Oceanography and Atmospheric Sciences and Meteorology Commons^™

Population Genetics Reveals Bidirectional Fish Movement Across The Continental Divide Via An Interbasin Water Transfer, Audrey C. Harris, Sara J. Oyler-Mccance, Jennifer A. Fike, Matthew P. Fairchild, Christopher M. Kennedy, Harry J. Crockett, Dana L. Winkelman, Yoichiro Kanno

United States Geological Survey: Staff Publications

Interbasin water transfers are becoming an increasingly common tool to satisfy municipal and agricultural water demand, but their impacts on movement and gene flow of aquatic organisms are poorly understood. The Grand Ditch is an interbasin water transfer that diverts water from tributaries of the upper Colorado River on the west side of the Continental Divide to the upper Cache la Poudre River on the east side of the Continental Divide. We used single nucleotide polymorphisms to characterize population genetic structure in cutthroat trout (Oncorhynchus clarkii) and determine if fish utilize the Grand Ditch as a movement corridor. …

Foraging Habitat Selection Of Shrubland Bird Community In Tropical Dry Forest, Anant Deshwal, Steven L. Stephenson, Pooja Panwar, Brett A. Degregorio, Ragupathy Kannan, John D. Willson

United States Geological Survey: Staff Publications

Habitat loss due to increasing anthropogenic disturbance is the major driver for bird population declines across the globe. Within the Eastern Ghats of India, shrubland bird communities are threatened by shrinking of suitable habitats due to increased anthropogenic disturbance and climate change. The development of an effective habitat management strategy is hampered by the absence of data for this bird community. To address this knowledge gap, we examined foraging sites for 14 shrubland bird species, including three declining species, in three study areas representing the shrubland type of forest community in the Eastern Ghats. We recorded microhabitat features within an …

Speciation With Gene Flow In A Narrow Endemic West Virginia Cave Salamander (Gyrinophilus Subterraneus), Evan H. Campbell Grant, Kevin P. Mulder, Adrianne B. Brand, Douglas B. Chambers, Addison H. Wynn, Grace Capshaw, Matthew L. Niemiller, John G. Phillips, Jeremy F. Jacobs, Shawn R. Kuchta, Rayna C. Bell

United States Geological Survey: Staff Publications

Due to their limited geographic distributions and specialized ecologies, cave species are often highly endemic and can be especially vulnerable to habitat degradation within and surrounding the cave systems they inhabit. We investigated the evolutionary history of the West Virginia Spring Salamander (Gyrinophilus subterraneus), estimated the population trend from historic and current survey data, and assessed the current potential for water quality threats to the cave habitat. Our genomic data (mtDNA sequence and ddRADseq-derived SNPs) reveal two, distinct evolutionary lineages within General Davis Cave corresponding to G. subterraneus and its widely distributed sister species, Gyrinophilus porphyriticus, that …

Toxicological Responses To Sublethal Anticoagulant Rodenticide Exposure In Free‑Flying Hawks, Nimish B. Vyas, Barnett A. Rattner, J. Michael Lockhart, Craig S. Hulse, Clifford P. Rice, Frank Kuncir, Kevin Kritz

United States Geological Survey: Staff Publications

An important component of assessing the hazards of anticoagulant rodenticides to non-target wildlife is observations in exposed free-ranging individuals. The objective of this study was to determine whether environmentally realistic, sublethal first-generation anticoagulant rodenticide (FGAR) exposures via prey can result in direct or indirect adverse effects to free-flying raptors. We offered black-tailed prairie dogs (Cynomys ludovicianus) that had fed on Rozol® Prairie Dog Bait (Rozol, 0.005% active ingredient chlorophacinone, CPN) to six wild-caught red-tailed hawks (RTHA, Buteo jamaicensis), and also offered black-tailed prairie dogs that were not exposed to Rozol to another two wild-caught RTHAs for 7 …

Within‑Marsh And Landscape Features Structure Ribbed Mussel Distribution In Georgia, Usa, Marshes, William K. Annis, Elizabeth A. Hunter, John M. Carroll

