Oceanography Commons^™

The Rise And Fall Of Crassostrea Virginica Oyster Reefs: The Role Of Disease And Fishing In Their Demise And A Vignette On Their Management, Eric N. Powell, John M. Klinck, Kathryn Ashton-Alcox, Eileen E. Hofmann, Jason Morson

CCPO Publications

We describe a model designed to simulate the shell carbonate budget of an oyster reef.We identify five parameters descriptive of basic characteristics of the shell carbonate budget of a reef that limit simulation accuracy. Two describe the TAZ (taphonomically-active zone) and the distribution of shell carbonate within it. One is the taphonomic rate in the TAZ. Two determine the volume contribution of shell carbonate and the taphonomic loss rate within the reef framework. For Mid-Atlantic estuaries, model simulations suggest that reef accretion only occurs if oyster abundance is near carrying capacity. Simulations further suggest that reef accretion is infeasible for …

Does Large-Scale Ocean Circulation Structure Life History Connectivity In Antarctic Toothfish (Dissostichus Mawsoni)?, Julian Ashford, Michael S. Dinniman, Cassandra Brooks, Allen H. Andrews, Eileen E. Hofmann, Gregor Cailliet, Christopher Jones, Nakul Ramanna

CCPO Publications

A multidisciplinary approach incorporating otolith chemistry, age data, and numerical Lagrangian particle simulations indicated a single, self-recruiting population of Antarctic toothfish (Dissostichus mawsoni) in the Southeast Pacific Basin (SPB) and Ross Sea, with a life history structured by the large-scale circulation. Chemistry deposited prior to capture along otolith edges demonstrated strong environmental heterogeneity, yet the chemistry in otolith nuclei, deposited during early life, showed no differences. Age data showed only adult fish in catches on the Pacific-Antarctic Ridge in the SPB and structuring of life stages consistent with transport pathways from the northern Ross Sea. Lagrangian particle simulations …

Environmental Influences On Juvenile Fish Abundances In A River-Dominated Coastal System, Laure Carassou, Brian Dzwonkowski, Frank J. Hernandez, Jr., Sean P. Powers, William M. Graham, Kyeong Park, John Mareska

University Faculty and Staff Publications

We investigated the influence of climatic and environmental factors on variations in juvenile abundances of marine fishes in a river-dominated coastal system of the north-central Gulf of Mexico, where an elevated primary productivity sustains fisheries of high economic importance. Fish were collected monthly with an otter trawl at three stations near Mobile Bay from 1982 to 2007. Fish sizes were used to isolate juvenile stages within the data set, and monthly patterns in juvenile fish abundance and size were then used to identify seasonal peaks for each species. The average numbers of juvenile fish collected during these seasonal peaks in …

Rumbling In The Benthos: Acoustic Ecology Of The California Mantis Shrimp Hemisquilla Californiensis, E. Staaterman, C. Clark, A. Gallagher, M. Devries, T. Claverie, S. Patek

Faculty Publications, Biological Sciences

Although much research has focused on acoustic mapping and exploration of the benthic environment, little is known about the acoustic ecology of benthic organisms, particularly benthic crustaceans. Through the use of a coupled audio–video system, a hydrophone array, and an autonomous recording unit, we tested several hypotheses about the field acoustics of a benthic marine crustacean, Hemisquilla califor­niensis. Living in muddy burrows in southern California, these large mantis shrimp produce low frequency ‘rumbles’ through muscle vibrations. First, we tested whether acoustic signals are similar in the field and in the laboratory, and discovered that field-produced rumbles are more acoustically and …

Population Dynamics Of Sheepshead (Archosargus Probatocephalus; Walbaum 1792) In The Chesapeake Bay Region: A Comparison To Other Areas And An Assessment Of Their Current Status, Joseph Charles Ballenger

OES Theses and Dissertations

Sheepshead recently have seen an increase in fishing pressure in Virginian waters of the Chesapeake Bay. This increase in fishing pressure has led to demands to install effective management measures to protect the fishery. However, no study regarding the population dynamics, and thus potential yield, of sheepshead has been conducted north of Cape Hatteras. We addressed the need for information regarding the population dynamics of Chesapeake Bay sheepshead by investigating their age distribution, growth rate and reproductive biology. We used this information to construct yield-per-recruit models, which local management agencies may use in the formation of scientifically based management measures. …

