Oceanography Commons^™

Raw Garlic (Allium Sativum) Improves Nonspecific Immune Responses And Resistance Against Vibrio Alginolyticus Infection In Grouper (Epinephelus Coioides), Huai-Ting Huang, Po-Tsang Lee, Zhen-Hao Liao, Cheng-Ting Huang, Hsiang-Yin Chen, Zhi-Gu Huang, Fan-Hua Nan, Yu-Sheng Wu

Journal of Marine Science and Technology–Taiwan

Garlic contains various nutrients and healthful ingredients. The content of garlic products is closely related to their processing methods, and each compound has specific biological effects. Allicin, a heat labile compound, is considered the most important factor in garlic. Garlic powder is commonly prepared by subjecting raw garlic to thermal processing before being grounded into powder,and it is of interest to compare the biological activity of garlic powder with raw garlic in fish. This study investigated immune effects of raw garlic and garlic powder on groupers (Epinephelus coioides). Although raw garlic and garlic powder did not promote growth performance of …

Asymptotic Numerical Solutions For Second-Order Quasilinear Singularly Perturbed Problems, Chein-Shan Liu, Chih-Wen Chang

Journal of Marine Science and Technology–Taiwan

For a second-order quasilinear singularly perturbed problem under the Dirichlet boundary conditions, we propose a new asymptotic numerical method, which involves two problems: a reduced problem with a one-side boundary condition and a novel boundary layer correction problem with a two-sided boundary condition. Through the introduction of two new variables, both problems are transformed to a set of three first-order initial value problems with zero initial conditions. The Runge–Kutta method is then applied to integrate the differential equations and to determine two unknown terminal values of the new variables until they converge. The modified asymptotic numerical solution satisfies the Dirichlet …

Simulation Of A Ship And Tension Leg Platform Wind Turbine Collision, Jiamin Guo, Yu Zhao, Weigang Chen, Guangeng Zhou

Journal of Marine Science and Technology–Taiwan

Collisions between ships and tension leg platform wind turbines (TLPWTs) result in the TLPWT damage, including tower damage and tension leg breakage. This paper details a collision between a ship and TLPWT simulated using the LS-DYNA software package. During simulation, the behaviors of the water around the ship and of the TLPWT were processed using the constant added mass and the fluid–structure interaction methods, respectively. The results indicate that the energy conversion during collision is generally consistent with the law of conversion of energy, suggesting that the simulation’s calculations are acceptable. The TLPWT simulation results imply that two distinct collisions …

The Influences Of Promising Feedstock Variability On Advanced Biofuel Production: A Review, Cherng-Yuan Lin

Journal of Marine Science and Technology–Taiwan

The contribution of biofuels is expected to continuously increase in the global fuel market, as they are environmentally-friendly and provide renewable energy. Four generations of biofuels are categorized and are primarily based on their feedstock sources and the production technologies that are used. The influence of promising feedstock types and the availability on the production technologies and the fuel properties of advanced-generation biofuels are not systematically examined in the literature. Hence, this research extensively reviews the potential impact of feedstock sources and their variability on the production and characteristics of biofuels. The approaches of theoretical analysis and inference referred to …

Photorespiration In Eelgrass (Zostera Marina L.): A Photoprotection Mechanism For Survival In A Co₂-Limited World, Billur Celebi-Ergin, Richard C. Zimmerman, Victoria J. Hill

OES Faculty Publications

Photorespiration, commonly viewed as a loss in photosynthetic productivity of C3 plants, is expected to decline with increasing atmospheric CO₂, even though photorespiration plays an important role in the oxidative stress responses. This study aimed to quantify the role of photorespiration and alternative photoprotection mechanisms in Zostera marina L. (eelgrass), a carbon-limited marine C3 plant, in response to ocean acidification. Plants were grown in controlled outdoor aquaria at different [CO₂]aq ranging from ~55 (ambient) to ~2121 μM for 13 months and compared for differences in leaf photochemistry by simultaneous measurements of O₂ flux and …

A Subsurface Eddy Associated With A Submarine Canyon Increases Availability And Delivery Of Simulated Antarctic Krill To Penguin Foraging Regions, K. Hudson, M. J. Oliver, J. Kohut, Michael S. Dinniman, John M. Klinck, M. A. Cimino, K. S. Bernard, H. Statscewich, W. Fraser

