Oceanography Commons^™

Robustness Of Observation-Based Decadal Sea Level Variability In The Indo-Pacific Ocean, A. G. Nidheesh, M. Lengaigne, J. Vialard, T. Izumo, A. S. Unnikrishnan, B. Meyssignac, B. Hamlington, C. De Boyer Montegut

OES Faculty Publications

We examine the consistency of Indo-Pacific decadal sea level variability in 10 gridded, observation-based sea level products for the 1960-2010 period. Decadal sea level variations are robust in the Pacific, with more than 50% of variance explained by decadal modulation of two flavors of El Nino-Southern Oscillation (classical ENSO and Modoki). Amplitude of decadal sea level variability is weaker in the Indian Ocean than in the Pacific. All data sets indicate a transmission of decadal sea level signals from the western Pacific to the northwest Australian coast through the Indonesian throughflow. The southern tropical Indian Ocean sea level variability is …

Investigating Physical Processes Associated With Chesapeake Bay And Changjiang Estuary, Arash Niroomandi

Civil & Environmental Engineering Theses & Dissertations

Coastal and estuaries are landforms that not only have great impacts on large marine ecosystem, but also play a significant role in moderating or aggravating natural hazards and erosion risks that are expected to increase with climate change. This dissertation explores some of the concerns associated with coasts and coastal systems. In the second chapter, a thirty seven year wave hindcast (1979-2015) in Chesapeake Bay using NCEP's Climate Forecast System Reanalysis (CFSR) wind is presented. The long-term significant wave heights are generated by the third-generation nearshore wave model SWAN, which is validated using the wave height measurements at buoy stations …

Analysis Of Virginia Barrier Island Shoreline Movement And Correlations To Sea Level, Wave Height Changes, And Teleconnection Patterns, James Daniel Haluska

OES Theses and Dissertations

The Virginia barrier islands stretch from Assateague Island in the north to Fisherman’s Island in the south. This string of islands is subject to frequent North Atlantic extra-tropical storm and hurricane influence. In addition, sea level rise has the potential to cause continued shoreline loss and inlet widening for this island group. This dissertation describes the effect of sea level rise, changes in wave height, and teleconnection pattern (AO, NAO, and MEI) correlations to shoreline location changes to the islands and inlet location and width changes. Locations of island shorelines were determined from satellite and aircraft images using ArcGIS software …

Influence Of Tides And Mesoscale Eddies In The Ross Sea, Stefanie Lynn Mack

OES Theses and Dissertations

The Ross Sea is the most biologically productive region in the Southern Ocean. Primary production is controlled by dissolved iron (dFe), a limiting micronutrient. The main focus of this thesis, motivated by the PRISM-RS project, is to investigate how tides and mesoscale eddies affect the pathways of dFe to the surface ocean.

A regional ocean model with four hindcast simulations are used. Tidal forcing is added to simulations and mesoscale eddies are resolved by changing the horizontal grid resolution from 5 to 1.5 km. Simulations cover 1.5 years, ending at the time of the PRISM-RS cruise in early 2012. An …

Comment On "Using An Adcp To Estimate Turbulent Kinetic Energy Dissipation Rate In Sheltered Coastal Waters", Ann E. Gargett

CCPO Publications

Greene et al. revisit the suggestion that the turbulent kinetic energy dissipation rate could be estimated through a "large-eddy estimate," employing acoustic measurements of velocity fields associated with the largest energy-containing scales of ocean turbulence. While the large-eddy estimate as originally proposed used vertical velocity and a vertical eddy length scale, Greene et al. chose instead to substitute a horizontal length scale for the latter. This comment argues that combining a horizontal scale for length with a vertical velocity scale produces a large-eddy estimate of the dissipation rate that is accurate only if the energy-containing eddies are isotropic, and that …

Separating Decadal Global Water Cycle Variability From Sea Level Rise, B. D. Hamlington, J. T. Reager, M.-H. Lo, K. B. Karnauskas, R. R. Leben

