OS and Networks Commons^™

Identifying Patterns In Dna Change, Jason R. Gilder, Dan E. Krane, Travis E. Doom, Michael L. Raymer

Kno.e.sis Publications

Now that a draft sequence of the human genome is nearly complete, questions regarding both the information contained within our genetic blueprints as well as the manner in which that information content changes over time can be addressed in ways that had not previously been possible. By their very nature, some of the nucleotide sequences present within our genome allow detailed examination of the mode and pattern of evolution that has shaped our genetic instructions over time spans of tens of millions of years. Alu repeats are one example. Using these relatively short, ubiquitous DNA sequences we explore the problem …

Ontology Driven Information Systems In Action (Capturing And Applying Existing Knowledge To Semantic Applications), Amit P. Sheth

Kno.e.sis Publications

No abstract provided.

Generalized Metrics And Uniquely Determined Logic Programs, Pascal Hitzler, Anthony K. Seda

Computer Science and Engineering Faculty Publications

The introduction of negation into logic programming brings the benefit of enhanced syntax and expressibility, but creates some semantical problems. Specifically, certain operators which are monotonic in the absence of negation become non-monotonic when it is introduced, with the result that standard approaches to denotational semantics then become inapplicable. In this paper, we show how generalized metric spaces can be used to obtain fixed-point semantics for several classes of programs relative to the supported model semantics, and investigate relationships between the underlying spaces we employ. Our methods allow the analysis of classes of programs which include the acyclic, locally hierarchical, …

Semantic N-Gram Language Modeling With The Latent Maximum Entropy Principle, Shaojun Wang, Dale Schuurmans, Fuchun Peng, Yunxin Zhao

Kno.e.sis Publications

We describe a unified probabilistic framework for statistical language modeling-the latent maximum entropy principle-which can effectively incorporate various aspects of natural language, such as local word interaction, syntactic structure and semantic document information. Unlike previous work on maximum entropy methods for language modeling, which only allow explicit features to be modeled, our framework also allows relationships over hidden features to be captured, resulting in a more expressive language model. We describe efficient algorithms for marginalization, inference and normalization in our extended models. We then present experimental results for our approach on the Wall Street Journal corpus.

Web Service: Been There, Done That?, Steffen Staab, Will Van Der Aalst, V. Richard Benjamins, Amit P. Sheth, John A. Miller, Chistoph Bussler, Alexander Maedche, Dieter Fensel, Dennis Gannon

Kno.e.sis Publications

Web services can be defined as loosely coupled, reusable software components that semantically encapsulate discrete functionality and are distributed and programmatically accessible over standard Internet protocols. Web services have received a lot of hype, the reasons for which are not easily determined. Some of their benefits might even seem to waste away, once we touch on the nitty-gritty details, because Web services per se do not offer a solution to underlying problems. The contributions included in this section delve into some of these issues, including: pitfalls of workflow issues; structuring procedural knowledge into problem-solving methods; discussing how a low initial …

Semantic Web Processes, Jorge Cardoso, Amit P. Sheth

Kno.e.sis Publications

No abstract provided.

The Staging Transformation Approach To Mixing Initiative, Robert Capra, Michael Narayan, Saverio Perugini, Naren Ramakrishnan, Manuel A. Pérez-Quiñones

Computer Science Faculty Publications

Mixed-initiative interaction is an important facet of many conversational interfaces, flexible planning architectures, intelligent tutoring systems, and interactive information retrieval systems. Software systems for mixed-initiative interaction must enable us to both operationalize the mixing of initiative (i.e., support the creation of practical dialogs) and to reason in real-time about how a flexible mode of interaction can be supported (e.g., from a meta-dialog standpoint). In this paper, we present the staging transformation approach to mixing initiative, where a dialog script captures the structure of the dialog and dialog control processes are realized through generous use of program transformation techniques (e.g., partial …

Formal Concept Analysis And Resolution On Algebraic Domains - Preliminary Report, Matthias Wendt, Pascal Hitzler

Computer Science and Engineering Faculty Publications

We relate two formerly independent areas: Formal concept analysis and logic of domains. We will establish a correspondence between contextual attribute logic on formal contexts resp. concept lattices and a clausal logic on coherent algebraic cpos. We show how to identify the notion of formal concept in the domain theoretic setting. In particular, we show that a special instance of the resolution rule from the domain logic coincides with the concept closure operator from formal concept analysis. The results shed light on the use of contexts and domains for knowledge representation and reasoning purposes.