OES Faculty Publications

The distribution of marine zooplankton depends on both ocean currents and swimming behavior. Many zooplankton perform diel vertical migration (DVM) between the surface and subsurface, which can have different current regimes. If concentration mechanisms, such as fronts or eddies, are present in the subsurface, they may impact zooplankton near-surface distributions when they migrate to near-surface waters. A subsurface, retentive eddy within Palmer Deep Canyon (PDC), a submarine canyon along the West Antarctic Peninsula (WAP), retains diurnal vertically migrating zooplankton in previous model simulations. Here, we tested the hypothesis that the presence of the PDC and its associated subsurface eddy increases …

Simulated Response Of St. Joseph Bay, Florida, Seagrass Meadows And Their Belowground Carbon To Anthropogenic And Climate Impacts, Marie Cindy Lebrasse, Blake A. Schaeffer, Richard C. Zimmerman, Victoria J. Hill, Megan M. Coffer, Peter J. Whitman, Wilson B. Salls, David D. Graybill, Christopher L. Osburn

OES Faculty Publications

Seagrass meadows are degraded globally and continue to decline in areal extent due to human pressures and climate change. This study used the bio-optical model GrassLight to explore the impact of climate change and anthropogenic stressors on seagrass extent, leaf area index (LAI) and belowground organic carbon (BGC) in St. Joseph Bay, Florida, using water quality data and remotely-sensed sea surface temperature (SST) from 2002 to 2020. Model predictions were compared with satellite-derived measurements of seagrass extent and shoot density from the Landsat images for the same period. The GrassLight-derived area of potential seagrass habitat ranged from 36.2 km2 …

Tying Policy To System: Does The Ross Sea Region Marine Reserve Protect Transport Pathways Connecting The Life History Of Antarctic Toothfish?, Julian Ashford, Michael Dinniman, Cassandra Brooks, Lian Wei, Guoping Zhu

OES Faculty Publications

A central objective of the Ross Sea region Marine Protected Area (MPA) is to protect areas important to the life cycle of Antarctic toothfish (Dissostichus mawsoni), a top fish predator and by far the region’s most important commercial species. Juvenile toothfish predominate in deep basins along the inner continental shelf, whereas adults are found mostly along the continental slope and spawning areas on the Pacific-Antarctic Ridge. The inner basins connect to the continental slope via glacial troughs and predictable transport along each trough results in exchange with the Antarctic Slope Current as it flows westward. From the slope, …

Bio-Go-Ship: The Time Is Right To Establish Global Repeat Sections Of Ocean Biology, Sophie Clayton, Harriet Alexander, Jason R. Graff, Nicole J. Poulton, Luke R. Thompson, Heather Benway, Emmanuel Boss, Adam Martiny

OES Faculty Publications

In this article, we present Bio-GO-SHIP, a new ocean observing program that will incorporate sustained and consistent global biological ocean observations into the Global Ocean Ship-based Hydrographic Investigations Program (GO-SHIP). The goal of Bio-GO-SHIP is to produce systematic and consistent biological observations during global ocean repeat hydrographic surveys, with a particular focus on the planktonic ecosystem. Ocean plankton are an essential component of the earth climate system, form the base of the oceanic food web and thereby play an important role in influencing food security and contributing to the Blue Economy. Despite its importance, ocean biology is largely under-sampled in …

Imaging Technologies Build Capacity And Accessibility In Phytoplankton Species Identification Expertise For Research And Monitoring: Lessons Learned During The Covid-19 Pandemic, Sophie Clayton, Leah Gibala-Smith, Kathryn Mogatas, Chanel Flores-Vargas, Kayla Marciniak, Maci Wigginton, Margaret R. Mulholland

OES Faculty Publications

As primary producers, phytoplankton play an integral role in global biogeochemical cycles through their production of oxygen and fixation of carbon. They also provide significant ecosystem services, by supporting secondary production and fisheries. Phytoplankton biomass and diversity have been identified by the Global Ocean Observing System (GOOS) as Essential Ocean Variables (EOVs), properties that need to be monitored to better understand and predict the ocean system. Phytoplankton identification and enumeration relies on the skills and expertise of highly trained taxonomic analysts. The training of new taxonomic analysts is intensive and requires months to years of supervised training before an analyst …

