Oceanography and Atmospheric Sciences and Meteorology Commons^™

Phenology Of Cupressaceae Urban Infrastructure Related To Its Pollen Content And Meteorological Variables, A. Monroy-Colín, J. M. Maya-Manzano, I. Silva-Palacios, R. Tormo-Molina, R. Pecero-Casimiro, Á. Gonzalo-Garijo, S. Fernández-Rodríguez

Articles

Cupressaceae pollen is one of the major airborne allergens of the Mediterranean region and in other regions around the world. Pollen production of these species causes considerable allergic problems during winter, being this type of pollen the most abundant in this period of the year. This work aims to relate phenology, meteorology and airborne pollen records in these species. Aerobiological sampling was carried out in Badajoz (SW Spain) from 2016 to 2018 using Hirst-type volumetric sampler. Pollination phenology was studied in 50 specimens, ten of Cupressus macrocarpa, ten of Cupressus arizonica, 15 of Cupressus sempervirens and 15 of …

Standardized Short-Term Acute Heat Stress Assays Resolve Historical Differences In Coral Thermotolerance Across Microhabitat Reef Sites, Christian R. Voolstra, Carol Buitrago-López, Gabriela Perna, Anny Cárdenas, Benjamin C. C. Hume, Nils Rädecker, Daniel J. Barshis

Biological Sciences Faculty Publications

Coral bleaching is one of the main drivers of reef degradation. Most corals bleach and suffer mortality at just 1–2°C above their maximum monthly mean temperatures, but some species and genotypes resist or recover better than others. Here, we conducted a series of 18‐hr short‐term acute heat stress assays side‐by‐side with a 21‐day long‐term heat stress experiment to assess the ability of both approaches to resolve coral thermotolerance differences reflective of in situ reef temperature thresholds. Using a suite of physiological parameters (photosynthetic efficiency, coral whitening, chlorophyll a , host protein, algal symbiont counts, and algal type association), we assessed …

Spatial And Temporal Genetic Structure Of Winter-Run Steelhead (Oncorhynchus Mykiss) Returning To The Mad River, California, Steven R. Fong

Cal Poly Humboldt theses and projects

Distinct populations of steelhead in the wild are in decline. The propagation of steelhead in hatcheries has been used to boost population numbers for recreational fisheries and for use in conservation. However, hatchery breeding practices of steelhead can result in changes in genetic structure. I investigated the genetic structure of winter-run steelhead (Oncorhynchus mykiss) returning to the Mad River, California, where a hatchery has been used enhance production for recreational fisheries since 1971. Genetic variability in Mad River steelhead was evaluated using 96 single nucleotide polymorphisms (SNPs) among 4203 individuals, including the Mad River and nearby locations, and …

An International Laboratory Comparison Of Dissolved Organic Matter Composition By High Resolution Mass Spectrometry: Are We Getting The Same Answer?, Jeffrey A. Hawkes, Juliana D'Andrilli, Jeffrey N. Agar, Mark P. Barrow, Stephanie M. Berg, Núria Catalán, Hongmei Chen, Rosalie K. Chu, Richard B. Cole, Thorsten Dittmar, Rémy Gavard, Gerd Gleixner, Patrick G. Hatcher, Chen He, Nancy J. Hess, Ryan H.S. Hutchins, Amna Ijaz, Hugh E. Jones, William Kew, Maryam Khaksari, Diana Catalina Palacio Lozano, Jitao Lv, Lynn R. Mazzoleni, Beatriz E. Noriega-Ortega, Helena Osterholz, Nikola Radoman, Christina K. Remucal, Nicholas D. Schmitt, Simeon K. Schum, Quan Shi, Carsten Simon, Gabriel Singer, Rachel L. Sleighter, Aron Stubbins, Mary J. Thomas, Nikola Tolic, Shuzhen Zhang, Phoebe Zito, David C. Podgorski

