OS and Networks Commons^™

Traveling The Semantic Web Through Space, Time, And Theme, Amit P. Sheth, Matthew Perry

Kno.e.sis Publications

In this installment of Semantics and Services, we further develop the idea of spatial, temporal, and thematic (STT) processing of semantic Web data and describe the Web infrastructure needed to support it. Starting from Ramesh Jain's vision of the EventWeb as a view of what's possible with a Web that better accommodates all three dimensions of event-related information (thematic, spatial, and temporal), we outline the architecture needed to support it and current research that aims to realize it.

Semantic Sensor Web, Amit P. Sheth, Cory Andrew Henson

Kno.e.sis Publications

No abstract provided.

Semantics And Services Enabled Problem Solving Environment For Trypanosoma Cruzi, Amit P. Sheth, Rick L. Tarleton, Mark Musen, Satya S. Sahoo, Prashant Doshi, Natasha Noy

Kno.e.sis Publications

No abstract provided.

Semantic Sensor Web, Cory Andrew Henson

Kno.e.sis Publications

No abstract provided.

Ontology Driven Semantic Provenance For Heterogeneous Bionomics Experimental Data, Satya S. Sahoo, Michael L. Raymer, Cory Andrew Henson, Amit P. Sheth, William S. York

Kno.e.sis Publications

Scientific experimental data generated by all the bionomic technologies is characterized by heterogeneity in its representation formats, constituents, and generation processes and, therefore, also in its usage. Using the proteomics domain we demonstrate the important role of provenance information o manage, interpret and analyze experimental data. We present a novel approach that employs an ontology as a knowledge model to automatically create semantic provenance information for high-throughput mass spectrometry (MS) data in the glycoproteomics domain. The Semantic Provenance Annotation of Data in protEomics (SPADE) implementation is based on the ProPreO ontology, a large-process ontology ( ~500 classes, 40 named relationships …

Mobile Semantic Computing, Karthik Gomadam, Anupam Joshi, Amit P. Sheth

Kno.e.sis Publications

We propose to organize a special session on research in the intersection of mobile computing, the Semantic Web and Web services.

This session will examine how the research in these areas can serve as a foundation for new architectural and communication paradigms that can enhance service creation, distribution, discovery, integration and utilization in distributed and ubiquitous environments. Some of the initial areas that our early research have highlighted are :

1. Semantic annotation of data in bandwidth constrained environments such as mobile networks to promote efficient bandwidth utilization
2. Possibilities of using microformats such as RDFa and opportunities that can be explored …

Services Mashups: The New Generation Of Web Applications, Djamal Benslimane, Schahram Dustdar, Amit P. Sheth

Kno.e.sis Publications

Web services are becoming a major technology for deploying automated interactions between distributed and heterogeneous applications, and for connecting business processes. Service mashups indicate a way to create new Web applications by combining existing Web resources utilizing data and Web APIs. They facilitate the design and development of novel and modern Web applications based on easy-to-accomplish end-user service compositions.

Semantic Sensor Web, Amit P. Sheth

Kno.e.sis Publications

No abstract provided.

Unsupervised Discovery Of Compound Entities For Relationship Extraction, Cartic Ramakrishnan, Pablo N. Mendes, Shaojun Wang, Amit P. Sheth

Kno.e.sis Publications

In this paper we investigate unsupervised population of a biomedical ontology via information extraction from biomedical literature. Relationships in text seldom connect simple entities. We therefore focus on identifying compound entities rather than mentions of simple entities. We present a method based on rules over grammatical dependency structures for unsupervised segmentation of sentences into compound entities and relationships. We complement the rule-based approach with a statistical component that prunes structures with low information content, thereby reducing false positives in the prediction of compound entities, their constituents and relationships. The extraction is manually evaluated with respect to the UMLS Semantic Network …

Monetizing User Activity On Social Networks, Meenakshi Nagarajan, Kamal Baid, Amit P. Sheth, Shaojun Wang

Kno.e.sis Publications

No abstract provided.

Strategic Importance Of Higher Education And Research In Positioning Gujarat For Global Competitiveness, Amit P. Sheth

Kno.e.sis Publications

No abstract provided.

Collaborative Ro1 With Ncbo Semantics And Services Enabled Problem Solving Environment For Trypanosoma Cruzi, Amit P. Sheth, Rick Tarleton, Prashant Doshi, Mark Musen, Natasha Noy, Satya S. Sahoo, Daniel B. Weatherly

Kno.e.sis Publications

No abstract provided.

