Fresh Water Studies Commons^™

Patterns Of Diatom Diversity Correlate With Dissolved Trace Metal Concentrations And Longitudinal Position In The Notheast Pacific Coastal Offshore Transition Zone, P. Dreux Chappell, E. Virginia Armbrust, Katherine A. Barbeau, Randelle M. Bundy, Jagruti Vedamati, Bethany D. Jenkins

OES Faculty Publications

Diatoms are important primary producers in the northeast Pacific Ocean, with their productivity closely linked to pulses of trace elements in the western high nitrate, low chlorophyll (HNLC) region of the oceanographic time series transect 'Line P.' Recently, the coastal-HNLC transition zone of the Line P transect was identified as a hotspot of phytoplankton productivity, potentially controlled by a combination of trace element and macronutrient concentrations. Here we describe diatom community composition in the eastern Line P transect, including the coastal- HNLC transition zone, with a method using high-throughput sequencing of diatom 18S gene amplicons. We identified significant correlations between …

Functions Of Ecosystems: Stream Metabolism As An Efficient And Effective Means To Gage The Health And Understand The Interworking Of Urban Streams In A Watershed Of Rock Island, Il, Ryan Johnson, Dr. Kevin Geedey

Celebration of Learning

Stream metabolism is a critical functional measure of stream health that integrates physical parameters like slope and discharge, with ecosystem functions like photosynthesis and respiration. Stream metabolism is widely studied; however, urban stream metabolism remains poorly understood. Stream metabolism was measured for five streams ranging from 1^st to 5^th orders from October 11^th to October 18^th 2017 and four streams ranging from 1^st to 4^th order from October 22^nd to 25^th 2017 located within an approximately 9.3 square kilometer watershed of Rock Island, IL that has an urban to suburban type of …

Cyanobacteria Reduce Quagga Mussel (Dreissena Rostriformis Bugensis) Spawning And Fertilization Success, Anna G. Boegehold, Nicholas S. Johnson, Jeffrey L. Ram, Donna R. Kashian

Environmental Science and Geology Faculty Research Publications

Quagga mussels (Dreissena rostriformis bugensis) are highly fecund broadcast spawners invasive to freshwaters of North America and western Europe. We hypothesized that environmental cues from phytoplankton can trigger gamete release in quagga mussels. Nutritious algae may stimulate dreissenid spawning, but less palatable food, such as bloom-forming cyanobacteria, could be a hindrance. The objective of our study was to test whether exposure to cyanobacteria can inhibit quagga mussel spawning and fertilization. We assessed spawning in the presence of serotonin, a known spawning inducer, where adult quagga mussels placed in individual vials were exposed to 13 cyanobacteria cultures and purified algal toxin …

The Relationship Between Measures Of Annual Livestock Disturbance In Western Riparian Areas And Stream Conditions Important To Trout, Salmon, And Char, Lindsey M. Goss, Brett B. Roper

Watershed Sciences Faculty Publications

Managing livestock disturbance in riparian zones in a manner that provides economic returns to ranchers while protecting streams is an important aspect of rangeland management on public lands in the western United States. Attempts to balance economic and ecologic outcomes have been made more difficult due to the presence of several salmonid species that are protected under the Endangered Species Act. One approach to proper management of livestock use near streams has been to define the allowable limits of disturbance using 2 metrics, streambank alteration and stubble height. We evaluated 153 stream reaches within the Interior Columbia Basin to determine …

Persistence Of Stream Restoration With Large Wood, Redwood National And State Parks, California, Diedra L. Rodriguez

Cal Poly Humboldt theses and projects

The conservation and recovery of anadromous salmonids (Oncorhynchus sp.) depend on stream restoration and protection of freshwater habitats. In-stream large wood dictates channel morphology, increases retention of terrestrial inputs such as organic matter, nutrients and sediment, and enhances the quality of fish habitat. Historic land use/land cover changes have resulted in aquatic systems devoid of large wood. Restoration by placement of large wood jams is intended to restore physical and biological processes. An important question for scientists and restoration managers, in addition to the initial effectiveness of restoration, is the persistence and fate of large wood installations. In this …