Chemistry & Biochemistry Faculty Publications

High-resolution mass spectrometry (HRMS) has become a vital tool for dissolved organic matter (DOM) characterization. The upward trend in HRMS analysis of DOM presents challenges in data comparison and interpretation among laboratories operating instruments with differing performance and user operating conditions. It is therefore essential that the community establishes metric ranges and compositional trends for data comparison with reference samples so that data can be robustly compared among research groups. To this end, four identically prepared DOM samples were each measured by 16 laboratories, using 17 commercially purchased instruments, using positive-ion and negative-ion mode electrospray ionization (ESI) HRMS analyses. The …

Science, Diplomacy, And The Red Sea's Unique Coral Reef: It's Time For Action, Karine Kleinhaus, Ali Al-Sawalmih, Daniel J. Barshis, Amatzia Genin, Lola N. Grace, Ove Hoegh-Guldberg, Yossi Loya, Anders Meiborn, Eslam O. Osman, Jean-Daniel Ruch, Yonathan Shaked, Christian R. Voolstra, Assaf Zvuloni, Maoz Fine

Biological Sciences Faculty Publications

Rapid ocean warming due to climate change poses a serious risk to the survival of coral reefs. It is estimated that 70–90 percent of all reefs will be severely degraded by mid-century even if the 1.5°C goal of the Paris Climate Agreement is achieved. However, one coral reef ecosystem seems to be more resilient to rising sea temperatures than most others. The Red Sea’s reef ecosystem is one of the longest continuous living reefs in the world, and its northernmost portion extends into the Gulf of Aqaba. The scleractinian corals in the Gulf have an unusually high tolerance for the …

Assessing Agricultural Risk Management Using Historic Crop Insurance Loss Data Over The Ogallala Aquifer, Julian Reyes, Emile Elias, Erin M.K. Haacker, Amy Kremen, Lauren Parker, Caitlin Rottler

Department of Earth and Atmospheric Sciences: Faculty Publications

Much of the agricultural production in the Ogallala Aquifer region relies on groundwater for irrigation. In addition to declining water levels, weather and climate-driven events affect crop yields and revenues. Crop insurance serves as a risk management tool to mitigate these perils. Here, we seek to understand what long-term crop insurance loss data can tell us about agricultural risk management in the Ogallala. We assess patterns and trends in crop insurance loss data from the U.S. Department of Agriculture Risk Management Agency. Indemnities, or insurance payments, totaled $22 billion from 1989–2017 for the 161 counties that overlie the Ogallala Aquifer. …

Soil Carbon Dynamics And Greenhouse Gas Emissions In Conservation Tillage Systems At Multiple Scales, Yawen Huang

Theses and Dissertations--Plant and Soil Sciences

Conservation tillage practices like no-tillage and reduced tillage have been widely implemented worldwide, with expectations they would provide multiple benefits (e.g., yield enhancement and soil carbon sequestration) for food security and climate adaptation and mitigation. However, the adoption of conservation tillage faces both opportunities and challenges. A knowledge gap still exists regarding the effects of conservation tillage on the carbon cycle in agroecosystems. This dissertation reflects a comprehensive evaluation of conservation tillage at multiple scales using an integrated systems approach, a combination of data synthesis, the agriculture ecosystem model, and field observations and measurements. I first conducted a meta-analysis to …

Assessing The Hierarchy Of Long-Term Environmental Controls On Diatom Communities Of Yellowstone National Park Using Lacustrine Sediment Records, Victoria Chraibi, Sherilyn C. Fritz

Department of Earth and Atmospheric Sciences: Faculty Publications

An ecosystem’s ability to maintain structure and function following disturbance, defined as resilience, is influenced by a hierarchy of environmental controls, including climate, surface cover, and ecological relationships that shape biological community composition and productivity. This study examined lacustrine sediment records of naturally fishless lakes in Yellowstone National Park to reconstruct the response of aquatic communities to climate and trophic cascades from fish stocking. Sediment records of diatom algae did not exhibit a distinct response to fish stocking in terms of assemblage or algal productivity. Instead, 3 of 4 lakes underwent a shift to dominance by benthic diatom species from …

Ice Algae Resource Utilization By Benthic Macro- And Megafaunal Communities On The Pacific Arctic Shelf Determined Through Lipid Biomarker Analysis, Chelsea Wegner Koch, Lee W. Cooper, Jacqueline M. Grebmeier, Karen Frey, Thomas A. Brown