Evaluating Methods For Optimizing Classification Success From Otolith Tracers For Spotted Seatrout (Cynoscion Nebulosus) In The Chesapeake Bay, Stacy Kavita Beharry

OES Theses and Dissertations

Identifying the natal sources of fish is an important step in understanding its population dynamics. Adult recruits are often sourced from multiple nursery areas, with good quality locations contributing disproportionately more fish to the adult stock. Because population persistence is strongly influenced by nursery habitat, methods that correctly identify the source of recruits are necessary for effective management. Within the last decade, otolith chemistry signatures have been increasingly used as a natural marker to delineate fish from a mixture of nursery sources. Despite the widespread use of otolith trace element and stable isotope ratios as habitat markers, the statistical approaches …

Use Of Sarima Models To Assess Data-Poor Fisheries: A Case Study With A Sciaenid Fishery Off Portugal, Nuno Prista, Norou Diawara, Maria J. Costa, Cynthia M. Jones

OES Faculty Publications

Research on assessment and monitoring methods has primarily focused on fisheries with long multivariate data sets. Less research exists on methods applicable to data-poor fisheries with univariate data sets with a small sample size. In this study, we examine the capabilities of seasonal autoregressive integrated moving average (SARIMA) models to fit, forecast, and monitor the landings of such data-poor fisheries. We use a European fishery on meagre (Sciaenidae: Argyrosomus regius), where only a short time series of landings was available to model (n=60 months), as our case-study. We show that despite the limited sample size, a SARIMA model could …

Marine Bioinvasions And Climate Change, James T. Carlton, Sandra C. Lindstrom, Celia M. Smith, Jennifer E. Smith

National Invasive Species Council

BACKGROUND

Invasive species are second only to habitat destruction as the greatest cause of species endangerment and global biodiversity loss. Invasive species can cause severe and permanent damage to the ecosystems they invade. Consequences of invasion include competition with or predation upon native species, hybridization, carrying or supporting harmful pathogens and parasites that may affect wildlife and human health, disturbing ecosystem function through alteration of food webs and nutrient recycling rates, acting as ecosystem engineers and altering habitat structure, and degradation of the aesthetic quality of our natural resources. In many cases we may not fully know the native animals …

Spatial And Temporal Variation In Otolith Chemistry For Tautog (Tautoga Onitis) In Narragansett Bay And Rhode Island Coastal Ponds, Ivan Mateo, Edward G. Durbin, David A. Bengtson, Richard Kingsley, Peter K. Swart, Daisy Durant

Fisheries, Animal and Veterinary Sciences Faculty Publications

The elemental composition of otoliths may provide valuable information for establishing connectivity between fish nursery grounds and adult fish populations. Concentrations of Rb, Mg, Ca, Mn, Sr, Na, K, Sr, Pb, and Ba were determined by using solution-based inductively coupled plasma mass spectrometry in otoliths of young-of-the year tautog (Tautoga onitis) captured in nursery areas along the Rhode Island coast during two consecutive years. Stable oxygen (δ¹⁸O) and carbon (δ¹³C) isotopic ratios in young-of-the year otoliths were also analyzed with isotope ratio mass spectrometry. Chemical signatures differed significantly among the distinct nurseries within Narragansett …

Fisheries Research Report No. 197 - Coastal And Marine Resource Condition Monitoring - Scoping Project, Brett A. Human, Justin I. Mcdonald

Fisheries Research Reports

Final NRM Report – Project 073007

Part 1– Knowledge review and gap analysis: Resource condition monitoring in the Pilbara and Kimberley regions of Western Australia

This report details extensive literature searches for both research and monitoring programs that have been undertaken in the marine and coastal environments of the Pilbara and Kimberley region of northern Western Australia. The Pilbara and Kimberley region is remote and difficult to access, resulting in very little monitoring effort of the marine and coastal environments in that region.