Impact Of Temperature Increase On Freshwater Fish Species: Energetics And Muscle Mechanics Of Two Centrarchids, Israt Jahan

Masters Theses

Fishes have evolved physiologically to live within a specific range of environmental variation and existence outside of that range can be stressful or fatal. These ranges can coincide for fishes that evolved in similar habitats. This study investigates physiological processes limiting thermal tolerance, specifically how changes in water temperature affect the swimming energetics and muscle mechanics in largemouth bass (Micropterus salmoides) and bluegill (Lepomis macrochirus). I focused on the impact of temperature change at the muscle level in these two species and the capacity to adapt to rapid changes in the environment. Fish were housed at …

Integrating Dynamic Subsurface Habitat Metrics Into Species Distribution Models, Stephanie Brodie, Michael G. Jacox, Steven J. Bograd, Heather Welch, Heidi Dewar, Kylie L. Scales, Sara M. Maxwell, Dana M. Briscoe, Christopher A. Edwards, Larry B. Crowder, Rebecca L. Lewison, Elliott L. Hazen

Biological Sciences Faculty Publications

Species distribution models (SDMs) have become key tools for describing and predicting species habitats. In the marine domain, environmental data used in modeling species distributions are often remotely sensed, and as such have limited capacity for interpreting the vertical structure of the water column, or are sampled in situ, offering minimal spatial and temporal coverage. Advances in ocean models have improved our capacity to explore subsurface ocean features, yet there has been limited integration of such features in SDMs. Using output from a data-assimilative configuration of the Regional Ocean Modeling System, we examine the effect of including dynamic subsurface …

Evaluation Of Cadmium Bioaccumulaiton Of Periphyton And Aquatic Invertebrates Within Tributaries Of The Buffalo National River, Jacob Rollins Mccauley

Student Theses and Dissertations

The Rush Mining District, located along the Buffalo River in Arkansas, has a significant history of metal-mining operations. The tails and spoils of these operations deposit heavy amounts of raw ore into streams, including the deposition of cadmium, a minor constituent. Periphyton and invertebrate samples from two creeks within the Rush Mining District were measured for cadmium. Additionally, two creeks with no history of mining were sampled. Periphyton samples from mining sites had significantly higher concentrations of cadmium than samples collected at control sites. Invertebrate samples were classified into trophic levels before analysis. Invertebrate samples collected at treatment sites only …

Variability In Methane Emissions From West Siberia's Shallow Boreal Lakes On A Regional Scale And Its Environmental Controls, Aleksandr F. Sabrekov, Benjamin R.K. Runkle, Mikhail V. Glagolev, Irina E. Terentieva, Victor M. Stephanenko, Oleg R. Kotsyurbenko, Shamil S. Maksyutov, Oleg S. Pokrovsky

Biological and Agricultural Engineering Faculty Publications and Presentations

Small lakes represent an important source of atmospheric CH4 from northern wetlands. However, spatiotemporal variations in flux magnitudes and the lack of knowledge about their main environmental controls contribute large uncertainty into the global CH4 budget. In this study, we measured methane fluxes from small lakes using chambers and bubble traps. Field investigations were carried out in July–August 2014 within the West Siberian middle and southern taiga zones. The average and median of measured methane chamber fluxes were 0.32 and 0.30 mgCH4 m−2 h−1 for middle taiga lakes and 8.6 and 4.1 mgCH4 m−2 h−1 for southern taiga lakes, respectively. …

Ecological Importance Of Invader Source Population And Disturbance In Aquatic Invasions, Nicole Elizabeth Graham

Graduate Theses and Dissertations

Invasive species are a global problem and their effects on recipient ecosystems may be mediated by disturbance and intraspecific variation. Crayfish can substantially influence stream structure and function, and invasive crayfish often have differential impacts than native crayfish in aquatic ecosystems. Since species traits often vary across a distribution, it is possible that invasive crayfish from different source populations may have distinct impacts on recipient ecosystem structure and function. In the Ozark Highlands of Arkansas and Missouri, USA, invasive O. neglectus (the Ringed Crayfish) may be leading to the displacement of native O. eupunctus (the Coldwater Crayfish). The objective of …