Geography

We studied ice algae utilization by benthic fauna from the northern Bering and Chukchi Seas using highly branched isoprenoid (HBI) biomarkers. We assessed whether various food acquisition strategies influence the observed HBI signatures. The proportion of phytoplankton to ice algae-sourced HBIs was determined through the H-Print approach that is presumed to reflect the percentage of sea ice organic carbon (iPOC) incorporated into tissues, relative to phytoplankton organic carbon. Cluster analysis separated 3 groups based on location and feeding strategy that were significantly influenced by annual sea ice persistence. Ice algae utilization was most significant in the northeast Chukchi Sea, where …

Microbial Degradability Of Terrigenous, Marsh-Exported, And Estuarine Colored Dissolved Organic Matter In Long Island Sound, John R. Supino

Dissertations and Theses

The Long Island Sound is one of the world's most urbanized estuaries, polluted from excess nutrients which impact the quality of water through increased biological productivity. Dissolved organic matter (DOM) is a sensitive indicator of anthropogenic pollution and nutrient enrichment in coastal waters as well as an important part of the carbon cycle and serves as a primary food source for aquatic food webs. Additionally, the colored portion of DOM (CDOM) impacts coastal optical properties, ocean color, and light attenuation. High levels of CDOM have been shown to inhibit the growth of phytoplankton and limit photosynthesis, damaging the food chain …

Gulf Coast Marine Laboratories Past, Present And Future, Donald F. Boesch

Gulf and Caribbean Research

I spent my nearly 50—year career in marine science working at marine laboratories, most of that as a chief executive officer. So, it is appropriate that my reflections are about marine laboratories, rather than my own science. After relating my career course, I turn my attention to the history and development of marine laboratories along the U.S. coast of the Gulf of Mexico (GOM). Surprisingly, the region’s first laboratory was actually constructed in 1903 at Cameron, LA, but operated less than a decade before closing. It was not until after World War II that the university—affiliated marine laboratories of today …

Pelagic Sargassum Prediction And Marine Connectivity In The Tropical Atlantic, Donald R. Johnson, James S. Franks, Hazel A. Oxenford, Shelly-Ann L. Cox

Gulf and Caribbean Research

Since 2011, pelagic Sargassum has experienced extraordinary blooms in the Tropical Atlantic where a system of persistent but seasonally variable currents has retained and consolidated it in large masses. Although beneficial at sea, principally as a unique pelagic habitat, when Sargassum inundates the nearshore environment it can have catastrophic effects on tourism, fisheries, health, and local ecosystems. Providing advanced warning of arrival dates of large masses of Sargassum is critical for enabling preparations and planning for its removal, use, and mitigation. Predictions of arrival time and location involve satellite identification of Sargassum at sea together with ocean current data for …

Changes In Prey Mortality: The Efects Of Multiple Predators And Temperature On California Mussels, Wesley Hull

Cal Poly Humboldt theses and projects

Organisms serve as prey to a variety of predators within natural systems, detecting threats through physical and chemical means. While predator feeding behavior is also affected by the presence of other predators, it is unclear whether differing modes of detection have similar effects on predator feeding behavior. In rocky intertidal zones in northern California, the California mussel (Mytilus californianus) is a competitively dominant foundation species consumed by a variety of predators. I quantified the individual and combined effects of ochre star (Pisaster ochraceus) and rock crab (Romaleon antennarium) predation on mussels by implementing mussel …

Semi-Supervised Adversarial Domain Adaptation For Seagrass Detection Using Multispectral Images In Coastal Areas, Kazi Aminul Islam, Victoria Hill, Blake Schaeffer, Richard Zimmerman, Jiang Li

Electrical & Computer Engineering Faculty Publications

Seagrass form the basis for critically important marine ecosystems. Previously, we implemented a deep convolutional neural network (CNN) model to detect seagrass in multispectral satellite images of three coastal habitats in northern Florida. However, a deep CNN model trained at one location usually does not generalize to other locations due to data distribution shifts. In this paper, we developed a semi-supervised domain adaptation method to generalize a trained deep CNN model to other locations for seagrass detection. First, we utilized a generative adversarial network loss to align marginal data distribution between source domain and target domain using unlabeled data from …