We currently know very little of the condition of marine and coastal natural resources in the Pilbara …

Peptide Hydrolysis And The Uptake Of Dipeptides By Phytoplankton, Margaret R. Mulholland, Cindy Lee

OES Faculty Publications

Rates of peptide hydrolysis (using the fluorescent substrate, lucifer yellow anhydride-labeled tetra-alanine) and dipeptide uptake (using dually labeled, ¹⁵N and ¹³C, dialanine) were measured in phytoplankton cultures and in natural populations during algal blooms dominated by one or two taxa. During most sampling events, both peptide hydrolysis and dipeptide uptake were greatest in the size fraction containing the dominant phytoplankter, suggesting that phytoplankton contribute substantially to or may even dominate observed extracellular peptide hydrolysis and dipeptide uptake in the environment. These are the first data suggesting that dipeptides may be taken up directly by phytoplankton and this may …

Spatial Variation In Otolith Chemistry Of Atlantic Croaker Larvae In The Mid-Atlantic Bight, Jason J. Schaffler, Christian S. Reiss, Cynthia M. Jones

OES Faculty Publications

Larval Atlantic croaker Micropogonias undulatus (1 to 7 mm in standard length) were collected on the east coast of the United States from North Carolina to Delaware during 2000. We defined 3 water-mass boundaries for potential groups of spawning Atlantic croaker using temperature and salinity measured at each sampling station. We tested the hypothesis that distinct otolith chemistries existed among 3 groups of larval Atlantic croaker collected from these water masses using solution-based inductively coupled plasma-mass spectrometry. Multivariate analysis of variance indicated that otolith chemistry differed significantly among water masses. Using a quadratic discriminant function, we were able to correctly …

Patterns Of Larval Atlantic Croaker Ingress Into Chesapeake Bay, Usa, Jason J. Schaffler, Christian S. Reiss, Cynthia M. Jones

OES Faculty Publications

We compared ingress patterns of Atlantic croaker Micropogonias undulatus larvae into Chesapeake Bay, USA, with published ingress patterns through barrier island inlets, the accepted model for larval fish ingress. This model asserts that larvae ingress on night flood tides at the flooddominated side of the inlet and at all depths. At the Chesapeake Bay mouth and in the adjacent coastal waters, we compared the distribution of abundance, size, age, and growth rates of croaker prior to ingress, In contrast to the barrier island inlet model, croaker larvae were more abundant at depth than closer to the surface regardless of location. …

Is Seagrass An Important Nursery Habitat For The Caribbean Spiny Lobster, Panulirus Argus, In Florida?, Donald C. Behringer, Mark J. Butler Iv, William Herrnkind, John H. Hunt, Charles A. Acosta, William C. Sharp

Biological Sciences Faculty Publications

Caribbean spiny lobster (Panulirus argus) settle preferentially in macroalgal-covered hard-bottom habitat, but seagrass is more prevalent in Florida (United States) and the Caribbean, so even low settlement of lobsters within seagrass could contribute substantially to recruitment if post-settlement survival and growth were high. We tested the role of seagrass and hard-bottom habitats for P. argus recruitment in three ways. We first explored possible density-dependent regulation of early benthic juvenile lobster survival within cages deployed in seagrass and hard-bottom habitats. Second, we compared settlement and survival of P. argus in both habitats, by comparing the recovery of microwire-tagged early …

Regional Characterisation Of Hard-Bottom Nursery Habitat For Juvenile Caribbean Spiny Lobster (Panulirus Argus) Using Rapid Assessment Techniques, Rodney D. Bertelsen, Mark J. Butler Iv, William F. Herrnkind, John H. Hunt

Biological Sciences Faculty Publications

Shallow, hard-bottom habitat constitutes approximately 30% of the coastal waters of south Florida, United States, yet it is a chronically understudied feature of the marine seascape in this region. In this study, we characterised the general biogeographic and structural features of shallow benthic hard-bottom communities in the Florida Keys, and related those to the abundance of juvenile Caribbean spiny lobster (Panulirus argus), the target of one of Florida's most economically valuable fisheries. We used rapid assessment techniques to survey more than 100 hard-bottom sites in the Florida Keys to estimate the percentage bottom coverage of vegetation (seagrass and …