United States Geological Survey: Staff Publications

Ribbed mussels, Geukensia demissa, are marsh fauna that are used in coastal management and restoration due to the ecosystem services they provide. Ribbed mussel restoration efforts may be improved with a greater understanding of the environmental drivers of ribbed mussel distribution at multiple spatial scales to predict areas where restoration could be successful. This study sought to estimate the effects of within-marsh (4 m) and landscape (500 m) factors on ribbed mussel distribution. Ribbed mussel densities were surveyed at 11 sites along the coast of Georgia, USA, and overlaid with spatial data for within-marsh factors (elevation, distance to marsh …

Influences Of Seasonality And Habitat Quality On Great Lakes Coastal Wetland Fish Community Composition And Diets, Sara N. Diller, Anna M. Harrison, Kurt P. Kowalski, Valerie J. Brady, Jan J. H. Ciborowski, Matthew J. Cooper, Joshua D. Dumke, Joseph P. Gathman, Carl R. Ruetz Iii, Donald G. Uzarski, Douglas A. Wilcox, Jeffrey S. Schaeffer

United States Geological Survey: Staff Publications

Great Lakes coastal wetlands (GLCW) have been severely degraded by anthropogenic activity over the last several decades despite their critical role in fish production. Many Great Lakes fish species use coastal wetland habitats for spawning, feeding, shelter, and nurseries throughout the year. The goal of our study was to compare GLCW fish community composition in the spring, summer, and fall months and investigate how water quality relates to fish diversity, the presence of functional groups, and juvenile fish diets. We summarized fish data collected from GLCW across the basin and used the coastal wetland monitoring program’s water quality-land use indicator …

A Critical Review Of Bioaccumulation And Biotransformation Of Organic Chemicals In Birds, Dave T. F. Kuo, Barnett A. Rattner, Sarah C. Marteinson, Robert Letcher, Kim J. Fernie, Gabriele Treu, Markus Deutsch, Mark S. Johnson, Sandrine Deglin, Michelle Embry

United States Geological Survey: Staff Publications

A literature review of bioaccumulation and biotransformation of organic chemicals in birds was undertaken, aiming to support scoping and prioritization of future research. The objectives were to characterize available bioaccumulation/ biotransformation data, identify knowledge gaps, determine how extant data can be used, and explore the strategy and steps forward. An intermediate approach balanced between expediency and rigor was taken given the vastness of the literature. Following a critical review of >500 peer-reviewed studies, >25,000 data entries and 2 million information bytes were compiled on >700 organic compounds for ~ 320 wild species and 60 domestic breeds of birds. These data …

Nutrient Restoration Of A Large, Impounded, Ultra-Oligotrophic Western River To Recover Declining Native Fishes, Ryan S. Hardy, Tyler J. Ross, Kevin N. Mcdonnell, Michael C. Quist, Charlie Holderman, Bryan S. Stevens

United States Geological Survey: Staff Publications

Declines in many fish populations in large, western rivers have been primarily attributed to the anthropogenic reduction of nutrient inputs and subsequent impacts to the food web. The largest known river fertilization program was implemented starting in 2005 on the Kootenai River in northern Idaho to restore resident fisheries. Annual electrofishing surveys were conducted at multiple sites in Idaho and Montana before and during nutrient addition to evaluate assemblage and population-level responses. Although few responses in fish assemblage structure were observed, the addition of liquid ammonium polyphosphate fertilizer (3 μg/L) to the Kootenai River increased fish abundance and biomass over …

A Step Toward Reconstructing Climate Variability Druing The Last Ice Age Cycle In The Northeast Pacific Region, Blaine Lynch-Gadaleta

Senior Honors Projects

This study is designed as a step toward reconstructing the climate variability in the Northeast Pacific during the last ice age cycle, including the glacial and deglacial transitions. Reconstruction may also contribute to the regional picture of climate change and potentially provide new insights into the pattern of variability in the Northeast Pacific. Deep-sea sediment core AT26-19 09PC was collected west of the Juan de Fuca Ridge in the Northeast Pacific Ocean. Samples were analyzed in 1 cm intervals, representing approximately 300-year resolution. The abundance of mineral grains, planktonic foraminifera, and the polar foraminifera N.pachyderma was quantified using split aliquots …

Air, Land, And Water Variables Associated With The First Appearance And Current Spatial Distribution Of Toxic Prymnesium Parvum Blooms In Reservoirs Of The Southern Great Plains, Usa, Shisbeth Tábora-Sarmiento, Reynaldo Patiño, Carlos Portillo-Quintero, Cade Coldren

