amplitudes, which suggested a higher vertically integrated mixing energy in North Channel. Tidal velocity convergences were more intense for springs than …

Nitrate Reductase Activity, Nitrate Uptake And Iodine Speciation In The Marine Environment, Chin-Chang Hung

OES Theses and Dissertations

The present method for the determination of new production (NP) by measuring the uptake of added ¹⁵NO₃^– suffers from a number of limitations. In an attempt to improve this situation, this research examined the possibility of estimating ¹⁵NO₃– uptake by measuring the activity of nitrate reductase (NRA). In addition, because it has long been suspected that the biological reduction of IO₃^– to I^– may be mediated by nitrate reductase (NR), this research investigated the ability of NR to catalyze the reduction of iodate to iodide.

An improved method for the determination …

Physical Control Of Biological Processes In The Central Equatorial Pacific: A Data Assimilative Modeling Study, Marjorie Anne Macwhorter Friedrichs

OES Theses and Dissertations

A five-component data assimilative ecosystem model is developed in order to investigate the effects of physical processes encompassing a wide range of space and time scales, on the lower trophic levels of the highly dynamic central equatorial Pacific (140°W). Many of the biological processes included in the ecosystem model respond to environmental fluctuations with time scales between one and ten days, which are not typically resolved by basin to global scale circulation models. Therefore, the ecosystem model is forced using daily observations from the TAO mooring array. Model simulations successfully reproduce data collected both during and after the 1991–92 El …

The Impacts Of External Nutrient Sources On Marine Phytoplankton In An Eastern Shore Sea-Side Estuary, Claudette Lajoie Jenkins

OES Theses and Dissertations

The Eastern Shore of Virginia (Greens Creek) as well as a large portion of the North Atlantic coastline is characterized by estuarine systems not dominated by large river systems. Instead, small freshwater creeks influence many coastal systems yet little information has been documented on their ecological significance. The focus of this research is to identify the biogeochemical and physical interactions within an estuarine water-column and understand the importance of freshwater sources in governing phytoplankton production. The hypothesis of this research is that increases in external nutrient loading into Greens Creek will not result in an increase in primary production. The …

A Coupled Bio-Optical And Mixed Layer Model For The Equatorial Pacific, James Vincent Koziana

OES Theses and Dissertations

A one dimensional coupled bio-optical and mixed layer model is developed and applied to problems involving the role of phytoplankton-induced turbidity (PIT) on the vertical structure and heating of the upper ocean in the Equatorial Pacific Ocean. The bio-optical and mixed layer model for optically pure sea water was forced with climatological environmental conditions to provide a reference simulation for 140°W in the eastern Equatorial Pacific Ocean. This reference simulation was used for comparison to other simulations which considered the effects of variations in wind stress and solar input for a homogeneous chlorophyll a profile and variations in the magnitude …

Ocean Surface Maps From Blending Disparate Data Through Normal Mode Analysis, William John Schulz Jr.

OES Theses and Dissertations

Rapid environmental assessment is conducted using disparate data sources in the northwestern Gulf of Mexico. An overview of significant physical features in the Gulf highlights the complexities of the large and meso-scale circulations. Spectral analysis of high resolution current meter and drifter data reveals the significant forcing features detectable by readily available observing techniques. These observations are combined with boundary data extracted from the U.S. Navy's Modular Ocean Data Assimilation System (MODAS) through Normal Mode Analysis (NMA). The NMA blending process is described, and surface maps of velocity and convergence are produced. Using statistical and qualitative techniques, the NMA generated …

Studies Of Warm-Core Rings Using A Particle-In-Cell Method, John James Holdzkom Ii

OES Theses and Dissertations

A particle-in-cell (PIC) model is developed and applied to problems involving the evolution of warm-core rings. Such models are a hybrid of conventional Eulerian and Lagrangian models. They are ideally suited for problems in which a lower layer outcrops to the surface, such as at the boundary of a ring.

The model is developed in three implementations. First, for purposes of model validation, a reduced gravity model is described. The PIC model reproduces the essential characteristics of analytical solutions to the reduced gravity equations and integral invariants are conserved to a high degree. Next, a 1.5-layer model is developed and …

Modeling Environmental Effects On Msx Prevalence And Intensity In Eastern Oyster (Crassostrea Virginica) Populations, Michelle Christine Paraso

OES Theses and Dissertations

An oyster population model coupled with a model for Haplosporidium nelsoni, the causative agent of the oyster disease MSX, was used with salinity time-series constructed from Delaware River flow measurements to study environmentally-induced variations in the annual cycle of this disease. Simulations with this model were designed to investigate the effect of increased or decreased spring freshwater discharge, the timing of high freshwater runoff, the presence or absence of a fall or late spring phytoplankton bloom, and the occurrence of a warm winter on MSX prevalence and intensity in Delaware Bay oyster populations. Model simulations for the lower Bay site …

Non-Volatile Dissolved Organic Iodine In Marine Water, Xianhao Cheng

OES Theses and Dissertations

An analytical scheme for the determination of marine DOI has been established. The concentration of DOI is estimated as total iodine (TI) minus total inorganic iodine (TII). The concentration of total iodine is determined as [special characters omitted] after DOI has been oxidized to inorganic iodine quantitatively by intensive UV-irradiation and all the inorganic iodine in the samples had been converted to [special characters omitted] by the addition of NaClO.

Production of DOI in seawater can be via both non-phytoplankton and phytoplankton related processes. In the former, iodide is converted to DOI. In the latter, most likely, iodate is converted …