Oceanography and Atmospheric Sciences and Meteorology Commons^™

Assessing The Impacts Of Climate Change On Streamflow And Reservoir Operation In Central Florida, Toni Panaou

USF Tampa Graduate Theses and Dissertations

Climate change is a global concern as it may affect many aspects of life, including water supply. A tool used to model climate change’s impacts is called a General Circulation Model (GCM). GCMs project future scenarios including temperature and precipitation, but these are designed at a coarse resolution and require downscaling for employment for regional hydrologic modeling. There is a vast amount of research on downscaling and bias-correcting GCMs data, but it is unknown whether these techniques alter precipitation signals embedded in these models or reproduce climate states that are viable for water resource planning and management. Using the Tampa, …

Investigating Marine Resources In The Gulf Of Mexico At Multiple Spatial And Temporal Scales Of Inquiry, Joshua Paul Kilborn

USF Tampa Graduate Theses and Dissertations

The work in this dissertation represents an attempt to investigate multiple temporal and spatial scales of inquiry relating to the variability of marine resources throughout the Gulf of Mexico large marine ecosystem (Gulf LME). This effort was undertaken over two spatial extents within the greater Gulf LME using two different time-series of fisheries monitoring data. Case studies demonstrating simple frameworks and best practices are presented with the aim of aiding researchers seeking to reduce errors and biases in scientific decision making. Two of the studies focused on three years of groundfish survey data collected across the West Florida Shelf (WFS), …

Resolving Chronological And Temperature Constraints On Antarctic Deglacial Evolution Through Improved Dating Methodology, Cristina Subt

USF Tampa Graduate Theses and Dissertations

In order to determine the timing of Antarctic ice sheet retreat and advance during the Late Quaternary, various tools are used to measure the age of marginal marine sediments. Carbonate 14C dating is a well-established approach, but requires foraminiferal microfossils, shells or other carbonate materials that are rare in most Antarctic regions, and may also suffer from vital effects, which can result in variability of up to 500 years in living organisms. Bulk acid insoluble organic (AIO) 14C dates are frequently as an alternative, but this approach works best where high productivity and sedimentation rates reign, and not too well …

Packaging Of Genetic Material By Gene Transfer Agents (Gtas) Produced By Marine Roseobacter Species And Their Effect On Stimulating Bacterial Growth, Shahd Bader Aljandal

USF Tampa Graduate Theses and Dissertations

Horizontal gene transfer is one of the most important mechanisms for prokaryotic genome innovation and evolution. Gene Transfer Agents (GTAs) are phage-like particles that package small fragments of the genome of a GTA-producing bacterial cell. GTA chromosomal gene clusters usually contain 15-conserved open reading frames (ORFs) and are present in most of the sequenced marine alpha-proteobacteria genomes. Some marine strains have been shown to produce GTA particles that were biologically active in marine environment.

GTA particles range in size, morphology and the amount of host DNA they package. To date, the characteristics of GTAs are largely based on observations of …

Reef Fish Biodiversity In The Florida Keys National Marine Sanctuary, Megan E. Hepner

USF Tampa Graduate Theses and Dissertations

The biological diversity of reef-fish in the Florida Keys National Marine Sanctuary (FKNMS) from 1999 – 2016 was evaluated in terms of abundance, biomass, species richness, evenness, Shannon diversity, Simpson diversity, and functional diversity, using observations collected by multiple agencies and institutions under the Reef Visual Census (RVC) program. To compare the different diversity indices species richness, Shannon diversity, Simpson diversity, and functional diversity were converted into effective number of species. I examined the seven indices by no-take marine zones, in seven benthic habitat strata, and across the three-distinct geographic subregions in the Florida Keys domain (Upper, Middle, and Lower …

Calibration-Free Spectrophotometric Measurements Of Carbonate Saturation States In Seawater, Erin E. Cuyler

USF Tampa Graduate Theses and Dissertations

This work describes efforts to improve methodologies and instrumentation for investigation of the marine CO₂ system. In the first section of my thesis, a method was developed that provides simple, calibration-free measurements of seawater carbonate saturation states (Ω_spec) based solely on the use of a laboratory spectrophotometer. Measurements of pH are made in paired optical cells, one with and one without added nitric acid. The amount of added nitric acid is determined through the direct proportionality between nitrate concentration and UV absorbance. After an initial calibration, the method is calibration-free and requires no volumetric or gravimetric analyses …

Genetic Identification And Population Characteristics Of Deep-Sea Cephalopod Species In The Gulf Of Mexico And Northwestern Atlantic Ocean, Amanda Sosnowski