Diel Temperature And Ph Variability Scale With Depth Across Diverse Coral Reef Habitats, Tyler Cyronak, Yuichiro Takeshita, Travis A. Courtney, Eric H. Decarlo, Bradley D. Eyre, David I. Kline, Todd R. Martz, Heather Page, Nichole Price, Jennifer Smith, Laura Stoltenberg, Martin Tresguerres, Andreas J. Andersson

Marine & Environmental Sciences Faculty Articles

Coral reefs are facing intensifying stressors, largely due to global increases in seawater temperature and decreases in pH. However, there is extensive environmental variability within coral reef ecosystems, which can impact how organisms respond to global trends. We deployed spatial arrays of autonomous sensors across distinct shallow coral reef habitats to determine patterns of spatiotemporal variability in seawater physicochemical parameters. Temperature and pH were positively correlated over the course of a day due to solar heating and light‐driven metabolism. The mean temporal and spatial ranges of temperature and pH were positively correlated across all sites, with different regimes of variability …

The Vezo Communities And Fisheries Of The Coral Reef Ecosystem In The Bay Of Ranobe, Madagascar, Shane Abeare

LSU New Orleans Theses and Dissertations

Madagascar, a country whose extraordinary levels of endemism and biodiversity are celebrated globally by scientists and laymen alike, yet historically has received surprisingly little research attention, is the setting of the present dissertation. Here, I contribute to the need for applied research by: 1) focusing on the most intensely fished section of the Toliara Barrier Reef, the Bay of Ranobe; 2) characterizing the marine environment, the human population, and the fisheries; and 3) collecting the longest known time-series of data on fisheries of Madagascar, thereby providing a useful baseline for future analyses. In Chapter 1, the bathymetry of the Bay …

Vintage Report 2019: North Willamette Valley, Gregory V. Jones

Linfield University Wine Studies Reports

This report describes the impacts of climate and phenology on vintage for the North Willamette Valley in Oregon in 2019. A relatively mild early winter in 2018 was followed by a cold and wet second half of winter in 2019 and then a wet, but warm, spring. The growing season saw a few mild frosts during late April, but started off warmer than average, moderating through mid-vintage with fewer than average heat spikes. Near-record precipitation amounts during late June and early July brought increased disease pressure to the region. The vintage will be remembered for the early rains in September …

A Risk Analysis Of Microplastic Consumption In Filter Feeders, Sheri Rahman

HCNSO Student Capstones

Microplastics (plastic particles < 5 mm) pose a serious threat to marine organisms, as researchers have documented such particles in the gut contents of numerous species. In particular, filter feeders are at risk of consuming microplastics because they may accidentally consume the particulates when feeding or they may prey on species that have already consumed them. The goals of this research were to evaluate the risks that different filter feeders face in regards to microplastic consumption through the analysis of the calculated Microplastic Consumption Rates for numerous species of filter feeders. Factors that could potentially affect this risk were also considered, including ocean basin, environment type, salinity, life stage, IUCN status, and filtration technique. Initial analysis showed that body size greatly impacted a species’ risk of microplastic consumption and further tests were completed to evaluate overall microplastic contamination for each species. Microplastic consumption and microplastic contamination values were evaluated and analyzed to determine which filter feeding species were most at risk of experiencing ecological effects from microplastic pollution. From a resource management perspective, this research highlights the filter feeding species most at risk, contributing to the development of more effective plastic waste management policies.

Spatial And Temporal Trends Of Southeastern Florida's Octocoral Comunity, Alexandra Hiley

HCNSO Student Theses and Dissertations

In the Caribbean, local and global stressors have driven significant declines in scleractinian coral cover up to 80% in only three decades. Following these declines, phase shifts in benthic community composition have been reported. Shifts towards macroalgal dominance has been the most widely observed case, however, shifts towards octocoral and sponge dominance have also been reported. In Florida, USA, the Florida Reef Tract is an extensive barrier reef system that contains diverse assemblages of corals, sponges, fish, and other taxa. The Southeast Florida Reef Tract (SEFRT) within the Southeast Florida Coral Reef Conservation Area is the northern portion of this …