Learning Continuous Latent Variable Models With Bregman Divergences, Shaojun Wang, Dale Schuurmans

Kno.e.sis Publications

We present a class of unsupervised statistical learning algorithms that are formulated in terms of minimizing Bregman divergences— a family of generalized entropy measures defined by convex functions. We obtain novel training algorithms that extract hidden latent structure by minimizing a Bregman divergence on training data, subject to a set of non-linear constraints which consider hidden variables. An alternating minimization procedure with nested iterative scaling is proposed to find feasible solutions for the resulting constrained optimization problem. The convergence of this algorithm along with its information geometric properties are characterized.

On Quantitative Evaluation Of Clustering Systems, Ji He, Ah-Hwee Tan, Chew-Lim Tan, Sam-Yuan Sung

Research Collection School Of Computing and Information Systems

Clustering refers to the task of partitioning unlabelled data into meaningful groups (clusters). It is a useful approach in data mining processes for identifying hidden patterns and revealing underlying knowledge from large data collections. The application areas of clustering, to name a few, include image segmentation, information retrieval, document classification, associate rule mining, web usage tracking, and transaction analysis.

Web Service Technologies And Their Synergy With Simulation, Senthilanand Chandrasekaran, Gregory S. Silver, John A. Miller, Jorge Cardoso, Amit P. Sheth

Kno.e.sis Publications

The World Wide Web has had a huge influence on the computing field in general as well as simulation in particular (e.g., Web-Based Simulation). A new wave of development based upon XML has started. Two of the most interesting aspects of this development are the Semantic Web and Web Services. This paper examines the synergy between Web service technology and simulation. In one direction, Web service processes can be simulated for the purpose of correcting/improving the design. In the other direction, simulation models/components can be built out of Web services. Work on seamlessly using simulation as a part of Web …

On Computing Condensed Frequent Pattern Bases, Jian Pei, Guozhu Dong, Wei Zou, Jiawei Han

Kno.e.sis Publications

Frequent pattern mining has been studied extensively. However, the effectiveness and efficiency of this mining is often limited, since the number of frequent patterns generated is often too large. In many applications it is sufficient to generate and examine only frequent patterns with support frequency in close-enough approximation instead of in full precision. Such a compact but close-enough frequent pattern base is called a condensed frequent patterns-base.

In this paper, we propose and examine several alternatives at the design, representation, and implementation of such condensed frequent pattern-bases. A few algorithms for computing such pattern-bases are proposed. Their effectiveness at pattern …

Semantic Web Services And Processes: Semantic Composition And Quality Of Service, Jorge Cardoso, Chistoph Bussler, Amit P. Sheth, Dieter Fensel

Kno.e.sis Publications

Web Services are increasingly being adapted by Enterprises as the new approach to component-based solutions for enterprise applications. They hold potential to transform Web from a collection of information resources to a distributed computing platform. Many enterprise applications, including those supporting e-commerce take a form of processes, which need to be created from individual Web Services and other software components.

Implementing Qos Management For Workflow Systems, Jorge Cardoso, Amit P. Sheth, Krzysztof J. Kochut

Kno.e.sis Publications

Workflow management systems (WfMSs) have been used to support various types of business processes. As organizations adopt new working models, such as e-commerce, new challenges arise for workflow systems. One such challenge is that of quality of service (QoS) management. QoS management includes mechanisms that specify, compute, monitor, and control the quality of service of the products or services to be delivered. A good management of QoS directly impacts the success of organizations participating in e-commerce activities by better fulfilling customer expectations and achieving customer satisfaction. In this paper we present an implementation of a comprehensive QoS model for workflows …

Applying Xml/Xslt Technology: A Case Study, Krishnaprasad Thirunarayan

Kno.e.sis Publications

Typically, paper-based semi-structured documents are used to communicate technical requirements in the industry. One approach to improving the efficiency and flexibility of searching and manipulating these documents is to obtain them in electronic form, and then make explicit the technical content in a form amenable to pattern matching and symbol manipulation. This paper explores the role of XML Technology for these purposes: the use of XML language to make explicit the content of a document in a standard fashion, and the use of XSLT to manipulate the content and mediate between applications that need this content. In order to recognize …

Semi-Automatic Content Extraction From Specifications, Krishnaprasad Thirunarayan, Aaron Berkovich, Dan Z. Sokol