Delta‐Flux: An Eddy Covariance Network For A Climate‐Smart Lower Mississippi Basin, Benjamin R. K. Runkle, James R. Rigby, Michele L. Reba, Saseendran S. Anapalli, Joydeep Bhattacharjee, Ken W. Krauss, Lu Liang, Martin A. Locke, Kimberly A. Novick, Ruixiu Sui, Kosana Suvocarev, Paul M. White Jr.

Biological and Agricultural Engineering Faculty Publications and Presentations

Networks of remotely monitored research sites are increasingly the tool used to study regional agricultural impacts on carbon and water fluxes. However, key national networks such as the National Ecological Observatory Network and AmeriFlux lack contributions from the Lower Mississippi River Basin (LMRB), a highly productive agricultural area with opportunities for soil carbon sequestration through conservation practices. The authors describe the rationale to create the new Delta‐Flux network, which will coordinate efforts to quantify carbon and water budgets at seventeen eddy covariance flux tower sites in the LMRB. The network structure will facilitate climate‐smart management strategies based on production‐scale and …

Flight Of The Freshwater Fish, Michael H. Wilson

Capstones

Michael H. Wilson

Capstone Abstract

December 27, 2016

Flight of the Freshwater Fish

The Hudson River provides for millions of people as a path for commercial and private transportation, a source of food and energy, and perhaps most importantly for many living in the tri-state area as a destination for recreation and relaxation. The most overlooked feature of the river is how the wildlife shows clear signs of a changing climate and rapid environmental response to the impacts of global warming on the river.

Entire populations of fish species in the lower Hudson have been forced to leave the river …

Climate Change Impacts On Freshwater Wetland Hydrology And Vegetation Cover Cycling Along A Regional Aridity Gradient, Philip A. Fay, Glenn R. Guntenspergen, Jennifer H. Olker, W. Carter Johnson

Natural Resource Management Faculty Publications

Global mean temperature may increase up to 6°C by the end of this century and together with precipitation change may steepen regional aridity gradients. The hydrology, productivity, and ecosystem services from freshwater wetlands depend on their future water balance. We simulated the hydrology and vegetation dynamics of wetland complexes in the North American Prairie Pothole Region with the WETLANDSCAPE model. Simulations for 63 precipitation × temperature combinations spanning 6°C warming and −20% to +20% annual precipitation change at 19 locations along a mid-continental aridity gradient showed that aridity explained up to 99% of the variation in wetland stage and hydroperiod …

Presence Of The Cyanotoxin Microcystin In Arctic Lakes Of Southwestern Greenland, Jessica Trout-Haney, Zachary Wood, Kathryn Cottingham

Dartmouth Scholarship

Cyanobacteria and their toxins have received significant attention in eutrophic temperate and tropical systems where conspicuous blooms of certain planktonic taxa release toxins into fresh water, threatening its potability and safe use for recreation. Although toxigenic cyanobacteria are not confined to high nutrient environments, bloom-forming species, or planktonic taxa, these other situations are studied les often studied. For example, toxin production in picoplankton and benthic cyanobacteria—the predominant photoautotrophs found in polar lakes—is poorly understood. We quantified the occurrence of microcystin (MC, a hepatotoxic cyanotoxin) across 18 Arctic lakes in southwestern Greenland. All of the focal lakes contained detectable levels of …

Stream Microbial Communities As Potential Indicators Of River And Landscape Disturbance In North-Central Arkansas, Wilson Howard Johnson