CCPO Publications

Under a warming climate, amplification of the water cycle and changes in precipitation patterns over land are expected to occur, subsequently impacting the terrestrial water balance. On global scales, such changes in terrestrial water storage (TWS) will be reflected in the water contained in the ocean and can manifest as global sea level variations. Naturally occurring climate-driven TWS variability can temporarily obscure the long-term trend in sea level rise, in addition to modulating the impacts of sea level rise through natural periodic undulation in regional and global sea level. The internal variability of the global water cycle, therefore, confounds both …

Groundwater And Tidal Controls On Wetland Hydrology, Julie J. Metz Wetland Mitigation Bank, Woodbridge, Virginia, Benjamin Stuart Hiza

OES Theses and Dissertations

Julie J. Metz Wetlands Mitigation Bank, a 92-hectare freshwater wetland located in Woodbridge, Virginia, borders the tidally-influenced Neabsco Creek. Seven pods separated by earthen berms were built by Wetland Studies and Solutions Inc. (WSSI) in 1995 and 1997 by removing the toe of small sandy alluvial fans and covering the underlying coarse gravel bed with a low permeability cap. The basal Quaternary gravels were deposited in a creek valley incised into a thick sand-and-clay Cretaceous delta. The alluvial-fan apron developed at the base of steep slopes along the sides of the valley. Pressure transducer data from five monitoring wells along …

Mass Coral Mortality Under Local Amplification Of 2 °C Ocean Warming, Thomas M. Decarlo, Anne L. Cohen, George T. F. Wong, Kristen A. Davis, Pat Lohman, Keryea Soong

OES Faculty Publications

A 2 °C increase in global temperature above pre-industrial levels is considered a reasonable target for avoiding the most devastating impacts of anthropogenic climate change. In June 2015, sea surface temperature (SST) of the South China Sea (SCS) increased by 2 °C in response to the developing Pacific El Nino. On its own, this moderate, short-lived warming was unlikely to cause widespread damage to coral reefs in the region, and the coral reef "Bleaching Alert" alarm was not raised. However, on Dongsha Atoll, in the northern SCS, unusually weak winds created low-flow conditions that amplified the 2 °C basin-scale …

Climate Change Impacts On Southern Ross Sea Phytoplankton Composition, Productivity, And Export, Daniel E. Kaufman, Marjorie A. M. Friedrichs, Walker O. Smith Jr., Eileen E. Hofmann, Michael S. Dinniman, John C. P. Hemmings

CCPO Publications

The Ross Sea, a highly productive region of the Southern Ocean, is expected to experience warming during the next century along with reduced summer sea ice concentrations and shallower mixed layers. This study investigates how these climatic changes may alter phytoplankton assemblage composition, primary productivity, and export. Glider measurements are used to force a one-dimensional biogeochemical model, which includes diatoms and both solitary and colonial forms of Phaeocystis antarctica. Model performance is evaluated with glider observations, and experiments are conducted using projections of physical drivers for mid-21st and late-21st century. These scenarios reveal a 5% increase in primary productivity …

Impacts Of Oil Spills On Altimeter Waveforms And Radar Backscatter Cross Section, Yongcun Cheng, Jean Tournadre, Xiaofeng Li, Qing Xu, Bertrand Chapron

CCPO Publications

Ocean surface films can damp short capillary-gravity waves, reduce the surface mean square slope, and induce "sigma0 blooms" in satellite altimeter data. No study has ascertained the effect of such film on altimeter measurements due to lack of film data. The availability of Environmental Response Management Application (ERMA) oil cover, daily oil spill extent, and thickness data acquired during the Deepwater Horizon (DWH) oil spill accident provides a unique opportunity to evaluate the impact of surface film on altimeter data. In this study, the Jason-1/2 passes nearest to the DWH platform are analyzed to understand the waveform distortion caused by …

Experimental Impacts Of Climate Warming And Ocean Carbonation On Eelgrass Zostera Marina, Richard C. Zimmerman, Victoria J. Hill, Malee Jinuntuya, Billur Celebi, David Ruble, Miranda Smith, Tiffany Cedeno, W. Mark Swingle