USF Tampa Graduate Theses and Dissertations

Nearly all deep-sea cephalopod life history studies have been completed by examination of specimens collected in the wild. Much of this work is like piecing together a puzzle; knowledge of the life history of many species remains fragmented and hence, taxonomically and phylogenetically confused. Molecular approaches and sequencing technologies are powerful tools for deciphering wild-type cephalopod life history and population dynamics. Use of molecular markers offers additional certainty for identifying specimens damaged during deep-sea collections and can elucidate often cryptic, intra- and interspecific diversity. The research presented in this study assessed broad genetic patterns of biodiversity in deep-sea cephalopods from …

Stable Isotopes In The Eye Lenses Of Doryteuthis Plei: Exploring Natal Origins And Migratory Patterns In The Eastern Gulf Of Mexico, Brenna A. Meath

USF Tampa Graduate Theses and Dissertations

Stable isotope analysis is an emerging tool to examine trophic pathways and migratory patterns of marine organisms. Squid are widely distributed in coastal and deep water regions of the Gulf of Mexico. Stable isotope ratios of carbon and nitrogen found within cephalopod tissues can provide information on both trophic level and habitat of their food sources. More recently, ontogenetic changes in stable isotope ratios within squid eye lenses have been documented. Concentric layers of crystallin proteins are added to the lens as the squid ages; the center of the lens contains the oldest layer and the youngest layers are on …

Role Of Viruses Within Metaorganisms: Ciona Intestinalis As A Model System, Brittany A. Leigh

USF Tampa Graduate Theses and Dissertations

Marine animals live and thrive in a literal sea of microorganisms, yet are often able to maintain specific associations that are largely dictated by the environment, host immunity and microbial interactions. Animal-associated microbiomes include bacteria and viruses that vastly outnumber host cells, especially in the gut environment, and are considered to be integral parts of healthy, functioning animals that act as a metaorganism. However, the processes underlying the initial establishment of these microbial communities are not very well understood. This dissertation focuses on the establishment of a well-known developmental animal model, Ciona intestinalis (sea squirt), to study the establishment and …

Viruses In Marine Animals: Discovery, Detection, And Characterizarion, Elizabeth Fahsbender

USF Tampa Graduate Theses and Dissertations

Diseases in marine animals are emerging at an increasing rate. Disease forecasting enabled by virus surveillance presents a proactive solution for managing emerging diseases. Broad viral surveys aid in disease forecasting by providing baseline data on viral diversity associated with various hosts, including many that are not associated with disease. However, these viruses can become pathogens due to expansion in host or geographic range, as well as when changing conditions shift the balance between commensal viruses and the host immune system. Therefore, it is extremely valuable to identify and characterize viruses present in many different hosts in a variety of …

A Landscape Of Thermal Inequity: Social Vulnerability To Urban Heat In U.S. Cities, Bruce Coffyn Mitchell

USF Tampa Graduate Theses and Dissertations

A combination of the urban heat island effect and a rising temperature baseline resulting from global climate change inequitably impacts socially vulnerable populations residing in urban areas. This dissertation examines distributional inequity of exposure to urban heat by socially disadvantaged groups and minorities in the context of climate justice. Using Cutter’s hazards-of-place model, variables indicative of social vulnerability and biophysical vulnerability are statistically tested for their associations. Biophysical vulnerability is conceptualized utilizing a urban heat risk index calculated from summer 2010 LANDSAT imagery to measure land surface temperature , structural density through the normalized difference built-up index, and vegetation abundance …

Potential Impacts Of Accelerated Sea-Level Rise And Hurricane-Induced Storm Surge In Western Pasco County, Florida, Kittiya Harris

USF Tampa Graduate Theses and Dissertations

Sea levels have risen approximately 20 cm since the beginning of the 20th century and more than 3 cm in the past 20 years, suggesting that global sea level rise is accelerating. As sea levels continue to rise and storms become more intense, coastal property and populations become more susceptible to damage. Florida is especially vulnerable to hurricane-induced storm surge (HSS) and the onset of accelerated sea-level rise (ASLR) due to its extensive coastline and high population density along the coast. The main purpose of this research is to assess the potential economic impacts of ASLR and HSS for two …

The Rhetoric Of Scientific Authority: A Rhetorical Examination Of _An Inconvenient Truth_, Alexander W. Morales