United States Geological Survey: Staff Publications

This study examined the association of air, land, and water variables with the first historical occurrence and current distribution of toxic Prymnesium parvum blooms in reservoirs of the Brazos River and Colorado River, Texas (USA). One impacted and one reference reservoir were selected per basin. Land cover and use variables were estimated for the whole watershed (WW) and a 0.5-km zone on either side of streams (near field, NF). Variables were expressed in annual values. Principal component and trend analyses were used to determine (1) differences in environmental conditions before and after the 2001 onset of toxic blooms in impacted …

Spatial And Temporal Distribution And Habitat Selection Of Native Yellowstone Cutthroat Trout And Nonnative Utah Chub, Darcy K. Mccarrick, Jeffrey C. Dillon, Brett High, Michael C. Quist

United States Geological Survey: Staff Publications

Henrys Lake, Idaho, is a renowned trophy trout fishery that faces an uncertain future following the establishment of Utah Chub (UTC) Gila atraria. Utah Chub were first documented in the lake in 1993 and have become abundant over the past two decades. Little is known about the ecology of UTC, but they typically have negative effects on salmonids in systems where they have been introduced. We sought to fill knowledge gaps in UTC ecology and provide insight on potential interactions with Yellowstone Cutthroat Trout (YCT) Oncorhynchus clarkii bouvieri. Ninety-four YCT and 95 UTC were radio-tagged in spring 2019 …

Ignoring Species Availability Biases Occupancy Estimates In Single-Scale Occupancy Models, Graziella V. Direnzo, David A. W. Miller, Evan H. C. Grant

United States Geological Survey: Staff Publications

1. Most applications of single-scale occupancy models do not differentiate between availability and detectability, even though species availability is rarely equal to one. Species availability can be estimated using multi-scale occupancy models; however, for the practical application of multi-scale occupancy models, it can be unclear what a robust sampling design looks like and what the statistical properties of the multi-scale and single-scale occupancy models are when availability is less than one.
2. Using simulations, we explore the following common questions asked by ecologists during the design phase of a field study: (Q1) what is a robust sampling design for the multi-scale occupancy …

Informing Management Of Henrys Lake, Idaho, Using An Integrated Catch-At-Age Model, Joshua L. Mccormick, Jennifer Vincent, Brett High, Darcy K. Mccarrick, Michael C. Quist

United States Geological Survey: Staff Publications

Henrys Lake, Idaho, supports a popular fishery for Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri and Yellowstone Cutthroat Trout × Rainbow Trout O. mykiss hybrids. A majority of the adult population of fish in Henrys Lake are of hatchery origin that were stocked as fingerlings. The fishery is closed to angling during the late winter and spring months, but fisheries managers are considering opening the fishery year-round with catch-and-release- only regulations or with a two-fish bag limit during the extended season. However, there is concern that the proposed management actions may negatively affect the current fishery. Therefore, we developed an integrated …

New Hampshire Continental Shelf Geospatial Database: Surficial Geology Maps And Sediment Grain Size Data, Larry G. Ward, Zachary S. Mcavoy, Rachel C. Morrison

Data Catalog

The “New Hampshire Continental Shelf Geospatial Database: Surficial Geology Maps and Sediment Grain Size Data” consists of high-resolution surficial geology maps of the continental shelf off New Hampshire to Jeffreys Ledge in the Western Guff of Maine (WGOM) and supporting sediment grain size information. The surficial geology maps cover ~3,250 km² (Figure 1). The maps depict three different classifications based on the Coastal and Marine Ecological Classification Standards (CMECS; FGDC, 2012): Geoforms (major morphologic or physiographic features; Figure 2; Table 1), Geologic Substrate Subclass (Figure 3; Table 2), and Geologic Substrate Group (Figure 4; Table 2). The maps are …

Paradigm Versus Paradox On The Prairie: Testing Competing Stream Fish Movement Frameworks Using An Imperiled Great Plains Minnow, Zachary D. Steffensmeier, Maeghen Wedgeworth, Lauren Yancy, Noah Santee, Shannon K. Brewer, Joshuah S. Perkin