OES Faculty Publications

CO₂ is a critical and potentially limiting substrate for photosynthesis of both terrestrial and aquatic ecosystems. In addition to being a climate-warming greenhouse gas, increasing concentrations of CO₂ will dissolve in the oceans, eliciting both negative and positive responses among organisms in a process commonly known as ocean acidification. The dissolution of CO₂ into ocean surface waters, however, also increases its availability for photosynthesis, to which the highly successful, and ecologically important, seagrasses respond positively. Thus, the process might be more accurately characterized as ocean carbonation. This experiment demonstrated that CO₂ stimulation of primary production enhances …

Multiple Metabolisms Constrain The Anaerobic Nitrite Budget In The Eastern Tropical South Pacific, Andrew R. Babbin, Brian D. Peters, Calvin W. Mordy, Brittany Widner, Karen L. Casciotti, Bess B. Ward

OES Faculty Publications

The Eastern Tropical South Pacific is one of the three major oxygen deficient zones (ODZs) in the global ocean and is responsible for approximately one third of marine water column nitrogen loss. It is the best studied of the ODZs and, like the others, features a broad nitrite maximum across the low oxygen layer. How the microbial processes that produce and consume nitrite in anoxic waters interact to sustain this feature is unknown. Here we used ¹⁵N-tracer experiments to disentangle five of the biologically mediated processes that control the nitrite pool, including a high-resolution profile of nitrogen loss rates. …

Multiple Mating By Females In The Chesapeake Bay Blue Crab Callinectes Sapidus Population, S. Wells, J. Mcconaugha, L. Horth

OES Faculty Publications

Mature females of the Chesapeake Bay (USA) blue crab Callinectes sapidus population mate multiple times. Microsatellite DNA analysis of sperm stored in the spermathecae has shown that virtually all (~97%, 104 out of 107) females collected in a 2009−2010 study mated with at least 2 males. Enumeration of stored sperm revealed that despite multiple mating, some females did not have enough sperm to fulfill their lifetime reproductive potential, suggesting that female blue crabs may experience varying levels of sperm limitation. This could result from multiple factors. The average body size of males in the population has decreased, which reduces the …

Upper Water Structure And Mixed Layer Depth In Tropical Waters: The Seats Station In The Northern South China Sea, Jen-Hua Tai, George T. F. Wong, Xiaoju Pan

OES Faculty Publications

The variability of the upper water hydrographic structure, the efficacy of the different schemes for estimating the mixed layer depth (MLD), the inter-comparability estimation of the MLDs and diurnal and intra-annual MLD climatology in the tropical waters in the northern South China Sea were accessed in 702 depth-profiles of potential temperature (θ) and salinity collected in 64 cruises between 17.5 and 18.5°N and 115.3 and 116.3°E from 1997 to 2013. The hydrographic structure may be subdivided into three principal types: the classical type, with quasi-isopycnal surface mixed layer followed by an abrupt increase in the depth-gradient in θ and potential …

Spatial Patterns Of Sea Level Variability Associated With Natural Internal Climate Modes, Weiqing Han, Gerald A. Meehl, Detlef Stammer, Aixue Hu, Benjamin Hamlington, Jessica Kenigson, Hindumathi Palanisamy, Philip Thompson

OES Faculty Publications

Sea level rise (SLR) can exert significant stress on highly populated coastal societies and low-lying island countries around the world. Because of this, there is huge societal demand for improved decadal predictions and future projections of SLR, particularly on a local scale along coastlines. Regionally, sea level variations can deviate considerably from the global mean due to various geophysical processes. These include changes of ocean circulations, which partially can be attributed to natural, internal modes of variability in the complex Earth's climate system. Anthropogenic influence may also contribute to regional sea level variations. Separating the effects of natural climate modes …

Eukaryotic Microbes, Principally Fungi And Labyrinthulomycetes, Dominate Biomass On Bathypelagic Marine Snow, Alexander B. Bochdansky, Melissa A. Clouse, Gerhard J. Herndl