Semantic Sensor Web, Amit P. Sheth, Satya S. Sahoo

Kno.e.sis Publications

Sensors are distributed across the globe leading to an avalanche of data about our environment. It is possible today to utilize networks of sensors to detect and identify a multitude of observations, from simple phenomena to complex events and situations. The lack of integration and communication between these networks, however, often isolates important data streams and intensifies the existing problem of too much data and not enough knowledge. With a view to addressing this problem, the semantic sensor Web (SSW) proposes that sensor data be annotated with semantic metadata that will both increase interoperability and provide contextual information essential for …

Semantic Provenance For Escience: Managing The Deluge Of Scientific Data, Satya S. Sahoo, Amit P. Sheth, Cory Andrew Henson

Kno.e.sis Publications

Provenance information in eScience is metadata that's critical to effectively manage the exponentially increasing volumes of scientific data from industrial-scale experiment protocols. Semantic provenance, based on domain-specific provenance ontologies, lets software applications unambiguously interpret data in the correct context. The semantic provenance framework for eScience data comprises expressive provenance information and domain-specific provenance ontologies and applies this information to data management. The authors' "two degrees of separation" approach advocates the creation of high-quality provenance information using specialized services. In contrast to workflow engines generating provenance information as a core functionality, the specialized provenance services are integrated into a scientific workflow …

Hrests: An Html Microformat For Describing Restful Web Services, Jacek Kopecky, Karthik Gomadam, Tomas Vitvar

Kno.e.sis Publications

The Web 2.0 wave brings, among other aspects, the Programmable Web: increasing numbers of Web sites provide machine-oriented APIs and Web services. However, most APIs are only described with text in HTML documents. The lack of machine-readable API descriptions affects the feasibility of tool support for developers who use these services. We propose a microformat called hRESTS (HTML for RESTful Services) for machine-readable descriptions of Web APIs, backed by a simple service model. The hRESTS microformat describes main aspects of services, such as operations, inputs and outputs. We also present two extensions of hRESTS: SA-REST, which captures the facets of …

Joint Extraction Of Compound Entities And Relationships From Biomedical Literature, Cartic Ramakrishnan, Pablo N. Mendes, Rodrigo A.T.S. De Gama, Guilherme C.N. Ferreira, Amit P. Sheth

Kno.e.sis Publications

In this paper we identify some limitations of contemporary information extraction mechanisms in the context of biomedical literature. We present an extraction mechanism that generates structured representations of textual content. Our extraction mechanism achieves this by extracting compound entities, and relationships between them, occuring in text. A detailed evaluation of the relationship and compound entities extracted is presented. Our results show over 62% average precision across 8 relationship types tested with over 82% average precision for compound entity identification1.

Targeted Content Delivery For Social Media Content, Meenakshi Nagarajan, Kamal Baid, Amit P. Sheth, Shaojun Wang

Kno.e.sis Publications

Spotting contextually relevant keywords is fundamental to effective content suggestions on the Web. In this regard, misspellings, entity variations and off-topic discussions in content from Social Media pose unique challenges. Here, we present an algorithm that assists content delivery systems by identifying contextually relevant keywords and eliminating off-topic keywords. A preliminary user study over data from MySpace and Facebook clearly suggests the usefulness of our work in delivering more targeted content suggestions.

Traveling The Semantic Web Through Space, Theme And Time, Amit P. Sheth, Matthew Perry

Kno.e.sis Publications

In this installment of Semantics and Services, we further develop the idea of spatial, temporal, and thematic (STT) processing of semantic Web data and describe the Web infrastructure needed to support it. Starting from Ramesh Jain's vision of the EventWeb as a view of what's possible with a Web that better accommodates all three dimensions of event-related information (thematic, spatial, and temporal), we outline the architecture needed to support it and current research that aims to realize it.

A General Boosting Method And Its Application To Learning Ranking Functions For Web Search, Zhaohui Zheng, Hongyuan Zha, Tong Zhang, Olivier Chapelle, Keke Chen, Gordon Sun

Kno.e.sis Publications

We present a general boosting method extending functional gradient boosting to optimize complex loss functions that are encountered in many machine learning problems. Our approach is based on optimization of quadratic upper bounds of the loss functions which allows us to present a rigorous convergence analysis of the algorithm. More importantly, this general framework enables us to use a standard regression base learner such as decision trees for fitting any loss function. We illustrate an application of the proposed method in learning ranking functions for Web search by combining both preference data and labeled data for training. We present experimental …

Video On The Semantic Sensor Web, Cory Andrew Henson, Amit P. Sheth, Prateek Jain, Josh Pschorr, Terry Rapoch

Kno.e.sis Publications

Millions of sensors around the globe currently collect avalanches of data about our world. The rapid development and deployment of sensor technology is intensifying the existing problem of too much data and not enough knowledge. With a view to alleviating this glut, we propose that sensor data, especially video sensor data, can be annotated with semantic metadata to provide contextual information about videos on the Web. In particular, we present an approach to annotating video sensor data with spatial, temporal, and thematic semantic metadata. This technique builds on current standardization efforts within the W3C and Open Geospatial Consortium (OGC) and …

Semantic Web For Health Care And Biomedical Informatics, Amit P. Sheth

Kno.e.sis Publications

No abstract provided.