Kno.e.sis Publications

Specifications are critical to companies involved in complex manufacturing. The constant reading, reviewing, and analysis of materials and process specifications is extremely labor-intensive, quality impacting, and time-consuming. A conceptual design for a tool that provides computer-assistance in the interpretation of specification requirements has been created and a strategy for semantic-markup, which is the overlaying of abstract syntax (“the essence”) on the text, has been developed. The solution is based on the techniques for Information Extraction and the XML technology, and it captures the specification content within a semantic ontology. The working prototype of the tool being built will serve as …

Towards Peer-To-Peer Semantic Web: A Distributed Environment For Sharing Semantic Knowledge On The Web, Madhan Arumugam, Amit P. Sheth, I. Budak Arpinar

Kno.e.sis Publications

The real value of Semantic Web vision can be demonstrated if people and applications can create and discover new and interesting knowledge and share this knowledge in a transparent manner similar to the way data is exchanged today. Therefore, we believe that Semantic Web will consist of a distributed environment of shared and interoperable ontologies, which have emerged as common formalisms for knowledge representation. The users will need to discover new ontologies, which are not known to them before and use them to either annotate the content or to formulate their information requests. This requires an environment that supports creating, …

Modeling Quality Of Service For Workflows And Web Service Processes, Jorge Cardoso, John A. Miller, Amit P. Sheth, Jonathan Arnold

Kno.e.sis Publications

Workflow management systems (WfMSs) have been used to support various types of business processes for more than a decade now. In workflows for e-commerce and Web-services applications, suppliers and customers define a binding agreement or contract between the two parties, specifying Quality of Service (QoS) items such as products or services to be delivered, deadlines, quality of products, and cost of services. The management of QoS metrics directly impacts the success of organizations participating in e-commerce. Therefore, when services or products are created or managed using workflows, the underlying workflow system must accept the specifications and be able to estimate, …

Personalized Information Management For Web Intelligence, Ah-Hwee Tan

Research Collection School Of Computing and Information Systems

Web intelligence can be defined as the process of scanning and tracking information on the World Wide Web so as to gain competitive advantages. This paper describes a system known as Flexible Organizer for Competitive Intelligence (FOCI) that transforms raw URLs returned by internet search engines into personalized information portfolios. FOCI builds information portfolios by gathering and organizing online information according to a user's needs and preferences. Through a novel method called User-Configurable Clustering, a user can personalize his/her portfolios in terms of the content as well as the information structure. The personalized portfolios can then be used to track …

Process Composition: Quality Of Service Specification, Semantics And Adaptation, Jorge Cardoso, Amit P. Sheth

Kno.e.sis Publications

No abstract provided.

Characterizing Logic Programming Semantics With Level Mappings, Pascal Hitzler, Matthias Wendt

Computer Science and Engineering Faculty Publications

Declarative semantics in logic programming and nonmonotonic reasoning are often defined via fixed points of semantic operators. While many relationships between different semantics known from the literature have been studied, a uniform treatment is still missing. In this paper, we provide uniform operator-free characterizations for some of the most important semantics, more precisely, for the stable, the well-founded, and the Fitting semantics, for the weakly-perfect model semantics, and for the least model semantics for negation-free programs.

The Fixed-Point Theorems Of Priess-Crampe And Ribenboim In Logic Programming, Pascal Hitzler, Anthony K. Seda

Computer Science and Engineering Faculty Publications

Sibylla Priess-Crampe and Paulo Ribenboim recently established a general fixed-point theorem for multivalued mappings defined on generalized ultrametric spaces, and introduced it to the area of logic programming semantics. We discuss, in this context, the applications which have been made so far of this theorem and of its corollaries. In particular, we will relate these results to Scott-Ershov domains, familiar in programming language semantics, and to the generalized metrics of Khamsi, Kreinovich, and Misane which have been applied, by these latter authors, to logic programming. Amongst other things, we will also show that a unified treatment of the fixed-point theory …

Managing Semantic Content For The Web, Amit P. Sheth, Clemens Bertram, David Avant, Brian Hammond, Krzysztof Kochut, Yashodhan Warke

Kno.e.sis Publications

By associating meaning with content, the Semantic Web will facilitate search, interoperability, and the composition of complex applications. A recent Scientific American article described the Semantic Web as 'an extension of the current Web in which information is given well-defined meaning, better enabling computers and people to work in cooperation.' Not long ago, researchers at a Stanford University symposium predicted that this second phase of the Web would be as revolutionary as the Web itself.