Graduate Theses and Dissertations

In the past decade, 29 shale basins have been actively developed across 20 states for extraction of natural gas (NG) via horizontal drilling/hydraulic fracturing (=fracking). This includes ~5000 wells within the Fayetteville shale of north-central Arkansas. Development often impacts both river- and landscapes, and management requires catchment-level evaluations over time, with organismal presence/absence as indicators. For this study next-generation sequencing was used to identify/characterize microbial communities within biofilm of eight Arkansas River tributaries, so as to gauge potential catchment influences. Streams spanned a gradient of landscape features and hydrological flows, with four serving as ‘potentially impacted catchment zones’ (PICZ) and …

Dietary Effects On The Stoichiometry Of Growth, Regulation, And Wastes Of Ozark Stream Insect Detritivores, Halvor Matthew Halvorson

Graduate Theses and Dissertations

A widespread stressor, anthropogenic nitrogen (N) and phosphorus (P) pollution can increase resource nutrient content and alter animal community composition in freshwater ecosystems. In this dissertation, I used ecological stoichiometry theory to examine effects of diet nutrient content and leaf litter type on growth, regulation, and wastes of aquatic invertebrate detritivores. I tested effects of leaf litter diet carbon:phosphorus (C:P) on growth and stoichiometric regulation of the detritivorous caddisfly Pycnopsyche lepida and used results to determine a threshold elemental ratio of oak litter C:P=1620 that confers peak growth of this species. This empirical, growth-based approach provided a more accurate estimate …

The Role Of Hydrologic Regimes In Driving Morphologic Divergence And The Trait Compositions Of Fish Assemblages, Lindsey A. Bruckerhoff

Graduate Theses and Dissertations

The hydrologic regime is an important determinant of the ecological integrity of a stream. Hydrologic regimes are defined by the magnitude, timing, frequency, rate of change, and duration of high and low flow events and capture long term patterns of variability and predictability of water movement in a stream. Flow regimes influence many aspects of the biophysical environment in lotic systems; therefore organisms have adapted to natural flow patterns. We investigated how fish have adapted to flow regimes at both a population and community level. In the first study presented in this thesis, we hypothesized fish exhibit phenotypic divergence to …

Upscaling Methane Emission Hotspots In Boreal Peatlands, Fabio Cresto Aleina, Benjamin R. K. Runkle, Tim Brucher, Thomas Kleinen, Victor Brovkin

Biological and Agricultural Engineering Faculty Publications and Presentations

Upscaling the properties and effects of small-scale surface heterogeneities to larger scales is a challenging issue in land surface modeling. We developed a novel approach to upscale local methane emissions in a boreal peatland from the micro-topographic scale to the landscape scale. We based this new parameterization on the analysis of the water table pattern generated by the Hummock–Hollow model, a microtopography resolving model for peatland hydrology. We introduce this parameterization of methane hotspots in a global model-like version of the Hummock–Hollow model that underestimates methane emissions. We tested the robustness of the parameterization by simulating methane emissions for the …

Juvenile Survival And Adult Return As A Function Of Freshwater Rearing Life History For Coho Salmon In The Klamath River Basin, Molly Gorman

Cal Poly Humboldt theses and projects

The Scott and Shasta rivers, Klamath River tributaries, experience spatial disparity in habitat quality in spring and summer as a result of historical and current land-use. Juvenile Coho Salmon (Oncorhynchus kisutch) born in the upper tributary reaches often rear in natal streams before migrating to sea. However, those born in the lower reaches often encounter unsuitable habitat and emigrate during their first spring to seek non-natal rearing habitats. It is assumed that these early outmigrants are population losses. This study evaluated first-summer survival, and contribution to the adult population, of non-natal rearing juveniles in the Klamath River Basin. …

Invertebrate Drift In The Upper Columbia River With Implications For Young-Of-The-Year White Sturgeon, Ryan W. Reihart

EWU Masters Thesis Collection

"White sturgeon (Acipenser transmontanus) in the upper Columbia River have been in decline for over 60 years and are listed as critically endangered by the International Union for Conservation of Nature. Annual spawning produces dispersing larvae; however, recruitment into the juvenile age class has not occurred since the early 1970s. One hypothesis to explain this failure in recruitment is that larvae may not find adequate prey. Little is known about diet and prey availability for white sturgeon larvae, especially in Lake Roosevelt, a reservoir of the Columbia River. The Spokane Tribe of Indians collected littoral and mid-channel benthic drift samples …