Validation Of The Use Of Clathromorphum Compactum Growth And Skeletal Δ18o As A Proxy For Seawater Conditions, Teagan Mcmahon

Pitzer Senior Theses

Crustose coralline algae (CCA) are important organisms that create benthic habitat in the photic zone of oceans worldwide. CCAs mechanisms of photosynthesis and calcification may, in some cases, make them vulnerable to climate change and ocean acidification. Therefore, CCA are important not only for their ecological role within ecosystems but also for their ability to indicate the effects that ocean acidification and climate change may have on other marine calcifying organisms. Some species of CCA are known to be useful recorders of paleo oceanic conditions. These climate archives and reconstructions of past environmental conditions are important for understanding past changes …

The Atlantic Surfclam Fishery And Offshore Wind Energy Development: 2. Assessing Economic Impacts, Andrew M. Scheld, Jennifer Beckensteiner, Daphne M. Munroe, Eric N. Powell, Sarah Borsetti, Eileen E. Hofmann, John M. Klinck

CCPO Publications

The Atlantic surfclam (Spisula solidissima) fishery generates approximately USD 30 million in landings revenues annually, distributed across ports throughout the US Mid-Atlantic and Northeast. Overlap between areas of Atlantic surfclam harvests and offshore wind energy leasing make the fishery vulnerable to exclusion and effort displacement as development expands in the region. An existing integrated bioeconomic agent-based model, including spatial dynamics in Atlantic surfclam stock biology, heterogeneous captain behaviour, and federal management processes, was extended to incorporate costs and revenues for fishing vessels and processors and used to evaluate the potential economic effects of offshore wind development on the …

Phytoplankton Community Response To Upwelling Events: Distribution And Abundance Investigated Using Genomic Methods, Sveinn V. Einarsson

OES Theses and Dissertations

Upwelling events are known to support blooms of phytoplankton, important primary producers at the base of the oceanic food web. Phytoplankton community structure changes in response to upwelling support higher trophic level growth and increased efficiency of carbon export from the euphotic zone. While these events occur globally, this study examined upwelling in coastal regions, where alongshore winds can drive Ekman transport and upwelling of deeper waters. The two upwelling regimes examined were the California Current System and the Alaskan Beaufort Sea. In the California Current System, the relative diatom community composition was examined using 18S sequencing to determine how …

Dioxins Contamination In Sediment And Their Effect On Accumulation In The Portuguese Oyster (Crassostrea Angulata) And White Shrimp (Litopenaeus Vannamei), Yin-Yu Chen, Yu-Sheng Wu, Hsiang-Yin Chen, Zhen-Hao Liau, Fan-Hua Nan

Journal of Marine Science and Technology–Taiwan

This research aims to realize whether the dioxin accumulation in the oyster and white shrimp which were cultured in the dioxin pollutant sediment. This presented evidence indicated that dioxin was detected in all experimental groups with high concentration accumulated in experiment animals. Observation of the concentration, the PCDD/F, 2,3,7,8-T4CDD was with high concentration in the sediment and declined with the time elapsed. Detection of the dioxin accumulated in the animal, the accumulative maximum amounts was in the oyster as 3746.16 (pg-TEQ/g d.w.) and in the shrimp as 705.44 (pg-TEQ/g d.w.). The detected amount of dioxin in the supernatant was quite …

A Meshless Method With Radial Basis Function For Solving Unsaturated Flow In Heterogeneous Porous Media, Cheng-Yu Ku, Chih-Yu Liu, Wei-Po Huang, Jing-En Xiao

Journal of Marine Science and Technology–Taiwan

This paper presents a study for solving unsaturated flow in heterogeneous porous media using the meshless method with the radial basis function (RBF). For modeling the nonlinear hydrological process in unsaturated zone, an exponential model is introduced in the Richards equation such that we may obtain the linearized Richards equation. We adopt the multiquadric function as the RBF in the meshless method for solving the linearized Richards equation. For simulating the unsaturated flow problems in layered heterogeneous soils, the flux and the head must satisfy the continuity condition at the interface. Several examples are carried out for modeling the hydrological …

