Numerical Analysis and Scientific Computing Commons^™

36 - Investigation Of The Digital Footprint Of Scientific Research In Social Media – Preliminary Findings, Lee Logan, Dominik Soos, Sean Baker, Jian Wu

Undergraduate Research Symposium

Title: Investigation of The Digital Footprint of Scientific Research in Social Media – Preliminary Findings

Authors: Lee Logan, Sean Baker, Dominik Soos, Jian Wu

The spread of scientific information and research beyond the confines of academic institutions plays a central role in how the public understands and trusts modern sciences. Social media has become an essential means of dissemination for scholarly news, papers, and other forms of engagement. This research aims to explore how scientific research is disseminated over social media to understand its role as a bridge between peer-reviewed research and the public's overall understanding. To support the research …

A Universal Implementation Of Radiative Effects In Neutrino Event Generators, Júlia Tena-Vidal, Adi Ashkkenazi, Lawrence B. Weinstein, Peter Blunden, Steven Dytman, Noah Steinberg

Physics Faculty Publications

Due to the similarities between electron-nucleus (eA) and neutrino-nucleus scattering (νA), eA data can contribute key information to improve cross-section modeling in eA and hence in νA event generators. However, to compare data and generated events, either the data must be radiatively corrected or radiative effects need to be included in the event generators. We implemented a universal radiative corrections program that can be used with all reaction mechanisms and any eA event generator. Our program includes real photon radiation by the incident and scattered electrons, and virtual photon exchange and photon vacuum polarization diagrams. It …

State Preparation Of Lattice Field Theories Using Quantum Optimal Control, Jack Y. Araz, Siddhanth Bhowmick, Matt Grau, Thomas J. Mcentire, Felix Ringer

Physics Faculty Publications

We explore the application of quantum optimal control (QOC) techniques to state preparation of lattice field theories on quantum computers. As a first example, we focus on the Schwinger model, quantum electrodynamics in 1 + 1 dimensions. We demonstrate that QOC can significantly speed up the ground state preparation compared to gate-based methods, even for models with long-range interactions. Using classical simulations, we explore the dependence on the interqubit coupling strength and the device connectivity, and we study the optimization in the presence of noise. While our simulations indicate potential speedups, the results strongly depend on the device specifications. In …

An Analytical Review Of Preprocessing Techniques In Bengali Natural Language Processing, Sovon Chakraborty, Protiva Das, Shakib Mahmud Dipto, Md Aktaruzzaman Pramanik, Jannatun Noor

Computer Science Faculty Publications

Research in Bengali Natural Language Processing (BNLP) is rapidly expanding. Despite being one of the most widely spoken languages in the world, BNLP research remains insufficient, particularly in Bengali speech recognition. The languages rich morphology, agglutinative structure, and diverse dialects make text and speech processing especially challenging. However, these challenges can be addressed with effective preprocessing techniques. Various organizations in Bangladesh and West Bengal are integrating Natural Language Processing (NLP) into their services, but without a thorough understanding of preprocessing, these implementations remain incomplete. Applying proper preprocessing techniques to the Bengali language will serve as a foundation for developing robust …

Geometric Gnns For Charged Particle Tracking At Gluex, Ahmed Hossam Mohammed, Kishansingh Rajput, Simon Taylor, Denis Furletov, Sergey Furletov, Malachi Schram

Computer Science Faculty Publications

Nuclear physics experiments are aimed at uncovering the fundamental building blocks of matter. The experiments involve high-energy collisions that produce complex events with many particle trajectories. Tracking charged particles resulting from collisions in the presence of a strong magnetic field is critical to enable the reconstruction of particle trajectories and precise determination of interactions. It is traditionally achieved through combinatorial approaches that scale worse than linearly as the number of hits grows. Since particle hit data naturally form a point cloud and can be structured as graphs, graph neural networks (GNNs) emerge as an intuitive and effective choice for this …

A Bibliographic And Topic Modeling Analysis Of The P-Adic Theory Literature Using Latent Dirichlet Allocation, Humberto Llinás, Ismael Gutiérrez, Anselmo Torresblanca, Javier De La Hoz, Brian Llinás

Computer Science Faculty Publications

P-adic analysis, introduced by Kurt Hensel in the early 20th century, has developed into a fundamental area of mathematical research with broad applications in number theory, algebraic geometry, and mathematical physics. This study aims to examine the thematic evolution and scholarly impact of p-adic research through a comprehensive topic modeling and bibliometric analysis. Using classical bibliometric techniques (e.g., performance analysis, co-authorship, and co-citation networks) combined with Latent Dirichlet Allocation (LDA), we analyzed 7388 peer-reviewed documents published between 1965 and 2024. The computational workflow was conducted using R (version 4.4.1) and VOSviewer (version 1.6.20), which enabled the identification of 20 distinct …

Can Llms Beat Humans On Discerning Human-Written And Llm-Generated Science News, Dominik Soós, Meng Jiang, Jian Wu

Computer Science Faculty Publications

Science news is increasingly important in connecting scientists and the public by sharing discoveries and innovations. With the rise of large language models (LLMs), there is potential to automate science news creation, but concerns exist about the quality of LLM-generated news versus human-written news. This paper explores whether LLMs can outperform humans in distinguishing between human-written and LLM-generated news. Inspired by the Chain-of-Thought prompting method, we designed a simple yet effective variant called Guided Few-shot (GFS), which encodes the characteristics of news of two types with examples. Our experiments indicated that GFS with just a single example effectively boosted the …

