Other Computer Sciences Commons^™

Phase-Preserving Machine Learning Forecasting Of Nonlinear Predator–Prey Dynamics, Saira Batool, Muhammad Imran, Brett Mckinney

Biology and Medicine Through Mathematics Conference

No abstract provided.

Computing In The Commonwealth: Specialized Education In Computer Science And Information Technology For High School Students In Virginia – An Environmental Scan, Amy Corning, Jonathan D. Becker, Jon Graham, James Carrigan, Keisha Tennessee

ICRE Publications

Over the past two decades, Virginia has invested substantially in STEM education, in part through specialized programs focused on computer science and information technology (CS/IT). This study represents the first effort to identify Virginia’s specialized secondary CS/IT programs and examine them collectively. Findings from the statewide environmental scan indicate that the programs are delivered through a wide variety of institutional structures, including Governor’s STEM Academies, Governor’s Schools, specialty centers, and academies, but most often through Career and Technical Education (CTE) centers. Programs tend to be concentrated in metropolitan areas, and some rural divisions may not be served. The programs provide …

Multitask Learning For Named Entity Recognition And Relationship Extraction, Adrienne D. Hembrick

Theses and Dissertations

Information Extraction (IE) is a fundamental task in Natural Language Processing (NLP), involving the identification of structured information from unstructured text. Two core components of IE—Named Entity Recognition (NER) and Relation Extraction (RE)—are widely used to extract key concepts and the relationships between them across various domains. However, the sequential dependency of RE on the output of NER makes it vulnerable to error propagation: inaccuracies in entity recognition can negatively affect downstream relation extraction.

To mitigate this issue, Multitask Learning (MTL) has been proposed as an approach that jointly models NER and RE, aiming to improve overall performance and reduce …

Stealthy Control Logic Attacks And Defense In Industrial Control Systems, Adeen Ayub

Theses and Dissertations

Industrial control systems (ICS) play a crucial role in monitoring and managing critical infrastructure, including nuclear plants, oil and gas pipelines, and power grid stations. Programmable logic controllers (PLCs) are a fundamental component of ICS, directly interfacing with physical processes and implementing control logic programs that govern operations. Due to their significance in controlling critical infrastructure, PLCs often become prime targets for attackers seeking to disrupt these systems. Exploitable vulnerabilities in PLCs render them susceptible to such attacks. While many attacks on PLCs leave a large footprint in network traffic and are detectable by intrusion detection systems (IDS), this dissertation …

Adaptable And Trustworthy Machine Learning For Human Activity Recognition From Bioelectric Signals, Morgan S. Stuart

Theses and Dissertations

Enabling machines to learn measures of human activity from bioelectric signals has many applications in human-machine interaction and healthcare. However, labeled activity recognition datasets are costly to collect and highly varied, which challenges machine learning techniques that rely on large datasets. Furthermore, activity recognition in practice needs to account for user trust - models are motivated to enable interpretability, usability, and information privacy. The objective of this dissertation is to improve adaptability and trustworthiness of machine learning models for human activity recognition from bioelectric signals. We improve adaptability by developing pretraining techniques that initialize models for later specialization to unseen …

Material Extrusion-Based Additive Manufacturing: G-Code And Firmware Attacks And Defense Frameworks, Haris Rais

Theses and Dissertations

Additive Manufacturing (AM) refers to a group of manufacturing processes that create physical objects by sequentially depositing thin layers. AM enables highly customized production with minimal material wastage, rapid and inexpensive prototyping, and the production of complex assemblies as single parts in smaller production facilities. These features make AM an essential component of Industry 4.0 or Smart Manufacturing. It is now used to print functional components for aircraft, rocket engines, automobiles, medical implants, and more. However, the increased popularity of AM also raises concerns about cybersecurity. Researchers have demonstrated strength degradation attacks on printed objects by injecting cavities in the …

Pseudo-Data Generation For Improving Clinical Named Entity Recognition, Jeffrey T. Smith

