Algebraic Geometry Commons^™

Model Selection And Experimental Design Of Biological Networks With Algebraic Geometry, Anyu Zhang

Mathematics Theses and Dissertations

Model selection based on experimental data is an essential challenge in biological data science. In decades, the volume of biological data from varied sources, including laboratory experiments, field observations, and patient health records has seen an unprecedented increase. Mainly when collecting data is expensive or time-consuming, as it is often in the case with clinical trials and biomolecular experiments, the problem of selecting information-rich data becomes crucial for creating relevant models.

Motivated by certain geometric relationships between data, we partitioned input data sets, especially data sets that correspond to a unique basis, into equivalence classes with the same basis to …

Algebraic Methods For Proving Geometric Theorems, Lynn Redman

Electronic Theses, Projects, and Dissertations

Algebraic geometry is the study of systems of polynomial equations in one or more variables. Thinking of polynomials as functions reveals a close connection between affine varieties, which are geometric structures, and ideals, which are algebraic objects. An affine variety is a collection of tuples that represents the solutions to a system of equations. An ideal is a special subset of a ring and is what provides the tools to prove geometric theorems algebraically. In this thesis, we establish that a variety depends on the ideal generated by its defining equations. The ability to change the basis of an ideal …

Local And Global Color Symmetries Of A Symmetrical Pattern, Ma. Louise Antonette N. De Las Peñas, Agatha Kristel Abila, Eduard C. Taganap

Mathematics Faculty Publications

This study addresses the problem of arriving at transitive perfect colorings of a symmetrical pattern P consisting of disjoint congruent symmetric motifs. The pattern P has local symmetries that are not necessarily contained in its global symmetry group G. The usual approach in color symmetry theory is to arrive at perfect colorings of P ignoring local symmetries and considering only elements of G. A framework is presented to systematically arrive at what Roth [Geom. Dedicata (1984), 17, 99–108] defined as a coordinated coloring of P, a coloring that is perfect and transitive under G, satisfying the condition that the coloring …

Effective Statistical Energy Function Based Protein Un/Structure Prediction, Avdesh Mishra

LSU New Orleans Theses and Dissertations

Proteins are an important component of living organisms, composed of one or more polypeptide chains, each containing hundreds or even thousands of amino acids of 20 standard types. The structure of a protein from the sequence determines crucial functions of proteins such as initiating metabolic reactions, DNA replication, cell signaling, and transporting molecules. In the past, proteins were considered to always have a well-defined stable shape (structured proteins), however, it has recently been shown that there exist intrinsically disordered proteins (IDPs), which lack a fixed or ordered 3D structure, have dynamic characteristics and therefore, exist in multiple states. Based on …

Topology And Dynamics Of Gene Regulatory Networks: A Meta-Analysis, Claus Kadelka

Biology and Medicine Through Mathematics Conference

No abstract provided.

Unifications Of Pythagorean Triple Schema, Emily Hammes

Undergraduate Honors Theses

Euclid’s Method of finding Pythagorean triples is a commonly accepted and applied technique. This study focuses on a myriad of other methods behind finding such Pythagorean triples. Specifically, we discover whether or not other ways of finding triples are special cases of Euclid’s Method.

On The Complexity Of Computing Galois Groups Of Differential Equations, Mengxiao Sun

Dissertations, Theses, and Capstone Projects

The differential Galois group is an analogue for a linear differential equation of the classical Galois group for a polynomial equation. An important application of the differential Galois group is that a linear differential equation can be solved by integrals, exponentials and algebraic functions if and only if the connected component of its differential Galois group is solvable. Computing the differential Galois groups would help us determine the existence of the solutions expressed in terms of elementary functions (integrals, exponentials and algebraic functions) and understand the algebraic relations among the solutions.

Hrushovski first proposed an algorithm for computing the differential …

Data Parsing For Optimized Molecular Geometry Calculations, Luke Rens

Undergraduate Research Conference

The purpose of this project is to optimize and streamline to process of using ADF and ReaxFF. There is no efficient way to effectively add constraints to a compound and run it through ADF, take the ADF output and create a file that can be run through Reaxff, then take that Reaxff output and come to conclusions on it. To streamline this process, scripts were developed using Python to parse information out of data generated by ADF.

Dense Geometry Of Music And Visual Arts: Vanishing Points, Continuous Tonnetz, And Theremin Performance, Maria Mannone, Irene Iaccarino, Rosanna Iembo

The Transdisciplinary STEAM+ Journal

The dualism between continuous and discrete is relevant in music theory as well as in performance practice of musical instruments. Geometry has been used since longtime to represent relationships between notes and chords in tonal system. Moreover, in the field of mathematics itself, it has been shown that the continuity of real numbers can arise from geometrical observations and reasoning. Here, we consider a geometrical approach to generalize representations used in music theory introducing continuous pitch. Such a theoretical framework can be applied to instrument playing where continuous pitch can be naturally performed. Geometry and visual representations of concepts of …

Radiation Effect On Mixed Convection Flow Of Nanofluid Between Two Concentric Cylinders With Hall And Ion-Slip Effects, Md. Shafeeurrahman, D. Srinivasacharya

Applications and Applied Mathematics: An International Journal (AAM)

This paper analyzes the effects of thermal radiation, Hall and ion slip parameter on mixed convective nanofluid flow in an annuli between two concentric cylinders in the existence of strong magnetic field. The nonlinear governing equations are non-dimensionalized and then solved by using homotopy analysis method. The influence of radiation, magnetic, Hall and ion slip parameters on the velocity, temperature, nanoparticle concentration, Nusselt number and nanoparticle Sherwood number are investigated and represented graphically.

Squared Distance Matrix Of A Weighted Tree, Ravindra B. Bapat

Journal Articles

Let T be a tree with vertex set f1;: :: ; ng such that each edge is assigned a nonzero weight. The squared distance matrix of T; denoted by is the n n matrix with (i; j)-element d(i; j)2; where d(i; j) is the sum of the weights of the edges on the (ij)-path. We obtain a formula for the determinant of A formula for 1 is also obtained, under certain conditions. The results generalize known formulas for the unweighted case.

Graded Quivers And B-Branes At Calabi-Yau Singularities, Cyril Closset, Sebastían Franco, Jirui Guo, Azeem Hasan

Publications and Research

A graded quiver with superpotential is a quiver whose arrows are assigned degrees c ∈ {0, 1, · · · , m}, for some integer m ≥ 0, with relations generated by a superpotential of degree m − 1. Ordinary quivers (m = 1) often describe the open string sector of D-brane systems; in particular, they capture the physics of D3-branes at local Calabi-Yau (CY) 3-fold singularities in type IIB string theory, in the guise of 4d N = 1 supersymmetric quiver gauge theories. It was pointed out recently that graded quivers with m = 2 and m …

Taking A Canon To The Adjunction Formula, Paul M. Harrelson

College of Graduate Studies: Theses & Dissertations

In this paper, we show how the canonical divisor of a graph is related to the canonical divisor of its subgraph. The use of chip firing and the adjunction formula for graphs ex- plains said relation and even completes it. We go on to show the difference between the formula for full subgraphs and that of non-full subgraphs. Examples are used to simplify these results and to see the adjunction formula in action. Finally, we show that though the adjunction formula seems simple at first glance, it is somewhat complex and rather useful.