Leveraging Semantic Web Techniques To Gain Situational Awareness, Amit P. Sheth

Kno.e.sis Publications

No abstract provided.

Can Semantic Web Techniques Empower Comprehension And Projection In Cyber Situational Awareness?, Amit P. Sheth

Kno.e.sis Publications

No abstract provided.

Semantic Convergence Of Wikipedia Articles, Christopher J. Thomas, Amit P. Sheth

Kno.e.sis Publications

Social networking, distributed problem solving and human computation have gained high visibility. Wikipedia is a well established service that incorporates aspects of these three fields of research. For this reason it is a good object of study for determining quality of solutions in a social setting that is open, completely distributed, bottom up and not peer reviewed by certified experts. In particular, this paper aims at identifying semantic convergence of Wikipedia articles; the notion that the content of an article stays stable regardless of continuing edits. This could lead to an automatic recommendation of good article tags but also add …

Supporting Complex Thematic, Spatial And Temporal Queries Over Semantic Web Data, Matthew Perry, Amit P. Sheth, Farshad Hakimpour, Prateek Jain

Kno.e.sis Publications

Spatial and temporal data are critical components in many applications. This is especially true in analytical domains such as national security and criminal investigation. Often, the analytical process requires uncovering and analyzing complex thematic relationships between disparate people, places and events. Fundamentally new query operators based on the graph structure of Semantic Web data models, such as semantic associations, are proving useful for this purpose. However, these analysis mechanisms are primarily intended for thematic relationships. In this paper, we describe a framework built around the RDF metadata model for analysis of thematic, spatial and temporal relationships between named entities. We …

A Multi-Objective Genetic Algorithm That Employs A Hybrid Approach For Isolating Codon Usage Bias Indicative Of Translational Efficiency, Douglas W. Raiford, Dan E. Krane, Travis E. Doom, Michael L. Raymer

Kno.e.sis Publications

Isolation of translational efficiency bias can have important applications in gene expression prediction and heterologous protein production. In some genomes the presence of a high GC(AT)-content bias can confound the isolation of translational efficiency bias. In other organisms translational efficiency bias is weak making it difficult to isolate. Described here is a multi-objective genetic algorithm that improves the isolation of translational efficiency bias in Streptomyces coelicolor A3(2) and Pseudomonas aeruginosa PAO1, two organisms shown to have high GC-content and weak translational efficiency bias.

Swashup: Situational Web Applications Mashups, E. Michael Maximilien, Ajith Harshana Ranabahu, Stefan Tai

Kno.e.sis Publications

Distributed programming has shifted from private networks to the Internet using heterogeneous Web APIs. This enables the creation of situational applications of composed services exposing user interfaces, i.e., mashups. However, this programmable Web lacks unified models that can facilitate mashup creation, reuse, and deployments. This poster demonstrates a platform to facilitate Web 2.0 mashups.

A Proposed Statistical Protocol For The Analysis Of Metabolic Toxicological Data Derived From Nmr Spectroscopy, Benjamin J. Kelly, Paul E. Anderson, Nicholas V. Reo, Nicholas J. Delraso, Travis E. Doom, Michael L. Raymer

Kno.e.sis Publications

Nuclear magnetic resonance (NMR) spectroscopy is a non-invasive method of acquiring a metabolic profile from biofluids. This metabolic information may provide keys to the early detection of exposure to a toxin. A typical NMR toxicology data set has low sample size and high dimensionality. Thus, traditional pattern recognition techniques are not always feasible. In this paper, we evaluate several common alternatives for isolating these biomarkers. The fold test, unpaired t-test, and paired t-test were performed on an NMR-derived toxicological data set and results were compared. The paired t-test method was preferred, due to its ability to attribute statistical significance, to …

Realizing The Relationship Web: Morphing Information Access On The Web From Today's Document- And Entity-Centric Paradigm To A Relationship-Centric Paradigm, Amit P. Sheth

Kno.e.sis Publications

No abstract provided.

The Programmable Web: Agile, Social, And Grassroots Computing, E. Michael Maximilien, Ajith Harshana Ranabahu

Kno.e.sis Publications

Web services, the semantic Web, and Web 2.0 are three somewhat separate movements trying to make the Web a programmable substrate. While each has achieved some level of success on their own right, it is becoming apparent that the grassroots approach of the Web 2.0 is gaining greater success than the other two. In this paper we analyze each movement, briefly describing its main traits, and outlining its primary assumptions. We then frame the common problem of achieving a programmable Web within the context of distributed computing and software engineering and then attempt to show why Web 2.0 is closest …