United States Geological Survey: Staff Publications

Background: Movement information can improve conservation of imperiled species, yet movement is not quantified for many organisms in need of conservation. Prairie chub (Macrhybopsis australis) is a regionally endemic freshwater fish with unquantified movement ecology and currently considered for listing under the Endangered Species Act. The purpose of this study was to test competing ecological theories for prairie chub movement, including the colonization cycle hypothesis (CCH) that posits adults must make upstream movements to compensate for downstream drift at early life stages, and the restricted movement paradigm (RMP) that describes populations as heterogeneous mixes of mostly stationary …

Fluids And Melts At The Magmatic-Hydrothermal Transition, Recorded By Unidirectional Solidification Textures At Saginaw Hill, Arizona, Usa, Wyatt M. Bain, Pilar Lecumberri-Sanchez, Erin E. Marsh, Matthew Steele-Macinnis

United States Geological Survey: Staff Publications

Fluid exsolution and melt evolution at the magmatic-hydrothermal transition are critical processes driving the metal enrichment of porphyry systems. Coeval fluid and melt inclusion assemblages in unidirectional solidification textures (USTs) at Saginaw Hill—a small, porphyry Cu system in southwestern Arizona—record a dynamic and repetitious process of fluid accumulation and release. The cores of quartz crystals throughout the UST bands host coeval silicate melt and brine inclusions but lack vapor-rich inclusions. This could indicate preferential expulsion of vapor and trapping of high-density brine during episodes of fracturing or the direct exsolution of single-phase high-salinity brine from the silicate melt. In contrast, …

Coastal Paleogeography Of The Pacific Northwest, Usa, For The Last 12,000 Years Accounting For Three-Dimensional Earth Structure, Jorie Clark, Jay R. Alder, Marisa Borreggine, Jerry X. Mitrovica, Konstantin Latychev

United States Geological Survey: Staff Publications

Predictive modeling of submerged archaeological sites requires accurate sea-level predictions in order to reconstruct coastal paleogeography and associated geographic features that may have influenced the locations of occupation sites such as rivers and embayments. Earlier reconstructions of the paleogeography of parts of the western U.S. coast used an assumption of eustatic sea level, but this neglects the large spatial variations in relative sea level (RSL) associated with glacial isostatic adjustment (GIA) and tectonics. Subsequent work using a one-dimensional (1-D) solid Earth model showed that reconstructions that accounted for GIA result in significant differences from those based on eustatic sea level. …

Coastal Paleogeography Of The Pacific Northwest, Usa, For The Last 12,000 Years Accounting For Three-Dimensional Earth Structure, Jorie Clark, Jay R. Alder, Marisa Borreggine, Jerry X. Mitrovica, Konstantin Latychev

United States Geological Survey: Staff Publications

Predictive modeling of submerged archaeological sites requires accurate sea-level predictions in order to reconstruct coastal paleogeography and associated geographic features that may have influenced the locations of occupation sites such as rivers and embayments. Earlier reconstructions of the paleogeography of parts of the western U.S. coast used an assumption of eustatic sea level, but this neglects the large spatial variations in relative sea level (RSL) associated with glacial isostatic adjustment (GIA) and tectonics. Subsequent work using a one-dimensional (1-D) solid Earth model showed that reconstructions that accounted for GIA result in significant differences from those based on eustatic sea level. …

Testing Xrf Identification Of Marine Washover Sediment Beds In A Coastal Lake In Southeastern Texas, Usa, Harry F. L. Williams, Chelsea E. Beaubouef, Kam-Biu Liu, Nicholas Culligan, Lance Riedlinger

Faculty Publications

This study tests the ability of a novel approach to identifying washover beds in coastal lakes. Combined X-Ray Fluorescence (XRF) and cluster analysis was used to identify hurricane washover beds in sediment cores from Clam Lake on the McFaddin National Wildlife Refuge in southeastern Texas. The lake is known to contain washover beds from recent hurricanes, but the washover sediment has similar microfossil, loss-on-ignition and textural characteristics to non-washover sediment and is not readily distinguishable. Sediment cores taken from marshes surrounding the lake do contain visually-recognizable sandy washover beds of Hurricanes Ike, Rita, Carla and Audrey. XRF analysis of these …

Mis 5e Sea-Level History Along The Pacific Coast Of North America, Daniel R. Muhs