Arctic Thaw: Environmental Exploitation For Economic Profit, Stephen F. Moulton

HCNSO Student Capstones

“Arctic Thaw: Environmental Exploitation for Economic Profit,” is a comprehensive, interdisciplinary assessment of Arctic climate change (CC) impacts. Arctic CC alters the regions’ temperature, annual ice cover, and sea levels. This alteration influences the global economy through enriched international trade and fossil hydrocarbon extraction developments. This capstone examines the Arctic’s response to CC through economic statistical analysis, tracking relative sea-level (RSL) trends, as well as performing hydrographic and modeling reviews. The Northern Rim Countries (NRCs) economic analysis assesses potential CC and GSLR impacts by applying statistical techniques to calculate its effect on each country’s gross domestic product (GDP). The tidal …

Weather And Climate Summary And Forecast: December 2019 Report, Gregory V. Jones

Linfield University Wine Studies Reports

This report provides a summary of the weather and climate forecast for December 2019. It includes forecast information specific to the Pacific Northwest and the western United States, as well as forecast information for other portions of the United States and abroad.

Sargassum Infauna Community Structure In The Florida Straits And Gulf Stream, Dayna S. Hunn

HCNSO Student Theses and Dissertations

Community structure of Sargassum-associated organisms was examined from 11 sampling locations in the Florida Straits and Gulf Stream from May—September 2018 using a combination of modified shrimp trawls and dip nets. A total of 5413 organisms were collected from Sargassumhabitat representing 14 species from 10 families. A core group of organisms (Platynereis dumerilii, Litiopa melanostoma, Portunus sayi, Portunus spinimanus, Leander tenuicornis, and Latreutes fucorum) were found throughout the entirety of the geographic range surveyed. This core community was not found to vary significantly with increasing distance to shore (P=0.217) and latitude …

Characterization Of Bacterial Communities In Biscayne Bay Through Genomic Analysis, Eric Fortman

HCNSO Student Theses and Dissertations

Biscayne Bay is a shallow oligotrophic estuary in Southeast Florida. Channelization of rivers, and dredging of canals has greatly altered the historical flow of fresh water into the bay. This, coupled with the rise of a sprawling urban & suburban development, has greatly increased the nutrient load in the bay. This study examined the bacterial community at 14 stations throughout Biscayne Bay —6 stations were located at the mouths of canals; 1 upstream-canal station; 6 stations in the center of the bay; and one ocean influenced station, located near the entrance to the bay. One liter, surface water samples were …

Importance Of Refractory Ligands And Their Photodegradation For Iron Oceanic Inventories And Cycling, Christel Hassler, Damien Cabanes, Sonia Blanco-Ameijeiras, Sylvia G. Sander, Ronald Benner

Faculty Publications

Iron is an essential micronutrient that limits primary production in up to 40% of the surface ocean and influences carbon dioxide uptake and climate change. Dissolved iron is mostly associated with loosely characterised organic molecules, called ligands, which define key aspects of the iron cycle such as its residence time, distribution and bioavailability to plankton. Models based on in situ ligand distributions and the behaviour of purified compounds include long-lived ligands in the deep ocean, bioreactive ligands in the surface ocean and photochemical processes as important components of the iron cycle. Herein, we further characterise biologically refractory ligands in dissolved …

Cytotoxicity And Mutagenicity Of Disinfection Byproduct Mixtures Formulated Using Free Chlorine And Monochloramine, Yonas Ghebremedhin

Graduate Theses and Dissertations

Bioassays have been used extensively to assess various toxicity endpoints of drinking water disinfection byproducts (DBPs), but an emphasis on single compounds prevails. In this research, DBP mixtures were assessed using a cytotoxicity test with Chinese Hamster Ovary (CHO) cells and an Ames fluctuation test with Salmonella typhimurium TA-98 and TA-100 with and without S9 rat liver homogenate. Seven whole mixture DBP concentrates were formulated using reconstituted natural organic matter (NOM) extracts from the Upper Mississippi River using scaled disinfectant dosing protocols with free chlorine and monochloramine in the presence and absence of added bromide. DBPs were identified by gas …

Vegetation Classification And Mapping, Missouri National Recreational River, Tom Baldvins, Matt Ley, David Jones, Joe Stevens, Hannah Pilkington

United States National Park Service: Publications

Executive Summary

The vegetation inventory project at Missouri National Recreational River (MNRR) classified and mapped vegetation within the park administrative boundary and estimated thematic map accuracy quantitatively. The project was conducted over a four year period from the summer of 2015 to the winter of 2019.