Catch Rates And Distribution Pattern Of The Silky Shark, Carcharhinus Falciformis, Caught By The Taiwanese Large-Scale Longline Fishery In The Indian Ocean, Chia Yun Li, Xing-Han Wu, Shang Yin Vanson Liu, Sheng-Ping Wang, Wen-Pei Tsai

Journal of Marine Science and Technology–Taiwan

The silky shark, Carcharhinus falciformis, is widely distributed in tropical and temperate waters, and it is a common bycatch species for tuna longline fisheries. This study examined the distribution of and presents relative abundance indices of the silky shark in the Indian Ocean by using logbook and observer data from the Taiwanese large-scale tuna longline fishery between 2005 and 2019. Due to the high zero catch rate, a zero-inflated negative binomial (ZINB) model was used to standardize catch per unit effort. Due to a lack of detailed targeting information, the fishery strategy was identified by using cluster analysis based on …

Accumulation And Bioavailability Of Heavy Metals (Cadmium, Chromium, Nickel, Lead And Zinc) In Water And Sediment Samples In The Musa Creek, Northwest Coasts Of The Persian Gulf, Saghafiankhoo Sedigheh, Battaleb-Looie Sedigheh, Amanipoor Hakimeh, Dravishi Khatooni Javad, Ghanemi Kamal

Journal of Marine Science and Technology–Taiwan

The current study aimed to investigate the total concentrations of heavy metals in water and sediment samples as well as their bioavailability in sediments of Musa Creek. Twenty samples including 10 sediments and 10 water samples were collected from 10 stations. The concentration of heavy metals was measured using inductively coupled plasma–mass spectrometry. The bioavailability of heavy metals was carried out by first step of Tessier sequential extraction method so called single extraction in the manuscript. The results showed that the mean concentrations of cadmium, chromium, nickel, and zinc in water samples was 0.17, 7.44, 43.80, and 8.85 µg/L, respectively. …

Parametric Analyses Of The Dynamic Response And Fatigue Life Of A Compliant Vertical Access Riser With Internal Flow, Fuheng Li, Haiyan Guo, Xiaomin Li, Zhen Liu, Honglu Gu, Peng Cui

Journal of Marine Science and Technology–Taiwan

Subsea interventions on wellheads can be directly performed from a platform using a compliant vertical access riser (CVAR), thereby incurring tremendous economic benefits. The dynamic response and the fatigue damage of a CVAR subjected to regular waves are important for assessing its application feasibility. Therefore, a reasonable numerical model is presented for assessing the damage to a CVAR considering the internal flow using the slender rod theory. The finite element method combined with a Newmark-β scheme is employed to discretize the equations and update the time integration. The Palmgren-Miner rule is applied for fatigue life prediction, focusing on the wave-induced …

Using The Inverse Method To Investigate Flow Models For Mixed Convection Of Annular Finned Tube Heat Exchanger, Han-Taw Chen, Cheng-Hui You, Wei-Lun Hsu, Jiang-Ren Chang

Journal of Marine Science and Technology–Taiwan

The inverse heat conduction method (IHCM) and three-dimensional (3D) computational fluid dynamic (CFD) in combination with are used to select the appropriate flow model and near-wall treatment for the mixed convection of the annular finned tube heat exchanger. Thus, the numerical results obtained by all k-ε models and near-wall treatments are yielded for 4 m/s ≤ Va ≤ 5 m/s. First, IHCM combined with is applied to estimate and Q values. The obtained estimates of and Q are used as reference values for CFD. The results show that the Tk and results obtained by the standard (STD) k-ε model with …

Prediction Of Remaining Useful Life Of Wind Turbine Shaft Bearings Using Machine Learning, Jinsiang Shaw, Bingjie Wu

Journal of Marine Science and Technology–Taiwan

Wind turbines are a major trend in the current green energy market. Wind energy is abundant, and if utilized properly, can result in significant reductions in carbon emissions. Therefore, the development of wind power systems is urgently required. However, wind turbines are mainly built in unmanned areas. Regular inspections require substantial manpower and material resources, and doubts regarding the accuracy of the inspected data may occur. Therefore, it is necessary to establish an automatic diagnostic method for determining the remaining useful life (RUL) of a wind turbine to facilitate predictive maintenance. In this study, a multi-class support vector machine (SVM) …