Hydrology-Biology Response Relationships In The Ozark Highlands, Dustin Thomas Lynch

Graduate Theses and Dissertations

I examined flow-ecology relationships among stream communities in the Ozark Highlands, USA. I sampled fish, crayfish, and benthic macroinvertebrates during two consecutive summers, including a drought year (2012) and a flood year (2013). Biological response variables related to community structure were assessed via two different statistical methods: an Information Theoretic approach relating response variables to a priori selected predictor variables incorporating hydrology, habitat, geomorphology, and water quality, and canonical ordination using forward selection to relate these same response variables to a large assortment of hydrologic metrics. In addition to assessing metrics related to predicted natural flow, flow alteration at gaged …

Modeling Micro-Topographic Controls On Boreal Peatland Hydrology And Methane Fluxes, F. Cresto Aleina, Benjamin R. K. Runkle, T. Kleinen, Lars Kutzbach, J. Schneider, V. Brovkin

Biological and Agricultural Engineering Faculty Publications and Presentations

Small-scale surface heterogeneities can influence land-atmosphere fluxes and therefore carbon, water and energy budgets on a larger scale. This effect is of particular relevance for high-latitude ecosystems, because of the great amount of carbon stored in their soils. We introduce a novel micro-topographic model, the Hummock-Hollow (HH) model, which explicitly represents small-scale surface elevation changes. By computing the water table at the small scale, and by coupling the model with a process-based model for soil methane processes, we are able to model the effects of micro-topography on hydrology and methane emissions in a typical boreal peatland. In order to assess …

Urban Stream Burial Increases Watershed-Scale Nitrate Export, Jake J. Beaulieu, Heather E. Golden, Christopher D. Knightes, Paul M. Mayer, Sujay S. Kaushal, Michael J. Pennino, Clay P. Arango, David A. Balz, Colleen M. Elonen, Ken M. Fritz, Brian H. Hill

All Faculty Scholarship for the College of the Sciences

Nitrogen (N) uptake in streams is an important ecosystem service that reduces nutrient loading to downstream ecosystems. Here we synthesize studies that investigated the effects of urban stream burial on N-uptake in two metropolitan areas and use simulation modeling to scale our measurements to the broader watershed scale. We report that nitrate travels on average 18 times farther downstream in buried than in open streams before being removed from the water column, indicating that burial substantially reduces N uptake in streams. Simulation modeling suggests that as burial expands throughout a river network, N uptake rates increase in the remaining open …

Effects Of Landscape Disturbances On Autotrophic Processes Within Arkansas Ozark Streams, Bradley J. Austin

Graduate Theses and Dissertations

Land-use change is one of the most widespread human impacts and can influence abiotic and biotic processes within surrounding streams. For example, streams in agricultural and urban watersheds receive greater light and nutrient inputs that can promote increased algal growth and primary production. Natural gas (NG) infrastructure development, a recent land use change in many regions, may also stimulate forested stream primary production, by reducing forest cover and increasing sediments and nutrient transport. I sampled streams across a NG activity gradient for algal biomass and gross primary production (GPP) to assess potential effects of this emerging land-use type. Algal biomass …

Application Of High-Resolution Spectral Absorbance Measurements To Determine Dissolved Organic Carbon Concentration In Remote Areas, Armine Avagyan, Benjamin R. K. Runkle, Lars Kutzbach

Biological and Agricultural Engineering Faculty Publications and Presentations

Accurate quantification of dissolved organic carbon (DOC) in surface and soil pore waters is crucial for understanding changes in water resources under the influence of climate and land use changes. Sampling and laboratory analysis of DOC content at a sufficient temporal frequency are especially difficult to achieve for natural DOC sources like the extensive boreal and arctic mire landscapes due to their remoteness. Therefore, the goals of this paper are (1) to investigate the performance of a portable, high-resolution ultraviolet–visible light spectroscopic method for determining the DOC content of surface and soil pore water samples from a boreal mire complex …