The project follows guidance provided by the National Park Service (NPS) Vegetation Mapping Inventory (VMI) Program. The overall process includes initial planning and scoping, imagery procurement, field data collection, data analysis, imagery interpretation and classification, and accuracy assessment. The initial planning and scoping meetings to support study plan development took place in December, 2009, …

Growth Phase Proteomics Of The Heterotrophic Marine Bacterium Ruegeria Pomeroyi, Dasha Krayushkina, Emma Timmins-Schiffman, Jessica Faux, Damon H. May, Michael Riffle, H. Rodger Harvey, Brook L. Nunn

OES Faculty Publications

The heterotrophic marine bacterium, Ruegeria pomeroyi, was experimentally cultured under environmentally realistic carbon conditions and with a tracer-level addition of ¹³C-labeled leucine to track bacterial protein biosynthesis through growth phases. A combination of methods allowed observation of real-time bacterial protein production to understand metabolic priorities through the different growth phases. Over 2000 proteins were identified in each experimental culture from exponential and stationary growth phases. Within two hours of the ¹³C-labeled leucine addition, R. pomeroyi significantly assimilated the newly encountered substrate into new proteins. This dataset provides a fundamental baseline for understanding growth phase differences in molecular …

Histological Evidence Of Annual And Lunar Reproductive Rhythms Of Atlantic Sea Urchin, Arbacia Punctulata In The Gulf Of Mexico: Changes In Nutritive Phagocytes In Relation To Gametogenesis, Eleazar Hernandez Ii

Theses and Dissertations

Environmental phenomena such as temperature, photoperiod, tidal cycle, and lunar rhythm act as external cues that stimulate the reproductive activity of marine organisms. In this study, I report the annual and lunar reproductive cycles, and changes in nutritive phagocytes (NPs) in relation to gonadal maturation of Atlantic sea urchin (Arbacia punctulata, a primeval species). Monthly and weekly changes in gonadal development/maturation were observed histologically. In male, the testicular lobules were densely packed with sperm from June to August. In female, on the other hand, mature eggs first appeared in some ovaries in May, numerically increased from June to …

Investigations Of Aerobic Methane Oxidation In Two Marine Seep Environments: Part 1—Chemical Kinetics, Eric W. Chan, Allan M. Shiller, Dongjoo J. Joung, Eleanor C. Arrington, David L. Valentine, Molly C. Redmond, John A. Breier, Scott A. Socolofsky, John D. Kessler

School of Earth, Environmental, & Marine Sciences Faculty Publications

Microbial aerobic oxidation is known to be a significant sink of marine methane (CH4), contributing to the relatively minor atmospheric release of this greenhouse gas over vast stretches of the ocean. However, the chemical kinetics of aerobic CH4 oxidation are not well established, making it difficult to predict and assess the extent that CH4 is oxidized in seawater following seafloor release. Here we investigate the kinetics of aerobic CH4 oxidation using mesocosm incubations of fresh seawater samples collected from seep fields in Hudson Canyon, U.S. Atlantic Margin and MC118, Gulf of Mexico to gain a fundamental chemical understanding of this …

Untapped Potential Of Gorgonian Octocorals For Detecting Environmental Change In Biscayne National Park, Florida, Usa, Selena A. Kupfner Johnson

USF Tampa Graduate Theses and Dissertations

One consequence of dramatic stony-coral loss has been recognition that gorgonian octocorals (Anthozoa: Octocorallia) have emerged among the dominant reef fauna. However, gorgonians are notoriously difficult to field-identify and consequently have been underrepresented in most monitoring efforts resulting in a lack of long-term data. The rich diversity of habitats, close proximity to the urban center of Miami, and connectivity to other areas of Florida have made Biscayne National Park an active location for reef research since its establishment in 1968. As such, a plethora of data (e.g., museum specimen and species abundance data) has been collected and stored in archives …