United States Geological Survey: Staff Publications

The primary last interglacial, marine isotope substage (MIS) 5e records on the Pacific coast of North America, from Washington (USA) to Baja California Sur (Mexico), are found in the deposits of erosional marine terraces. Warmer coasts along the southern Golfo de California host both erosional marine terraces and constructional coral reef terraces. Because the northern part of the region is tectonically active, MIS 5e terrace elevations vary considerably, from a few meters above sea level to as much as 70m above sea level. The primary paleo-sea-level indicator is the shoreline angle, the junction of the wave-cut platform with the former …

Analysis Of Titan's Fluvial Features Using Numerical Modeling, Jeshurun Horton

Mechanical Engineering Undergraduate Honors Theses

River channels have been observed near the Huygens probe landing site on the surface of Titan, along with evidence of rounded water ice boulders transported through fluid flow. Evidence near the landing site suggests active flow of liquid methane, which has motivated the study of the effects of sediment load and channel sizes on Titan’s fluvial features. A numerical model is used to determine the viscosity, flow velocity, and critical boulder transport diameter based on channel size, slope, and a range of sediment concentrations. This model achieves two ends: first, observed boulder diameters are used to determine the ideal channel …

Interspecific And Local Variation In Tern Chick Diets Across Nesting Colonies In The Gulf Of Maine, Keenan Yakola, Adrian Jordaan, Stephen Kress, Paula Shannon, Michelle D. Staudinger

United States Geological Survey: Staff Publications

The Gulf of Maine, USA is home to four colonial co-nesting tern species: Least Tern (Sternula antillarum), Common Tern (Sterna hirundo), Arctic Tern (Sterna paradisaea), and the federally endangered Roseate Tern (Sterna dougallii). Over three decades of visual observations of chick provisioning were compiled for a comparative dietary study in the region, including the first detailed descriptions of Least and Roseate Tern chick diets. Three prey groups comprised the majority of chick diets among tern species between 1986–2017: hake (Urophycis spp. or Enchelyopus cimbrius) 28–37% frequency of occurrence (FO), sand lance …

Exposure Of Predatory And Scavenging Birds To Anticoagulant Rodenticides In France: Exploration Of Data From French Surveillance Programs, Meg-Anne Moriceau, Sébastien Lefebvre, Isabelle Fourel, Etienne Benoit, Florence Buronfosse-Roque, Pascal Orabi, Barnett A. Rattner, Virginie Lattard

United States Geological Survey: Staff Publications

Wild raptors are widely used to assess exposure to different environmental contaminants, including anticoagulant rodenticides (ARs). ARs are used on a global scale for rodent control, and act by disruption of the vitamin K cycle that results in haemorrhage usually accompanied by death within days. Some ARs are highly persistent and bioaccumulative, which can cause significant exposure of non-target species.We characterized AR exposure in a heterogeneous sample of dead raptors collected over 12 years (2008–2019) in south-eastern France. Residue analysis of 156 liver samples through LC-MS/MS revealed that 50% (78/156) were positive for ARs, with 13.5% (21/156) having summed second-generation …

Continuous Color Model As A Tool To Improve Speleothem Age Model Development, Celia Campa-Bousoño, Ángel García-Pérez, Ana Moreno, Miguel Iglesias, Hai Cheng, R Lawrence Edwards, Heather Stoll

International Journal of Speleology

Because they can archive a variety of geochemical proxies and be precisely and accurately dated with the U-Th decay series chronometer, stalagmites are widely used for paleoclimate reconstructions. However, limitations in the use of this chronometer arise because U-Th dating is analytically time consuming, expensive, and requires a relatively large sample size. These limitations restrict the number of absolute dates usually obtained, which can result in significant uncertainties in the age model and inhibit the ability to archive high resolution records of environmental variability, particularly in those stalagmites where there are variations in growth rate not constrained by U-Th dates. …

Novel Application Of 210po-210pb Disequilibria To Date Snow, Melt Pond, Ice Core, And Ice-Rafted Sediments In The Arctic Ocean, Mark Baskaran, Katherine Krupp, Mark Baskaran