OES Faculty Publications

In the bathypelagic realm of the ocean, the role of marine snow as a carbon and energy source for the deep-sea biota and as a potential hotspot of microbial diversity and activity has not received adequate attention. Here, we collected bathypelagic marine snow by gentle gravity filtration of sea water onto μm filters from similar to 1000 to 3900 m to investigate the relative distribution of eukaryotic microbes. Compared with sediment traps that select for fast-sinking particles, this method collects particles unbiased by settling velocity. While prokaryotes numerically exceeded eukaryotes on marine snow, eukaryotic microbes belonging to two very distant …

Elevated Trace Metal Content Of Prokaryotic Communities Associated With Marine Oxygen Deficient Zones, Daniel C. Ohnemus, Sara Rauschenberg, Gregory A. Cutter, Jessica N. Fitzsimmons, Robert M. Sherrell, Benjamin S. Twining

OES Faculty Publications

Little is known about the trace metal content of marine prokaryotes, in part due to their co-occurrence with more abundant particulate phases in the upper ocean, such as phytoplankton and biogenic detritus, lithogenic minerals, and authigenic Mn and Fe oxyhydroxides. We attempt to isolate these biomass signals in particulate data from the US GEOTRACES Eastern Pacific Zonal Transect (cruise GP16) in the Eastern Tropical South Pacific (ETSP), which exhibited consistent maxima in P and other bioactive trace metals, and minima in particulate Mn, in the oxygen deficient zones (ODZs) of 13 stations. Nitrite maxima and nitrate deficits indicated the presence …

Critical Decisions In Metaproteomics: Achieving High Confidence Protein Annotations In A Sea Of Unknowns, Emma Timmins-Schiffman, Damon H. May, Molly Mikan, Michael Riffle, Chris Frazar, H. R. Harvey, William S. Noble, Brook L. Nunn

OES Faculty Publications

No abstract provided.

Community Production Modulates Coral Reef Ph And The Sensitivity Of Ecosystem Calcification To Ocean Acidification, Thomas M. Decarlo, Anne L. Cohen, George T. F. Wong, Fuh-Kwo Shiah, Steven J. Lentz, Kristen A. Davis, Kathryn E. F. Shamberger, Pat Lohmann

OES Faculty Publications

Coral reefs are built of calcium carbonate (CaCO₃) produced biogenically by a diversity of calcifying plants, animals, and microbes. As the ocean warms and acidifies, there is mounting concern that declining calcification rates could shift coral reef CaCO3 budgets from net accretion to net dissolution. We quantified net ecosystem calcification (NEC) and production (NEP) on Dongsha Atoll, northern South China Sea, over a 2 week period that included a transient bleaching event. Peak daytime pH on the wide, shallow reef flat during the nonbleaching period was ~8.5, significantly elevated above that of the surrounding open ocean (~8.0-8.1) as …

Impact Of Glacial/Interglacial Sea Level Change On The Ocean Nitrogen Cycle, Haojia Ren, Daniel M. Sigman, Alfredo Martínez-García, Robert F. Anderson, Chen Min-Te, Ana Christina Ravelo, Marietta Straub, George T. F. Wong, Gerald H. Haug

OES Faculty Publications

The continental shelves are the most biologically dynamic regions of the ocean, and they are extensive worldwide, especially in the western North Pacific. Their area has varied dramatically over the glacial/interglacial cycles of the last million years, but the effects of this variation on ocean biological and chemical processes remain poorly understood. Conversion of nitrate to N2 by denitrification in sediments accounts for half or more of the removal of biologically available nitrogen ("fixed N") from the ocean. The emergence of continental shelves during ice ages and their flooding during interglacials have been hypothesized to drive changes in sedimentary denitrification. …

Phytoplankton Plastid Proteomics: Cracking Open Diatoms To Understand Plastid Biochemistry Under Iron Limitation, Skyler J. Nunn, Phoebe Dreux Chappell, Kristofer Gomes, Anasthasia Bonderenko, Bethany D. Jenkins, Brook L. Nunn