Predicting Oral Reading Miscues, Jack Mostow, Joseph Beck, S. Vanessa Winter, Shaojun Wang

Kno.e.sis Publications

This paper explores the problem of predicting specific reading mistakes, called miscues, on a given word. Characterizing likely miscues tells an automated reading tutor what to anticipate, detect, and remediate. As training and test data, we use a database of over 100,000 miscues transcribed by University of Colorado researchers. We explore approaches that exploit different sources of predictive power: the uneven distribution of words in text, and the fact that most miscues are real words. We compare the approaches’ ability to predict miscues of other readers on other text. A simple rote method does best on the most frequent 100 …

Workflow Quality Of Service, Jorge Cardoso, Amit P. Sheth, John A. Miller

Kno.e.sis Publications

Workflow management systems (WfMSs) have been used to support various types of business processes for more than a decade now. In ecommerce processes, suppliers and customers define a binding agreement or contract between the two parties, specifying quality of service (QoS) items such as products or services to be delivered, deadlines, quality of products, and cost of service. Management of such QoS directly impacts success of organizations participating in e-commerce. Organizations operating in modern markets require an excellent degree of quality of service management. Products and services must be available to customers with well-defined specifications. A good management of quality …

Ilp Operators For Propositional Connectionist Networks, Miguel Angel Gutierrez-Naranjo, Pascal Hitzler

Computer Science and Engineering Faculty Publications

No abstract provided.

Towards Nonmonotonic Reasoning On Hierarchical Knowledge, Pascal Hitzler

Computer Science and Engineering Faculty Publications

W.C. Rounds and G.Q. Zhang have recently proposed to study a form of disjunctive logic programming generalized to algebraic domains [RZ01]. This system allows reasoning with information which is hierarchically structured and forms a (suitable) domain. We extend this framework to include reasoning with negative information, i.e. the implicit or explicit absence of bits of information. These investigations will naturally lead to a form of default reasoning which is strongly related to programming with answer sets to stable models, which has recently created much interest amongst artificial intelligence researchers concerned with knowledge representation and reasoning.

A Proposed Undergraduate Bioinformatics Curriculum For Computer Scientists, Travis E. Doom, Michael L. Raymer, Dan E. Krane, Oscar Garcia

Kno.e.sis Publications

Bioinformatics is a new and rapidly evolving discipline that has emerged from the fields of experimental molecular biology and biochemistry, and from the the artificial intelligence, database, and algorithms disciplines of computer science. Largely because of the inherently interdisciplinary nature of bioinformatics research, academia has been slow to respond to strong industry and government demands for trained scientists to develop and apply novel bioinformatics techniques to the rapidly-growing, freely-available repositories of genetic and proteomic data. While some institutions are responding to this demand by establishing graduate programs in bioinformatics, the entrance barriers for these programs are high, largely due to …

Multi-Dimensional Regression Analysis Of Time-Series Data Streams, Yixin Chen, Guozhu Dong, Jiawei Han, Benjamin W. Wah, Jianyong Wang

Kno.e.sis Publications

Real-time production systems and other dynamic environments often generate tremendous (potentially infinite) amount of stream data; the volume of data is too huge to be stored on disks or scanned multiple times. Can we perform on-line, multi-dimensional analysis and data mining of such data to alert people about dramatic changes of situations and to initiate timely, high-quality responses? This is a challenging task.

In this paper, we investigate methods for online, multi-dimensional regression analysis of time-series stream data, with the following contributions: (1) our analysis shows that only a small number of compressed regression measures instead of the complete stream …

Xml-Based Modeling And Simulation: Web Service Technologies And Their Synergy With Simulation, Senthilanand Chandrasekaran, Gregory S. Silver, John A. Miller, Jorge Cardoso, Amit P. Sheth

Kno.e.sis Publications

The World Wide Web has had an huge influence on the computing field in general as well as simulation in particular (e.g., Web-based simulation). A new wave of development based upon XML has started. Two of the most interesting aspects of this development are the Semantic Web and Web services. This paper examines the synergy between Web service technology and simulation. In one direction, Web service processes can be simulated for the purpose of correcting/improving the design. In the other direction, simulation models/components can be built out of Web services. Work on seamlessly using simulation as a part of Web …