USF Tampa Graduate Theses and Dissertations

This thesis project examines how scientific authority is produced through rhetorical practices instead of the “information deficit” model of science communication. By conducting a rhetorical analysis of the science documentary An Inconvenient Truth, this project demonstrates how the documentary format itself and the film’s leading agent, former United States Vice President Al Gore, attempt to persuade audiences through building degrees of scientific authority by employing multiple rhetorics or narrative themes of science to bolster the scientific facts supporting anthropogenic climate change. Additionally, I demonstrate how these narrative themes parallel three scholarly themes within the rhetoric of science literature: science …

Characterizing Gross Lesions In Corals On Fringing Reefs Of Taiwan And Hainan Island, China, Adrienne George

USF Tampa Graduate Theses and Dissertations

Visible lesions on coral colonies are potential indicators that environmental stressors are influencing a reef. To test this hypothesis, pairs of near-shore reefs on Taiwan were surveyed along an anthropogenically influenced gradient that included locations near the cities of Taipei and Taitung, and more remote reefs off Green Island. Two fringing reefs at Sanya, Hainan Island, a popular Chinese resort area, were also assessed. Field surveys were undertaken to detect, quantify and visually describe the occurrence of lesions at each site. Coral mucus samples were collected from both normal-appearing polyps and lesion-afflicted areas of colonies to assess carbon requirements of …

"There Is No Planet B": Frame Disputes Within The Environmental Movement Over Geoengineering, David Russell Zeller Jr.

USF Tampa Graduate Theses and Dissertations

This dissertation examines frame disputes within the environmental movement over geoengineering proposals. Among other core framing tasks, social movement organizations must evaluate solutions and strategies for the social problems they seek to address. These framings are frequently disputed by those within the movement. Recent controversies regarding a set of climate intervention proposals commonly known as geoengineering offer the opportunity to document the ongoing construction of competing visions of environmental sustainability. The nascent quality of these proposals generate dissonant framings—episodes where organizations within the environmental movement exhibit disagreement about one or more core framing tasks—a situation Goffman referred to as a …

Quantity Trumps Quality: Bayesian Statistical Accumulation Modeling Guides Radiocarbon Measurements To Construct A Chronology In Real-Time, Devon Robert Firesinger

USF Tampa Graduate Theses and Dissertations

The development of an accurate and precise geochronology is imperative to understanding archives containing information about Earth’s past. Unable to date all intervals of an archive, researchers use methods of interpolation to approximate age between dates. Sections of the radiocarbon calibration curve can induce larger chronological uncertainty independent of instrumental precision, meaning even a precise date may carry inflated error in its calibration to a calendar age. Methods of interpolation range from step-wise linear regression to, most recently, Bayesian statistical models. These employ prior knowledge of accumulation rate to provide a more informed interpolation between neighboring dates. This study uses …

Latitudinal Position And Trends Of The Intertropical Convergence Zone (Itcz) And Its Relationship With Upwelling In The Southern Caribbean Sea And Global Climate Indices, Kaitlyn E. Colna

USF Tampa Graduate Theses and Dissertations

The Intertropical Convergence Zone (ITCZ) is a feature that results from the ocean-atmosphere interactions in the tropics around the world. The ITCZ is characterized by surface wind convergence, tall storm clouds, and it forms a belt of high time-averaged precipitation around the globe. The ITCZ undergoes seasonal migrations between 5°S and 15°N roughly following the subsolar point on Earth with the seasons, with a mean annual position located slightly above the Equator, between 2° and 5°N.

This study tested the hypothesis that there was a northward shift in the median position of the ITCZ in the first decade of the …

How Lessons From A Past Disaster Can Influence Resilience And Climate Adaptation In Broward County, Florida, Hannah Rose Torres

USF Tampa Graduate Theses and Dissertations

In the face of future uncertainties, many places are struggling with decisions about how to prepare for and adapt to climate change. The purpose of this research is to shed light on the concept of resilience, and uncover lessons for resilience-building exposed by a past disaster, Hurricane Wilma.