Harvest Incentives: A Tool For Managing Aquatic Invasive Species, Bob Wiltshire, Nathan Stone, Marshall Meyers, Bill Hyatt, Lori Williams, Jason Goldberg, Susan Pasko, Leah Elwell

National Invasive Species Council

Conclusion

The success of any harvest incentive program to address aquatic invasive species will depend upon numerous biological, socioeconomic, and legal considerations. Programs that encourage harvest may be a successful management tool in targeting small, distinct populations; in high priority areas within a larger invasion; or they may play a supplementary role within larger control programs. Their use, however, will require careful review, planning, and monitoring to ensure success and that they do not unintentionally lead to further spread of invasive species, cause additional harm to native species, or waste valuable resources.

Inter-And Intra-Population Variability Across The Transcriptome Of Lake Baikal’S Endemic Copepod With Ramifications For Adapting To Climate Change, Larry L. Bowman Jr

Electronic Theses and Dissertations

The future of Lake Baikal’s biodiversity is uncertain in response to climate change. Unlike its diverse benthos, Lake Baikal’s zooplankton is species poor, with up to 96% of its biomass being composed of a single Calanoid copepod species, Epischura baikalensis. This study characterizes the genetic differentiation and differential gene expression of E. baikalensis. Using partial-transcriptome sequences obtained by 454 Rosche and Illumina sequencing technologies, the genetic differentiation at inferred single nucleotide polymorphism (SNP) sites and differential gene expression in populations sampled from various parts of the lake were analyzed. The functional genomics of genes showed significant differential …

Seasonal Variability As A Source Of Uncertainty In The West Siberian Regional Ch4 Flux Upscaling, A. F. Sabrekov, Benjamin R. K. Runkle, M. V. Glagolev, I E. Kleptsova, S. S. Maksyutov

Biological and Agricultural Engineering Faculty Publications and Presentations

This study compares seasonal and spatial variations in methane fluxes as sources of uncertainty in regional CH4 flux upscaling from the wetlands of West Siberia. The study examined variability in summertime CH4 emissions from boreal peatlands, with a focus on two subtaiga fen sites in the southern part of West Siberia (Novosibirskaya oblast). We measured CH4 flux, water table depth, air and peat temperature, pH and electric conductivity of peat water during three field campaigns in summer 2011 (9–12 July, 26–28 July and 20–21 August). Fluxes were measured with static chambers at sites chosen to represent two of the most …

The Surface Energy Balance And Its Drivers In A Boreal Peatland Fen Of Northwestern Russia, Benjamin R. K. Runkle, Christian Wille, Michal Gazovic, M. Wilmking, L. Kutzbach

Biological and Agricultural Engineering Faculty Publications and Presentations

Boreal peatland energy balances using the eddy covariance technique have previously been made in Alaska, Canada, Scandinavia, and Western Siberia, but not in the European portion of the Russian Federation. European Russia contains approximately 200,000 km2 of peatlands and has a boreal (subarctic), continental climate influencing the region’s energy balance. To help fill this research gap, the surface energy balance was determined for a boreal peatland fen in the Komi Republic of Russia for an 11-month period in 2008–2009 using the eddy covariance method. The total measurement period’s cumulative energy balance closure rate was 86%, with higher closure during the …

Issue Brief: Asset Management For Stormwater, New England Environmental Finance Center, Sustainable Communities Learning Network

Sustainable Communities Capacity Building

Asset management is a strategic approach to maintaining and sustaining infrastructure in order to meet the needs of the community at the lowest overall life cycle cost. This approach helps communities know how and where to prioritize limited funds in order to achieve the greatest benefit. Often applied to drinking water and wastewater infrastructure, this method is well suited to managing any assets, including stormwater systems.

This issue brief is intended to introduce local governments to the asset management process and to show how it can be applied in managing stormwater assets. It was adapted from an appendix written by …