OES Faculty Publications

Diatoms, such as Thalassiosira pseudonana, are important oceanic primary producers, as they sequester carbon dioxide (CO₂) out of the atmosphere, die, and precipitate to the ocean floor. In many areas of the world’s oceans, phytoplankton, such as diatoms, are limited in growth by the availability of iron (Fe). Fe is an essential nutrient for phytoplankton, as it is central in the electron transport chain component of photosynthesis. Through this study, we examined if Fe-limitation makes a significant difference in the proteins expressed within the chloroplast, the power source for diatoms. Here, we utilized a new plastid isolation technique specific …

Spaceborne Synthetic Aperture Radar Survey Of Subsidence In Hampton Roads, Virginia (Usa), D.P.S. Bekaert, B. D. Hamlington, B. Buzzanga, C. E. Jones

CCPO Publications

Over the past century, the Hampton Roads area of the Chesapeake Bay region has experienced one of the highest rates of relative sea level rise on the Atlantic coast of the United States. This rate of relative sea level rise results from a combination of land subsidence, which has long been known to be present in the region, and rising seas associated with global warming on long timescales and exacerbated by shifts in ocean dynamics on shorter timescales. An understanding of the current-day magnitude of each component is needed to create accurate projections of future relative sea level rise upon …

Editorial—The 7th International Workshop On Modeling The Ocean (Iwmo 2015), Lie-Yauw Oey, Xiao Hua Wang, Tal Ezer, Yign Noh, Andrew Mcc. Hogg

CCPO Publications

IWMO2015 was held in the pristine campus of the Australian National University, Canberra, Australia, from June 1–5, 2015. Despite the negative Coriolis spin that many of us from the northern half of the globe experienced for the first time, we were positively impressed by the vastness and beauty of Australia and the kindness and friendliness of its people. Late fall in Canberra displayed spectacular starry nights and brisk sunny days. The workshop was attended by more than 80 participants from 16 countries around the globe. Seventy papers including both oral and posters were presented, covering a very broad range of …

Editorial-The 6th International Workshop On Modeling The Ocean (Iwmo 2014), Lie-Yauw Oey, Tal Ezer, Jinyu Sheng, Fei Chai, Jianping Gan, Kevin Lamb

CCPO Publications

The 6th International Workshop on Modeling the Ocean (IWMO 2014) was held on June 23–27, 2014, at Dalhousie University in Halifax, Nova Scotia, Canada. After three meetings in Asia (Oey et al. 2010, 2013a, b) and one in Europe (Berntsen et al. 2014), the IWMO returned to North America for the second time (since IWMO 2010 in the USA; Ezer et al. 2011). Readers are referred to https://www.dal.ca/sites/iwmo. html for more information on IWMO 2014 and http://www. ccpo.odu.edu/POMWEB /meetings.htm for information on the past meetings and future planned meetings.

Pathways And Supply Of Dissolved Iron In The Amundsen Sea (Antarctica), P. St-Laurent, P. L. Yager, R. M. Sherrell, S. E. Stammerjohn, M. S. Dinniman

CCPO Publications

Numerous coastal polynyas fringe the Antarctic continent and strongly influence the productivity of Antarctic shelf systems. Of the 46 Antarctic coastal polynyas documented in a recent study, the Amundsen Sea Polynya (ASP) stands out as having the highest net primary production per unit area. Incubation experiments suggest that this productivity is partly controlled by the availability of dissolved iron (dFe).As a first step toward understanding the iron supply of the ASP, we introduce four plausible sources of dFe and simulate their steady spatial distribution using conservative numerical tracers. The modeled distributions replicate important features from observations including dFe maxima at …

Development Of An Age-Frequency Distribution For Ocean Quahogs Arctica Islandica On Georges Bank, Sara M. Pace, Eric N. Powell, Roger Mann, M. Chase Long, John M. Klinck