Environmental Science and Geology Faculty Research Publications

We collected surface ocean water, snow, grab ice, ice core, melt pond and ice-rafted sediment (IRS) from 5 ice stations during the Western Arctic US GEOTRACES cruise (USGCG Healy; August 10 – October 7, 2015) and analyzed for 210Po (T1/2 = 138.4 days) and 210Pb (T1/2 = 22.3 years) in dissolved and particulate phases (snow, grab ice, ice core, surface seawater) to investigate the 210Po:210Pb disequilibria in these matrices. Thirteen aerosol samples, using a large-volume aerosol sampler (PM10), from Dutch Harbor, AK to North Pole, were also collected and analyzed for 210Po/210Pb to quantify the atmospheric depositional input to the …

210po And 210pb As Tracers Of Particle Cycling And Export In The Western Arctic Ocean, Wokil Bam, Kanchan Maiti

Environmental Science and Geology Faculty Research Publications

The distribution and vertical fluxes of particulate organic carbon and other key elements in the Arctic Ocean are primarily governed by the spatial and seasonal changes in primary productivity, areal extent of ice cover, and lateral exchange between the shelves and interior basins. The Arctic Ocean has undergone rapid increase in primary productivity and drastic decrease in the areal extent of seasonal sea ice in the last two decades. These changes can greatly influence the biological pump as well as associated carbon export and key element fluxes. Here, we report the export of particulate organic and inorganic carbon, particulate nitrogen …

Past Ice-Ocean Interactions On The Sabrina Coast Shelf, East Antarctica: Deglacial To Recent Paleoenvironmental Insights From Marine Sediments, Kara J. Vadman

USF Tampa Graduate Theses and Dissertations

The East Antarctic Ice Sheet (EAIS) contains ~53 meters of sea level equivalent (SLE) ice, and observations suggest it is sensitive to ongoing and past climate change. The EAIS has traditionally been considered insensitive to climate perturbations because it is largely grounded above sea level. However, aerogeophysical surveys, oceanographic observations, and models indicate that large areas of the EAIS are grounded below sea level and contain 19.2 m SLE. Marine-based parts of the EAIS are thought to be located on inland-sloping beds that drain through marine terminating outlet glaciers, indicating large areas of the EAIS may be more sensitive to …

Linking Human Activities To Water Quality In Coastal New England: Past And Present, Amelia Hurst

University Scholar Projects

This project examines the timing and effect of direct and indirect anthropogenic and natural influences on the marine environment in embayments in southern New England over the past decades to century timescale. We investigated the effects of human land use from colonial through post-industrial times, determined baseline conditions and natural climatic variability, and analyzed the response of marine ecosystems to specific local management actions aimed to improve water quality. A coastal sediment core was taken in Mumford Cove, CT and was analyzed downcore for eutrophication markers (C: N, %C, %N, d¹⁵N, d¹³C) and metals (Hg, Pb, …

Small-Scale Resuspension And Redistribution Of Surface Sediments In The Northeast Gulf Of Mexico, Austin Harris

Master's Theses

Following the release of ~4.9 million barrels of oil into the Gulf of Mexico from the Macondo wellhead, a vast area of the seafloor contained recently deposited marine sediments contaminated by the oil spill. The initial deposition of these contaminated marine sediments was likely not the end of the journey for the particles. Downslope gravitational processes and events of increased current speed in the deep ocean setting can result in recently deposited sediments to resuspend and be moved laterally with the current flow, increasing the area effected by the oil spill. Erosion experiments performed in a closed-loop resuspension flume were …

Diversity – Independent Factors Predict Elevated Extinction Rates, Dustin Perriguey, Corinne Myers, Jason Moore, Louis Scuderi

Earth and Planetary Sciences ETDs

Multiple linear regression was used to determine the relationships between diversity-independent factors (i.e., abiotic, climatic) 2, 5, and 10 Myrs-prior to the most elevated Phanerozoic extinctions. We constructed five abiotic variables from Phanerozoic proxy records1–5 to compare to extinction rates: mean temperature, temperature instability, carbon cycle instability, continental weathering rates, and habitat instability. All three models were statistically significant (P < 0.05) and explained > 70% of the variation in Alroy’s6 three-timer generic extinction rates. However, the 2 Myr-prior model explained the most variance in extinction rates and had the most predictive power, based on adjusted and predictive R2 (~ 72% and 41%, respectively). Carbon …