Systems Architecture Commons^™

Development Of Feature Extraction Models To Improve Image Analysis Applications In Cancer, Yu Shi

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Cancer poses a significant global health challenge. With an estimated 20 million new cases diagnosed worldwide in 2022 and 9.7 million fatalities attributable to the disease, the economic burden of cancer is immense. It impacts healthcare systems and imposes substantial costs for its care on patients and their families. Despite advancements in early detection, prevention, and treatment that have reduced overall cancer mortality rates, the growing prevalence of cancer, particularly among younger individuals, remains a pressing issue.

Recent advancements in medical imaging technology have progressed significantly with the help of emerging computer vision and artificial intelligence (AI) technology. Despite these …

Big Data Investment And Knowledge Integration In Academic Libraries, Saher Manaseer, Afnan R. Alawneh, Dua Asoudi

Copyright, Fair Use, Scholarly Communication, etc.

Recently, big data investment has become important for organizations, especially with the fast growth of data following the huge expansion in the usage of social media applications, and websites. Many organizations depend on extracting and reaching the needed reports and statistics. As the investments on big data and its storage have become major challenges for organizations, many technologies and methods have been developed to tackle those challenges.

One of such technologies is Hadoop, a framework that is used to divide big data into packages and distribute those packages through nodes to be processed, consuming less cost than the traditional storage …

Design And Implementation Of A Stand-Alone Tool For Metabolic Simulations, Milad Ghiasi Rad

School of Computing: Dissertations, Theses, and Student Research

In this thesis, we present the design and implementation of a stand-alone tool for metabolic simulations. This system is able to integrate custom-built SBML models along with external user’s input information and produces the estimation of any reactants participating in the chain of the reactions in the provided model, e.g., ATP, Glucose, Insulin, for the given duration using numerical analysis and simulations. This tool offers the food intake arguments in the calculations to consider the personalized metabolic characteristics in the simulations. The tool has also been generalized to take into consideration of temporal genomic information and be flexible for simulation …

Enabling Distributed Scientific Computing On The Campus, Derek J. Weitzel

School of Computing: Dissertations, Theses, and Student Research

Campus research computing has evolved from many small decentralized resources, such as individual desktops, to fewer, larger centralized resources, such as clusters. This change has been necessitated by the increasing size of researcher's workloads, but this change has harmed the researcher's user experience. We propose to improve the user experience on the computational resources by creating an overlay cluster they are able to control. This overlay should transparently scale to national cyberinfrastructure as the user's demands increase.

We explore methods for improving the user experience when submitting jobs on a campus grid. To this end, we created a remote submission …

Boscor: Extending R From The Desktop To The Grid, Derek J. Weitzel, Jaime Frey, Marco Mambelli, Dan Fraser, Miha Ahronovitz, David Swanson

Holland Computing Center: Faculty Publications

In this paper, we describe a framework to execute R functions on remote resources from the desktop using Bosco. The R language is attractive to researchers because of its high level programming constructs which lower the barrier of entry for use. As the use of the R programming language in HPC and High Throughput Computing (HTC) has grown, so too has the need for parallel libraries in order to utilize computing resources.

Bosco is middleware that uses common protocols to manage job submissions to a variety of remote computational platforms and resources. The researcher is able to control and monitor …

Power Management In The Cluster System, Leping Wang

School of Computing: Dissertations, Theses, and Student Research

With growing cost of electricity, the power management of server clusters has become an important problem. However, most previous researchers have only addressed the challenge in traditional homogeneous environments. Considering the increasing popularity of heterogeneous and virtualized systems, this thesis develops a series of efficient algorithms respectively for power management of heterogeneous soft real-time clusters and a virtualized cluster system. It is built on simple but effective mathematical models. When deployed to a new platform, the software incurs low configuration cost because no extensive performance measurements and profiling are required. Built upon optimization, queuing theory and control theory techniques, our …

Providing Flexible File-Level Data Filtering For Big Data Analytics, Lei Xu, Ziling Huang, Hong Jiang, Lei Tian, David Swanson

School of Computing: Technical Reports

The enormous amount of big data datasets impose the needs for effective data filtering technique to accelerate the analytics process. We propose a Versatile Searchable File System, VSFS, which provides a transparent, flexible and near real-time file-level data filtering service by searching files directly through the file system. Therefore, big data analytics applications can transparently utilize this filtering service without application modifications. A versatile index scheme is designed to adapt to the exploratory and ad-hoc nature of the big data analytics activities. Moreover, VSFS uses a RAM-based distributed architecture to perform file indexing. The evaluations driven by three real-world analytics …

Vsfs: A Versatile Searchable File System For Hpc Analytics, Lei Xu, Ziling Huang, Hong Jiang, Lei Tian, David Swanson

School of Computing: Technical Reports

Big-data/HPC analytics applications have urgent needs for file-search services to drastically reduce the scale of the input data to accelerate analytics. Unfortunately, the existing solutions either are poorly scalable for large-scale systems, or lack well-integrated interface to allow applications to easily use them. We propose a distributed searchable file system, VSFS, which provide a novel and flexible POSIX-compatible searchable file system namespace that can be seamlessly integrate with any legacy code without modification. Additionally, to provide real-time indexing and searching performance, VSFS uses DRAM-based distributed consistent hashing ring to manages all file-index. The results of our evaluation show that VSFS …

Hog: Distributed Hadoop Mapreduce On The Grid, Chen He, Derek J. Weitzel, David Swanson, Ying Lu

School of Computing: Conference and Workshop Papers

MapReduce is a powerful data processing platform for commercial and academic applications. In this paper, we build a novel Hadoop MapReduce framework executed on the Open Science Grid which spans multiple institutions across the United States – Hadoop On the Grid (HOG). It is different from previous MapReduce platforms that run on dedicated environments like clusters or clouds. HOG provides a free, elastic, and dynamic MapReduce environment on the opportunistic resources of the grid. In HOG, we improve Hadoop’s fault tolerance for wide area data analysis by mapping data centers across the U.S. to virtual racks and creating multi-institution failure …

A Multi-Modal Sensing And Communication Platform For Continental-Scale Migratory Bird Tracking, David J. Anthony

Department of Computer Electronics and Engineering: Dissertations, Theses, and Student Research

This thesis presents a novel platform for tracking migratory birds on a continental scale. Cellular technology is used to augment the short-range radios that have traditionally been used in wireless sensor networks. The platform utilizes multiple sensors, including a GPS and solid state compass. By using these sensors, the platform is capable of not only tracking a bird’s migration path, but also provides information on a bird’s behavior during its life-cycle. Testing methodology utilizing simulations and aspect-oriented programming is used to reveal faults in the platform prior to deployment on wild animals. In collaboration with the International Crane Foundation, and …

Dsfs: Decentralized Security For Large Parallel File Systems, Zhongying Niu, Hong Jiang, Ke Zhou, Dan Feng, Tianming Yang, Dongliang Lei, Anli Chen

School of Computing: Technical Reports

This paper describes DSFS, a decentralized security system for large parallel file system. DSFS stores global access control lists (ACLs) in a centralized decisionmaking server and pushes pre-authorization lists (PALs) into storage devices. Thus DSFS allows users to flexibly set any access control policy for the global ACL or even change the global ACL system without having to upgrade the security code in their storage devices. With pre-authorization lists, DSFS enables a networkattached storage device to immediately authorize I/O, instead of demanding a client to acquire an authorization from a centralized authorization server at a crucial time. The client needs …