Patterns Of Spiny Lobster (Panulirus Argus) Postlarval Recruitment In The Carribbean: A Crtr Project, Mark J. Butler Iv, Angela M. Mojica, Eloy Sosa-Cordero, Marines Millet, Paul Sanchez-Navarro, Miguel A. Maldonado, Juan Posada, Bladimir Rodriguez, Carlos M. Rivas, Adrian Oviedo, Marcio Arrone, Martha Prada, Nick Bach, Nilda Jimenez, Maria Del Carmen Garcia-Rivas, Kirah Forman, Donald C. Behringer Jr., Thomas Matthews, Claire Paris, Robert Cowen

Biological Sciences Faculty Publications

As part of the Coral Reef Targeted Research (CRTR) Program, a partnership between the Global Environment Facility and the World Bank, our research team examined the recruitment patterns of Caribbean spiny lobster (Panulirus argus) postlarvae among regions in the Caribbean, with a particular focus on Mesoamerica. Our goal was to collect comparable information on postlarval supply among regions and to provide data to test predictions of connectivity generated from a coupled biophysical oceanographic model of lobster larval dispersal. Here we present the results of the postlarval recruitment monitoring program. We monitored the catch of postlarvae on Witham-style collectors …

Time Post-Hatch Caloric Value Of Artemia Salina, Jessie M. Sanders

Senior Honors Projects

In aquatic animal collections, such as those in the collection of Mystic Aquarium & Institute for Exploration’s Fish & Invertebrate department, live food is an essential part of the diet of animals that are on display, used in education, and kept in reserve for exhibits. For Mystic Aquarium’s Fish & Invertebrate department, newly hatched Artemia salina, or brine shrimp, are fed to an assortment of fishes and invertebrates, including soft corals and jellyfish. Hatch brine is an important source of fatty acids, which are essential for proper growth and development. Hatch brine starts encapsulated in a cyst form and are …

The Use Of Extractable Lipofuscin For Age Determination Of Crustaceans: Reply To Sheehy (2008), H. Rodger Harvey, David H. Secor, Se-Jong Ju

OES Faculty Publications

The heterogeneous mixture of metabolic by-products termed lipofuscin (LF) or age pigments has long been known to accumulate in post mitotic cells with increasing age. In crustaceans several approaches have been developed over the years to track LF accumulation and provide a proxy for chronological age. Histological approaches have been traditionally used for LF determination of crustaceans (e.g. Sheehy et al. 1994, Mar Biol 121:237-245), but over the last decade extraction approaches for neural tissues have been introduced (Ju et al. 1999, Mar Ecol Prog Ser 185:171-179) and tested (Ju et al. 2001, Mar Ecol Prog Ser 224:197-205; 2003, Fish …

Otolith Chemistry Indicates Population Structuring By The Antarctic Circumpolar Current, Julian R. Ashford, Cynthia M. Jones, Eileen E. Hofmann, Inigo Everson, Carlos A. Moreno, Guy Duhamel, Richard Williams

CCPO Publications

Large-scale transport of seawater in ocean currents may generate spatially complex population structure through the advection of life stages of marine fish species. To test this, we compared the chemistry of otolith nuclei from Patagonian toothfish (Dissostichus eleginoides), presently managed as spatially discrete Populations corresponding to fishing management areas along the Antarctic Circumpolar Current (ACC), which transports water eastward around the Southern Ocean. The chemistry of otolith nuclei, laid down during early life, differed significantly between fishing areas Off South America and the Antarctic and between some Antarctic areas. However, we found significant discrepancies from expectation for a …

Limb Regeneration After Multiple Autotomy And Coxae Removal In The Blue Crab Callinectes Sapidus, Jennifer Ambler

OES Theses and Dissertations

This study investigated limb regeneration in the juvenile blue crab, Callinectes sapidus, specifically the role of the coxa and pedal nerve innervation of the regenerative limb bud over time. The coxa is a leg segment that has been defined as the source of positional, cellular, and neuronal information needed for limb regeneration in brachyuran crabs. This study indicates that removal of coxae under regenerative and non-regenerative conditions did not deter limb regeneration. The coxa is not the exclusive location of limb regenerative information since limbs re-grew with normal positional and functional arrangement in 86% of crabs showing regeneration at removal …