The dissertation begins with an introduction (Chapter 1) detailing the research problem, key terms and overall research design. The study was conducted in three distinct phases. The first phase (Chapter 2), explored the concept of resilience to understand how it was defined in three South Florida communities. Content analyses of city and …

Southern Ocean Transport By Combining Satellite Altimetry And Temperature/Salinity Profile Data, Michael Kosempa

USF Tampa Graduate Theses and Dissertations

Zonal geostrophic velocity fields above 1975 dbar have been estimated for the Southern Ocean from 2004 to 2014 based on sea surface topography observed by Jason altimetry and temperature/salinity measured by Argo autonomous floats. The velocity at 1000 dbar estimated has been validated against Argo drift trajectory at the same pressure level available from the Asia Pacific Data Research Center (APDRC). Errors in mapping of dynamic ocean topography, temperature, and salinity have been quantified using the Southern Ocean State Estimate (SOSE). Analysis of errors reveals significant correlations between depth-dependent and –independent contributions to the integrated transport. Further analysis revealed optimal …

Light-Induced Protein Nitration And Degradation With Hono Emission, Hannah Meusel, Yasin Elshorbany, Uwe Kuhn, Thorsten Bartels-Rausch, Kathrin Reinmuth, Christopher J. Kampf, Yafang Cheng

USF St. Petersburg Campus Faculty Publications

Proteins can be nitrated by air pollutants (NO2), enhancing their allergenic potential. This work provides insight into protein nitration and subsequent decomposition in the presence of solar radiation. We also investigated light-induced formation of nitrous acid (HONO) from protein surfaces that were nitrated either online with instantaneous gas-phase exposure to NO2 or offline by an efficient nitration agent (tetranitromethane, TNM). Bovine serum albumin (BSA) and ovalbumin (OVA) were used as model substances for proteins. Nitration degrees of about 1% were derived applying NO2 concentrations of 100 ppb under VIS=UV illuminated conditions, while simultaneous decomposition of (nitrated) proteins was also found …

An Early Paleogene Palynological Assemblage From The Sabrina Coast, East Antarctica: New Species And Implications For Depositional History, Catherine Davies Smith

USF Tampa Graduate Theses and Dissertations

Palynological analyses of 13 samples from two sediment cores retrieved from the Sabrina Coast, East Antarctica, provide the first information regarding the paleovegetation within the Aurora Subglacial Basin. The assemblages, hereafter referred to as the Sabrina Flora, are dominated by angiosperms, with complexes of Gambierina (G.) rudata and G. edwardsii representing 38–66% of the assemblage and an abundant and diverse Proteaceae component. The Sabrina Flora also includes Battenipollis sectilis, Forcipites sp. and Nothofagidites spp. (mostly belonging to the N. cf. rocaensis-flemingii complex), along with a few fern spores, including Laevigatosporites ovatus, a moderate presence of conifers, and …

Development Of A Forecast Process For Meteotsunami Events In The Gulf Of Mexico, Leilani D. Paxton

USF Tampa Graduate Theses and Dissertations

The purpose of this research was to provide a better understanding of meteotsunamis over the eastern Gulf of Mexico along the west coast of Florida and to develop a process for forecasting those events. Meteotsunami waves develop from resonant effects of strong pressure perturbations greater than 1 hPa, moving in excess of 10 m s^-1, over water areas up to around 100 m in depth. Meteotsunami events over 0.3 m in height, as measured by three primary NOAA coastal tide gauges at Cedar Key, Clearwater Beach, and Naples, from 2007-2015, impact the Florida Gulf coastline several times per …

A Habitat Analysis Of Estuarine Fishes And Invertebrates, With Observations On The Effects Of Habitat-Factor Resolution, Brianna Michaud

USF Tampa Graduate Theses and Dissertations

Between 1988 and 2014, otter trawls, seine nets, and plankton nets were deployed along the salinity gradients of 18 estuaries by the University of South Florida and the Florida Fish and Wildlife Research Institute (FWRI, a research branch of the Florida Fish and Wildlife Conservation Commission). The purpose of these surveys was to document the responses of aquatic estuarine biota to variation in the quantity and quality of freshwater inflows that were being managed by the Southwest Florida Water Management District (SWFWMD).

In the present analyses, four community types collected by these gears were compared with a diversity of habitat …

Evaluation Of Search And Rescue Planning Tools On The West Florida Shelf, Benjamin O'Loughlin

USF Tampa Graduate Theses and Dissertations

The Coast Guard conducts over 20,000 search and rescue cases a year with approximately 5% of them occurring within the coastal waters of the West Florida Shelf (WFS). Each search effort is planned using the Coast Guard’s Search and Rescue Optimal Planning System (SAROPS) which uses model inputs to create composite probability distributions based on the results of Monte Carlo projections of thousands of particle trajectories. However, SAROPS is limited by the quality of model inputs and their associated errors. This study utilizes observations from three surface drifter deployments on the WFS to evaluate the effectiveness of available surface current …

Seasonal Temperature Variations Controlling Cave Ventilation Processes In Cueva Larga, Puerto Rico, Rolf Vieten, Amos Winter, Sophie Friederike Warken, Andrea Schrӧder-Ritzrau, Thomas E. Miller, Denis Scholz