CCPO Publications

Ocean quahogs [Arctica islandica (Linnaeus, 1769)] are the longest-lived, noncolonial animal known today, with a maximum life span exceeding 500 y. Ocean quahogs are a commercially important bivalve, inhabiting the continental shelf of the North Atlantic Basin. Although considerable information exists on the growth and physiology of A. islandica, limited information is available regarding recruitment; accordingly, sustainably managing the fishery is a challenge. To investigate long-term recruitment trends, the age of ocean quahogs from Georges Bank which were fully recruited to the commercial fishery (>80 mm shell length) was determined by analysis of annual growth lines in …

Investigating Coral Bleaching In A Changing Climate: Our State Of Understanding And Opportunities To Push The Field Forward, Mark E. Warner, Daniel Barshis, Sarah Davies, Andréa G. Grottoli, Todd C. Lajeunesse, Robert Van Woesik

Biological Sciences Faculty Publications

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Coral reefs throughout the world are facing the consequences of large-scale changes in Earth’s climate. In particular, ocean warming is leading to frequent coral bleaching, which is threatening the long-term stability of coral reefs. Coral bleaching is a stress response that results in the disassociation of the mutualistic symbioses (i.e., dysbiosis) between corals and their endosymbiotic algae (Symbiodinium spp.). In the past two decades, there have been four substantial bleaching events, which have affected large geographic areas across the globe, including the worst recorded bleaching event on the Great Barrier Reef in 2016 (Berkelmans et al. 2004; Eakin …

Fit To Predict? Ecoinformatics For Predicting The Catchability Of A Pelagic Fish In Near Real-Time, Kylie L. Scales, Elliot L. Hazen, Sara M. Maxwell, Heidi Dewar, Suzanne Kohin, Michael G. Jacox, Christopher A. Edwards, Dana K. Briscoe, Larry B. Crowder, Rebecca L. Lewison, Steven J. Bograd

Biological Sciences Faculty Publications

The ocean is a dynamic environment inhabited by a diverse array of highly migratory species, many of which are under direct exploitation in targeted fisheries. The timescales of variability in the marine realm coupled with the extreme mobility of ocean-wandering species such as tuna and billfish complicates fisheries management. Developing ecoinformatics solutions that allow for near real-time prediction of the distributions of highly mobile marine species is an important step towards the maturation of dynamic ocean management and ecological forecasting. Using 25 years (1990-2014) of NOAA fisheries' observer data from the California drift gillnet fishery, we model relative probability of …

Distributions Of Euphausia Superba, Euphausia Crystallorophias, And Pleuragramma Antarcticum With Correlations To Environmental Variables In The Western Ross Sea, Antarctica, Linnea Brynn Davis

OES Theses and Dissertations

Antarctic krill (Euphausia superba), crystal krill (Euphausia crystallorophias), and Antarctic silverfish (Pleuragramma antarcticum) are key mid-trophic level species in the Ross Sea food web that provide connectivity between primary production and the upper trophic levels. Distributions of these species were constructed from net-based and acoustic observations collected in the western Ross Sea from 1988-2004. Distributions of environmental conditions in the Ross Sea were obtained from a high-resolution circulation model (temperature, mixed layer depth, surface speed) and satellite-derived observations (chlorophyll, sea ice cover). These distributions were analyzed with a range of statistical methods to determine …

Potential Impacts Of Climate Change On Photochemistry Of Zostera Marina L., Billur Celebi

OES Theses and Dissertations

Seagrasses account for approximately 10% of the ocean’s total carbon storage, although photosynthesis of seagrasses is carbon limited at today’s oceanic pH. Therefore, increasing atmospheric CO₂ concentration, which results in ocean acidification/carbonation, is predicted to have a positive impact on seagrass productivity. Previous studies have confirmed the positive influence of increasing CO₂ on photosynthesis and survival of the temperate eelgrass Zostera marina L., but the acclimation of photoprotective mechanisms in this context has not been characterized. This study aimed to quantify the long-term impacts of ocean acidification on photochemical control mechanisms that promote photosynthesis while simultaneously protecting …