Mechanics Of Suction Generation During Feeding In Little Skates, Danielle Duquette

Senior Honors Projects

Feeding mechanisms of aquatic vertebrates has been extensively studied in the past, while that of elasmobranchs remains limited. Skates and rays are believed to have evolved from a shark ancestor, thus they represent the most derived group. All skates are dorsoventrally compressed, have a unique jaw suspension type and head skeleton and live in benthic environments. It is unknown whether these derived features of skates have altered the ancestral shark feeding mechanism. Comparing feeding mechanisms in skates and sharks may shed light on morphological transformations that have arisen after the evolutionary split of these two groups. In this study prey …

Otolith Chemistry Reflects Frontal Systems In The Antarctic Circumpolar Current, J. R. Ashford, A. I. Arkhipkin, C. M. Jones

OES Faculty Publications

Pronounced environmental trends across fronts suggest that the otolith chemistry of oceanic fish can resolve zones on either side, promoting application to population questions at similar spatial scales. Trace and minor elements laid down immediately prior to capture - along the edges of otoliths from Patagonian toothfish Dissostichus eleginoides - discriminated frontal zones in the Antarctic Circumpolar Current in the Southwestern Atlantic Ocean. Mean values differentiated sampling areas by up to 2.6 standard deviations, suggesting: (1) otolith Mg/Ca enrichment related to fish activity around the Burdwood Bank; (2) Mn/Ca enrichment associated with South America; (3) Sr/Ca linked to the presence …

Substituting Otoliths For Chemical Analyses: Does Sagitta = Lapillus?, Nathan G. Smith, Cynthia M. Jones

OES Faculty Publications

Chemical analysis of fish otoliths has become an important technique in fisheries science with widespread applications. Most research up to this point has focused predominantly on sagittal otoliths, but the underlying assumptions may also apply to lapilli. The goal of this study was to determine whether lapilli and sagittae have the same otolith chemistry and whether one can be substituted for the other for solution-based chemical analysis in wild-captured fish. We compared the stable isotope chemistry (δ13C and δ18O) of paired sagittae and lapilli of juvenile spotted seatrout Cynoscion nebulosus collected from Chesapeake Bay seagrass beds in 2002. …

Sea Urchin Predation In Misali Island Marine Park, Nicole Esclamado

Independent Study Project (ISP) Collection

The populations of sea urchins and their main predators, triggerfish (Balistidae), wrasses (Labridae) and emperors (Lethrinidae), were studied in the extractive and non-extractive zones of the Misali Island Marine Conservation Area in order to (1) evaluate the applicability of a sea urchin-sea urchin predator model developed in Kenya’s fringing reefs, (2) gain baseline data on Misali’s coral reef, and (3) evaluate the recovery status of the protected zone. This study revealed the predictive power of the sea urchin-sea urchin predator model for the reef ecosystem of Misali Island. As expected, a decline in sea urchin predators as a gross trophic …

Distribution Of Foraging Shearwaters Relative To Inner Front Of Se Bering Sea, J. Jahncke, K. O. Coyle, Stephan I. Zeeman, N. B. Kachel, G. L. Hunt Jr.

Marine Sciences Faculty Publications

We examined the hypothesis that short-tailed shearwaters Puffinus tenuirostris aggregate to forage at the inner front of the SE Bering Sea because of enhanced production there. We tested this hypothesis by comparing primary production, the distribution of euphausiids and the distribution of shearwaters relative to the front during late spring and late summer/early fall of 1997, 1998 and 1999. We found enhanced primary production at the front and offshore of the front during summer but not during spring. Primary production varied between seasons and years. Major differences were related to anomalous conditions in 1997 and 1998. The density of euphausiids …

Chemistry Of Surface Waters: Distinguishing Fine-Scale Differences In Sea Grass Habitats Of Chesapeake Bay, Emmanis Dorval, Cynthia M. Jones