Supply Chain Management For Superyacht Construction In Taiwan, Chun Pong Wong

Journal of Marine Science and Technology–Taiwan

In the last 20 years, Taiwan’s superyacht construction industry has performed well in the global market; however, numerous yacht builders still practice traditional supply chain management (SCM), which is often inefficient and regularly leads to time and cost overruns. This study aimed to answer two research questions: 1) what SCM challenges does the superyacht construction industry face? and 2) what SCM strategies and practices should be adopted to improve the efficacy and profitability of superyacht construction companies?

Numerous studies have explored supply chains (SCs) and SCM, but few have focused on the superyacht construction industry. Superyacht construction projects are highly …

The Impact Of Variable Curing Conditions On The Properties And Microstructures Of Mixtures Of Ground Granulated Blast Furnace Slag And Circulating Q1 Fluidized Bed Combustion Ash, Shao-Heng Hsieh, Wei-Chung Yeih, Ran Huang

Journal of Marine Science and Technology–Taiwan

The use of Portland cement, an important construction material, is encountering growing challenges because of its adverse environmental impacts. In this study, a new hydration system without Portland cement, which blends ground granulated blast furnace slag (GGBFS) and circulating fluidized bed combustion (CFBC) ash, was developed and tested. The variables included the effect of different types of CFBC ash, the mass ratios between CFBC ash and GGBFS, and different curing temperatures. The mortar properties were determined through the compressive strength test, absorption test, shrinkage test, X-ray diffraction, scanning electron microscopy, and energy-dispersive X-ray spectroscopy. The main results were as follows: …

A Marine Gis-Based Alert System To Prevent Vessels Collision With Offshore Platforms, Sheng-Long Kao, Ki-Yin Chang, Tai-Wen Hsu

Journal of Marine Science and Technology–Taiwan

How to effectively use an intelligent aid-to-navigation (AtoN) to prevent ships from accidentally colliding with offshore marine platforms (OMPs) is an important issue for maritime environment. This study proposes a novel collision alert system with three components to process Automatic Identification System (AIS) data in the cloud and broadcast AtoNs to ships in order to avoid collision with OMPs. The first component receives as input fuzzy linguistic variables (vessel size, relative speed, and approach distance) from the AIS data and calculates the radius of the guarding ring. The second component serves a Marine GIS (MGIS), where the system simulates the …

Nutrient Cycling In Tropical And Temperate Coastal Waters: Is Latitude Making A Difference?, Christian Lønborg, Moritz Müller, Edward C. V. Butler, Shan Jiang, Seng Keat Ooi, Dieu Huong Trinh, Pui Yee Wong, Suryati M. Ali, Chun Cui, Wee Boon Siong, Erik S. Yando, Daniel A. Friess, Judith A. Rosentreter, Bradley D. Eyre, Patrick Martin

Biological Sciences Faculty Publications

Tropical coastal waters are highly dynamic and amongst the most biogeochemically active zones in the ocean. This review compares nitrogen (N) and phosphorus (P) cycles in temperate and tropical coastal waters. We review the literature to identify major similarities and differences between these two regions, specifically with regards to the impact of environmental factors (temperature, sunlight), riverine inputs, groundwater, lateral fluxes, atmospheric deposition, nitrogen fixation, organic nutrient cycling, primary production, respiration, sedimentary burial, denitrification and anammox. Overall, there are some similarities but also key differences in nutrient cycling, with differences relating mainly to temperature, sunlight, and precipitation amounts and patterns. …

The Influence Of Bottom Type And Water Column Stratification On Reef Fish Community Structure At Gray’S Reef National Marine Sanctuary, Bridget Campbell

Honors Theses

Understanding the physical and oceanographic differences across reef habitats can help researchers assess how those differences influence fish distribution and community structure, which leads to a better understanding of what a healthy reef system looks like. The traditional methods used to assess fish communities on temperate reefs are limited and often focus solely on either the reef structure or water column conditions alone. An assessment of both data sets yields a more complete understanding of the ecosystem as a whole. In this study, Gray’s Reef National Marine Sanctuary (GRNMS) was surveyed both inside and outside a Marine Protected Area (MPA) …