International Journal of Speleology

Two years of cave monitoring investigate ventilation processes in Cueva Larga, a tropical cave in Puerto Rico. The cave is 1,440 m long with a large main passage (about 120,000 m³). Cave air pCO₂ in the main passage varies seasonally, between 600 ppm in winter and 1,800 ppm in summer. The seasonal variability in cave pCO₂ permits the estimation of a cave air exchange time of 36 ± 5 days and a winter ventilation rate of 3,300 ± 1,000 m³/day for the main cave passage. Calculations of virtual temperature and differences between cave and …

Abundance Of Archaias Angulatus On The West Florida Coast Indicates The Influence Of Carbonate Alkalinity Over Salinity, Sean Thomas Beckwith

USF Tampa Graduate Theses and Dissertations

Archaias angulatus, a large symbiont-bearing foraminifer (Order Miliolida) that produces a Mg-calcite shell, is common throughout the Caribbean and warm western Atlantic region. This species lives abundantly in seagrass beds along the Springs Coast of northwest Florida (up to 4 adults per gram of sediment) where spring-fed rivers emerge from a limestone aquifer, and in Florida Bay to the southeast (25 adults/g) where the sediment is primarily biogenic carbonate. In contrast, live specimens are seldom found in the seagrass beds along the central-west coast of Florida, where barrier islands are dominated by quartz sand. My working hypothesis is that substratum …

Sunlight Induced Chlorophyll Fluorescence In The Near-Infrared Spectral Region In Natural Waters: Interpretations Of The Narrow Reflectance Peak Around 761nm, Yingcheng Lu, Linhai Li, Minwei Zhang, Shaojie Sun, Chunguang Lv

Marine Science Faculty Publications

Sunlight induced chlorophyll a fluorescence (SICF) can be used as a probe to estimate chlorophyll a concentrations (Chl) and infer phytoplankton physiology. SICF at ∼685 nm has been widely applied to studies of natural waters. SICF around 740 nm has been demonstrated to cause a narrow reflectance peak at ∼761 nm in the reflectance spectra of terrestrial vegetation. This narrow peak has also been observed in the reflectance spectra of natural waters, but its mechanism and applications have not yet been investigated and it has often been treated as measurement artifacts. In this study, we aimed to interpret …

Monitoring And Mitigation Of Elevated Co2 Impacts Using Microalgae, Terry-Rene Wiesner Brown

USF Tampa Graduate Theses and Dissertations

Climate change is arguably the greatest environmental and economic challenge of our time. There are considerable documented and projected impacts to both human and natural systems as a result of climate change. These impacts include changes in temperature, sea level, precipitation patterns, and biogeography of ecologically and economically relevant species, including pathogens. One of the main drivers of climate change is elevated levels of atmospheric carbon dioxide (CO₂), a greenhouse gas. Since pre-industrial times, atmospheric CO₂ levels have increased from approximately 280 ppm to over 400 ppm, as a result of fossil fuel combustion, cement production and …

Photic Stress In Symbiont-Bearing Reef Organisms: Analyses Of Photosynthetic Performance, Natasha Mendez-Ferrer

USF Tampa Graduate Theses and Dissertations

Photo-oxidative stress is one of the key factors that can induce bleaching in reef organisms. With the decline of coral reefs and recurrent bleaching events, many studies have focused on understanding the mechanism behind this phenomenon. Two of the hypotheses that explain how the photosynthetic performance of the symbiont is affected and influences bleaching are: (1) disruption of the photosynthetic pathway by direct damage to the photosystem II (PSII), and (2) by inhibition of the Calvin-Benson cycle. In this dissertation I examine different aspects of photosynthetic performance in symbiont-bearing reef organisms and how this is influenced by symbiont loss and …

Applications Of Satellite Geodesy In Environmental And Climate Change, Qian Yang

USF Tampa Graduate Theses and Dissertations

Satellite geodesy plays an important role in earth observation. This dissertation presents three applications of satellite geodesy in environmental and climate change. Three satellite geodesy techniques are used: high-precision Global Positioning System (GPS), the Gravity Recovery and Climate Experiment (GRACE) and Interferometric Synthetic Aperture Radar (InSAR). In the first study, I use coastal uplift observed by GPS to study the annual changes in mass loss of the Greenland ice sheet. The data show both spatial and temporal variations of coastal ice mass loss and suggest that a combination of warm atmospheric and oceanic condition drove these variations. In the second …