OES Faculty Publications

We tested the hypothesis that the physical and chemical processes acting in sea grass habitats of the lower Chesapeake Bay are spatially structured and that dissolved elemental chemistry of sea grass-habitat surface waters have their own unique identity. We sampled surface waters from July to September 2001 in five sea grass habitats of the lower bay: Potomac, Rappahannock, York, Island (Tangier-Bloodsworth), and Eastern Shore. Dissolved Mg, Mn, Sr, and Ba concentrations were measured by sector field inductively coupled plasma-mass spectrometry. As expected, Mg, Sr, and Ba exhibited conservative behavior, but Mn exhibited nonconservative behavior along the salinity gradient. Spatial differences …

Biophysical Mechanisms Of Larval Fish Ingress Into Chesapeake Bay, Jonathan A. Hare, Simon Thorrold, Harvey Walsh, Christian Reiss, Arnoldo Valle-Levinson, Cynthia Jones

OES Faculty Publications

Selective tidal stream transport is hypothesized as a dominant mechanism by which larvae of marine animals move through estuarine openings. For larvae moving from the shelf to estuarine habitats, selective tidal stream transport proposes that larvae are higher in the water column during flood tide and lower in the water column during ebb tide. Although a number of studies conclude that selective tidal stream transport is the mechanism responsible for larval ingress, few studies consider alternative mechanisms or consider passive explanations for tidal patterns in larval distributions. We examined the biophysical mechanisms responsible for larval ingress into Chesapeake Bay using …

Can Otolith Elemental Signatures Record The Capture Site Of Patagonian Toothfish (Dissostichus Eleginoides), A Fully Marine Fish In The Southern Ocean?, J. R. Ashford, C. M. Jones, E. Hofmann, I. Everson, C. Moreno, G. Duhamel, R. Williams

CCPO Publications

Otolith chemistry has been successfully used to reconstruct the environmental history experienced by estuarine-dependent teleost fish, including movement between estuaries and coastal areas. However, application has been more limited in species exposed exclusively to oceanic waters, where gradients in physical and chemical properties are less extreme. To test whether otolith elemental signatures record spatial information in an oceanic species, we sampled otoliths from Patagonian toothfish (Dissostichus eleginoides) and used an inductively coupled plasma mass spectrometer (ICP-MS) coupled to a laser ablation system to target the outer otolith edges corresponding to the period immediately before capture. Using multivariate analysis …

Feeding Ecology Of Juvenile Spiny Lobster, Panulirus Interruptus, On The Pacific Coast Of Baja California Sur, Mexico, Verónica Castañeda‐Fernández‐De‐Lara, Elisa Serviere‐Zaragoza, Sergio Hernández‐Vázquez, Mark J. Butler Iv

Biological Sciences Faculty Publications

Many aspects of the early life history of the red lobster Panulirus interruptus are little known, including the relationship between habitat structure, food resource availability, and nutrition of juveniles. We investigated the spatial and temporal differences in food intake, diet composition, and nutritional condition of juveniles at two sites along the Pacific coast of the Baja California Peninsula (Mexico) with contrasting oceanographic and biological conditions. One site (Arvin) is located inside a protected bay, Bahia Tortugas, where the waters are cooler and temperate seagrasses and macroalgae are the dominant benthic flora. The second site (Queen) in Bahia Sebastian Vizcaino was …

Age And Growth Of Scotia Sea Icefish, Chaenocephalus Aceratus, From The South Shetland Islands, M. La Mesa, J. Ashford, E. Larson, M. Vacchi

OES Faculty Publications

Samples of Chaenocephalus aceratus (Lönnberg) were collected during a trawl survey carried out around the South Shetland Islands in January–February 2002. Fish were caught by commercial bottom trawl fishing down to 500 m depth, using a stratified randomized sampling design. As observed in other recent surveys within the same area, C. aceratus represented one of the predominant species. Overall, 357 specimens ranging from 13 and 67 cm (TL) were selected for the present study. Ages were estimated by counting annuli present in the sagittal otoliths, exposed by grinding and polishing along their sagittal plane. To estimate the precision of age …