Theses and Dissertations

One of the primary challenges for clinical Named Entity Recognition (NER) is the availability of annotated training data. Technical and legal hurdles prevent the creation and release of corpora related to electronic health records (EHRs). In this work, we look at the imapct of pseudo-data generation on clinical NER using gazetteering and thresholding utilizing a neural network model. We report that gazetteers can result in the inclusion of proper terms with the exclusion of determiners and pronouns in preceding and middle positions. Gazetteers that had higher numbers of terms inclusive to the original dataset had a higher impact. We also …

Sparsity And Weak Supervision In Quantum Machine Learning, Seyran Saeedi

Theses and Dissertations

Quantum computing is an interdisciplinary field at the intersection of computer science, mathematics, and physics that studies information processing tasks on a quantum computer. A quantum computer is a device whose operations are governed by the laws of quantum mechanics. As building quantum computers is nearing the era of commercialization and quantum supremacy, it is essential to think of potential applications that we might benefit from. Among many applications of quantum computation, one of the emerging fields is quantum machine learning. We focus on predictive models for binary classification and variants of Support Vector Machines that we expect to be …

Indirect Relatedness, Evaluation, And Visualization For Literature Based Discovery, Sam Henry

Theses and Dissertations

The exponential growth of scientific literature is creating an increased need for systems to process and assimilate knowledge contained within text. Literature Based Discovery (LBD) is a well established field that seeks to synthesize new knowledge from existing literature, but it has remained primarily in the theoretical realm rather than in real-world application. This lack of real-world adoption is due in part to the difficulty of LBD, but also due to several solvable problems present in LBD today. Of these problems, the ones in most critical need of improvement are: (1) the over-generation of knowledge by LBD systems, (2) a …

Chrono: A System For Normalizing Temporal Expressions, Amy L. Olex, Luke G. Maffey, Nicholas Morton, Bridget T. Mcinnes

Computer Science Publications

The Chrono System: Chrono is a hybrid rule-based and machine learning system written in Python and built from the ground up to identify temporal expressions in text and normalizes them into the SCATE schema. Input text is preprocessed using Python’s NLTK package, and is run through each of the four primary modules highlighted here. Note that Chrono does not remove stopwords because they add temporal information and context, and Chrono does not tokenize sentences. Output is an Anafora XML file with annotated SCATE entities. After minor parsing logic adjustments, Chrono has emerged as the top performing system for SemEval 2018 …

Novel Support Vector Machines For Diverse Learning Paradigms, Gabriella A. Melki

Theses and Dissertations

This dissertation introduces novel support vector machines (SVM) for the following traditional and non-traditional learning paradigms: Online classification, Multi-Target Regression, Multiple-Instance classification, and Data Stream classification.

Three multi-target support vector regression (SVR) models are first presented. The first involves building independent, single-target SVR models for each target. The second builds an ensemble of randomly chained models using the first single-target method as a base model. The third calculates the targets' correlations and forms a maximum correlation chain, which is used to build a single chained SVR model, improving the model's prediction performance, while reducing computational complexity.

Under the multi-instance paradigm, …

Parsing Metamap Files In Hadoop, Amy Olex, Alberto Cano, Bridget T. Mcinnes

Computer Science Publications

The UMLS::Association CUICollector module identifies UMLS Concept Unique Identifier bigrams and their frequencies in a biomedical text corpus. CUICollector was re-implemented in Hadoop MapReduce to improve algorithm speed, flexibility, and scalability. Evaluation of the Hadoop implementation compared to the serial module produced equivalent results and achieved a 28x speedup on a single-node Hadoop system.