Effectiveness Against White Sharks Of The Rpela Personal Shark Deterrent Device Designed For Surfers, Craig Blount, Dan Pygas, Marcus P. Lincoln Smith, Daryl P. Mcphee, Colby Bignell, Ocean Ramsey

Journal of Marine Science and Technology–Taiwan

Many shark bites to humans, including fatalities, have involved surfers. Various personal shark deterrents are commercially available to surfers, including Rpela v2, which is a battery-powered device fitted to a surfboard. It produces an electric field around the surfer aimed at deterring sharks from approaching or biting by disrupting their electro-reception organs. The device was tested on white sharks (Carcharodon carcharias) at Salisbury Island, Western Australia. In total, 46 trials were done with the Rpela v2 either active or not active to determine the device’s effect on sharks’ response to a floating board with fish bait attached (to tempt a …

Inter-Annual Changes Of Water Temperature In The Southern South China Sea's Continental Shelf: The Influence Of Enso On Malaysian Waters, Afifi Johari, Mohd Fadzil Akhir, Muhammad Naim Satar, Zuraini Zainol, Guo Jingsong

Journal of Marine Science and Technology–Taiwan

An extensive amount of data from the World Ocean Database (WOD) that covers the southern South China Sea (SSCS) were analysed to study the long-term trends and variations of the El-Nino Southern Oscillation (ENSO) event. The WOD data were selected from 1951 to 2010, which included the area within 0–10 °N and 100–117 °E. El-Nino and La-Nina anomaly results showed that the sea surface temperature anomalies (SSTa) trend of SSCS was higher during offset-El-Nino years and lower during offset-La-Nina years. Besides, the inter-annual vertical water temperature profile revealed that the deepening of the warmer water temperature occurred in February and …

The Eumedonine Genera Eumedonus H. Milne Edwards, 1834, And Gonatonotus White, 1847 (Crustacea: Brachyura: Pilumnidae) In Taiwan, Peter K. L Ng, Chia-Wei Lin

Journal of Marine Science and Technology–Taiwan

Two species of eumedonine crabs, Eumedonus zebra Alcock, 1895, and Gonatonotus nasutus Chia & Ng, 2000, are recorded from Taiwan, the former for the first time. Both are also new genera records for the island. Notes on variation are noted and their taxonomy briefly treated. The number of eumedonine species, all of which are obligate symbionts on echinoderms, known from the island is now seven genera and seven species.

An Analysis Of Consumer Evaluations Of The “Tagonoura Shirasu” Certification Under The Japan Geographical Indication Protection System, Yu-Heng Lu, Takahiro Sajiki

Journal of Marine Science and Technology–Taiwan

Over time, the Geographical Indication (GI) protection system has been independently adopted in more than 100 countries worldwide. In Japan, the GI protection system has been operating since 2015 in response to a growing interest in local brands. Therefore, based on a questionnaire survey, we econometrically analyze the consumer evaluation of Shizuoka Prefecture’s Shirasu “Tagonoura Shirasu,” which is registered under the GI protection system. Shirasu is a collective term for long and narrow larvae such as anchovy (Engraulis japonicus), sardine (Sardinops melanostictus), or red-eye round herring (Etrumeus sadina). Based on the contingent valuation method, we clarified that consumers' additional willingness …

A Two-Stage Approach To Integrate Vessel Geo-Tracking Data And Logbooks For Monitoring Fishing Activity Of Coastal Fisheries In Waters Off Northwestern Taiwan, Yi-Jou Lee, Nan-Jay Su, Cheng-Hsin Liao, Wei-Chuan Chiang, Chun-Huei Li

Journal of Marine Science and Technology–Taiwan

Catch and fishing effort data are fundamental information to stock assessment and fisheries management, but difficult to obtain without the support of administration and sound fishery data collection system. This study integrated various sources of data from a simplified vessel geo-tracking system and logbooks from interviews with captains of coastal gillnet fisheries. We developed a two-step approach based on hierarchical cluster analysis to characterize the operation patterns and infer the fishing activities of the fishery. Results showed that the fishing effort in terms of operation duration could be estimated precisely for various vessel sizes, with catch composition and harvest information …