Network Analytics For The Mirna Regulome And Mirna-Disease Interactions, Joseph Jayakar Nalluri

Theses and Dissertations

miRNAs are non-coding RNAs of approx. 22 nucleotides in length that inhibit gene expression at the post-transcriptional level. By virtue of this gene regulation mechanism, miRNAs play a critical role in several biological processes and patho-physiological conditions, including cancers. miRNA behavior is a result of a multi-level complex interaction network involving miRNA-mRNA, TF-miRNA-gene, and miRNA-chemical interactions; hence the precise patterns through which a miRNA regulates a certain disease(s) are still elusive. Herein, I have developed an integrative genomics methods/pipeline to (i) build a miRNA regulomics and data analytics repository, (ii) create/model these interactions into networks and use optimization techniques, motif …

Big Data Visualization Platform For Mixed Reality, Aliakbar Panahi

Theses and Dissertations

The visualization of data helps to provide faster and deeper insight into the data. In this work, a system for visualizing and analyzing big data in an interactive mixed reality environment is proposed. Such a system can be used for representing different types of data such as temporal, geospatial, network graph, and high dimensional. Also, an implementation of this system for four different data types are created. The data types include network data, volumetric data, high dimensional, and spectral data for different mixed reality devices such as Microsoft HoloLens, Oculus Rift, Samsung Gear VR, and Android ARCore were created. It …

Umls::Association - Measuring The Association Between Biomedical Terms, Keith B. Herbert

Undergraduate Research Posters

UMLS::Association - A Semantic Association Framework for Biomedical Texts

Keith Herbert

Natural Language Processing Lab, Department of Computer Science

Introduction

We present UMLS::Association, a software package to explore the semantic association of biomedical terms with applications for literature-based discovery. Literature-based discovery is an endeavour to ”connect the dots” for scientists between the topics of their research and those of unexpected relevance. However, many approaches rely on the exact wording for the ideas in the research papers being analyzed. The Unified Medical Language System (UMLS) provides a way to map natural language phrases in these papers to sequences of abstract yet …

Evaluation Of Tcp Header Fields For Data Overhead Efficiency, Justin K. Yirka

Undergraduate Research Posters

Bandwidth across the internet is constricted by monetary factors and hardware development, so researchers are left to improve the efficiency of data transmitted in order to improve internet speeds. The transmission control protocol (TCP) is the primary transport protocol on the modern internet, ensuring reliable delivery of the majority of data transmitted. I evaluated the TCP header fields for efficient use of data overhead so as to determine current waste and to suggest possible areas for revision. I examined original specifications for TCP mechanisms, comparing them to modern implementations as determined by updated standards and modern practices in the networking …

R Code To Accompany “Principal Component Analysis And Optimization: A Tutorial”, Robert Reris, J. Paul Brooks

Statistical Sciences and Operations Research Data

This data accompanies "Principal Component Analysis and Optimization: A Tutorial" by Robert Reris and J. Paul Brooks, presented at the 2015 INFORMS Computing Society Conference, Operations Research and Computing: Algorithms and Software for Analytics, Richmond, Virginia January 11-13, 2015.

The data contains R code, output, and comments that follow the examples for principal component analysis in the paper.

Data Files To Accompany "The Support Vector Machine And Mixed Integer Linear Programming: Ramp Loss Svm With L1-Norm Regularization", Eric J. Hess, J. Paul Brooks

Statistical Sciences and Operations Research Data

These files accompany, "The Support Vector Machine and Mixed Integer Linear Programming: Ramp Loss SVM with L1-Norm Regularization" by Eric J. Hess and J. Paul Brooks, presented at the 2015 INFORMS Computing Society Conference, Operations Research and Computing: Algorithms and Software for Analytics, Richmond, Virginia January 11-13, 2015.

The files contain instances of optimization problems that are described in the paper and for which results are reported. The files are in CPLEX LP format. The naming convention of the files is as follows: ndBTj0F.lp, where is the number of samples, is the number of attributes, and refers to …

Mobile Indoor Positioning For Augmented Reality Systems, Robert B. Glass

Theses and Dissertations

This thesis explores the creation and setup of a prototype that allows users of the device to interact within an indoor real world environment and a virtual environment simultaneously using high-tech common technology. The prototype is comprised of a small mobile device such as a cellular mobile phone, Raspberry Pi computer, a battery powered handheld Pico projector, and software developed for the Android OS. The software can easily be ported to other mobile and non-mobile operating systems. The mobile device must contain accelerometer, magnetometer, and gyroscope embedded sensors as well as 802.11 wireless network chip. The prototype software implements an …