From Philosophy To Nlu: Evolving Definitions Of Research Hypotheses, Jian Wu, Sarah Rajtmajer

Computer Science Faculty Publications

Over the past decades, alongside advancements in natural language processing, significant attention has been paid to training models to automatically extract, understand, test, and generate hypotheses in open and scientific domains. However, interpretations of the term hypothesis for various natural language understanding (NLU) tasks have migrated from traditional definitions in the natural, social, and formal sciences. Even within NLU, we observe differences defining hypotheses across literature. In this paper, we overview and delineate various definitions of hypothesis. Especially, we discern the nuances of definitions across recently published NLU tasks. We highlight the importance of well-structured and well-defined hypotheses, particularly as …

An Introduction To The Time-Independent Schrödinger Equation And Methods To Solve It, Vu Giang, Alex Gnech

OUR Journal: ODU Undergraduate Research Journal

The Time-Independent Schrödinger Equation is a linear elliptic PDE that describes quantum-mechanical systems. Its significance in the science of submicroscopic phenomena, particularly quantum mechanics, is as central as Newton’s laws of motion are to classical mechanics. This study uses various methods, including novel neural networks and finite difference schemes, to solve the one-dimensional two-body equation.

Harnessing Social Media For Disaster Response: Intelligent Identification Of Reliable Rescue Requests During Hurricanes, Wael Khallouli

Engineering Management & Systems Engineering Theses & Dissertations

Hurricanes pose a significant threat to both human lives and infrastructure. Decision-makers face substantial challenges during such events, as they must act quickly to address victims’ needs. Social media platforms provide a valuable source for quick and real-time information. Recent hurricane events have shown that people turn to social media to call for help when official communication channels, such as 911, are overwhelmed. However, extracting actionable information from the massive number of messages posted on social media is challenging. Furthermore, verifying social media messages posted by the public is a critical concern for disaster response practitioners, making them hesitant to …

Predicting Compressive Strength Of Concrete Incorporating Fly Ash, Blast Furnace Slag, And Superplasticizer Using Machine Learning Techniques, Muhammad Faisal Yaqub

2024 REYES Proceedings

Concrete is the second most essential element in the construction industry, and its strength requirements vary based on the specific conditions of each project. However, determining the compressive strength of concrete involves laboratory tests, which wastes a lot of time and money. Researchers have developed machine learning models that predict the compressive strength of cement-based concrete having various mixes. In this research, the compressive strength of concrete incorporating fly ash, blast furnace slag, and superplasticizer is predicted using different machine learning models, namely, Linear Regression, Random Forest Regression, Decision Tree Regression, Extreme Gradient Boosting, Light Gradient Boosting, AdaBoost, and CatBoost …

Quantifying Potential Marine Debris Sources And Potential Threats To Penguins On The West Antarctic Peninsula, Katherine L. Gallagher, Megan A. Cimino, Michael S. Dinniman, Heather J. Lynch

OES Faculty Publications

Marine pollution is becoming ubiquitous in the environment. Observations of pollution on beaches, in the coastal ocean, and in organisms in the Antarctic are becoming distressingly common. Increasing human activity, growing tourism, and an expanding krill fishing industry along the West Antarctic Peninsula all represent potential sources of plastic pollution and other debris (collectively referred to as debris) to the region. However, the sources of these pollutants from point (pollutants released from discrete sources) versus non-point (pollutants from a large area rather than a specific source) sources are poorly understood. We used buoyant simulated particles released in a high-resolution physical …

Bayesian Neural Netwok Variational Autoencoder Inverse Mapper (Bnn-Vaim) And Its Application In Compton Form Factors Extraction, Md Fayaz Bin Hossen, Tareq Alghamdi, Manal Almaeen, Yaohang Li

Computer Science Faculty Publications

We extend the Variational Autoencoder Inverse Mapper (VAIM) framework for the inverse problem of extracting Compton Form Factors (CFFs) from deeply virtual exclusive reactions, such as the unpolarized Deeply virtual exclusive scattering (DVCS) cross section. VAIM is an end-to-end deep learning framework to address the solution ambiguity issue in ill-posed inverse problems, which comprises of a forward mapper and a backward mapper to simulate the forward and inverse processes, respectively. In particular, we incorporate Bayesian Neural Network (BNN) into the VAIM architecture (BNN-VAIM) for uncertainty quantification. By sampling the weights and biases distributions of the BNN in the backward mapper …

Speculative Anisotropic Mesh Adaptation On Shared Memory For Cfd Applications, Christos Tsolakis, Nikos Chrisochoides

Computer Science Faculty Publications

Efficient and robust anisotropic mesh adaptation is crucial for Computational Fluid Dynamics (CFD) simulations. The CFD Vision 2030 Study highlights the pressing need for this technology, particularly for simulations targeting supercomputers. This work applies a fine-grained speculative approach to anisotropic mesh operations. Our implementation exhibits more than 90% parallel efficiency on a multi-core node. Additionally, we evaluate our method within an adaptive pipeline for a spectrum of publicly available test-cases that includes both analytically derived and error-based fields. For all test-cases, our results are in accordance with published results in the literature. Support for CAD-based data is introduced, and its …

The Propagation And Execution Of Malware In Images, Piper Hall

Cybersecurity Undergraduate Research Showcase

Malware has become increasingly prolific and severe in its consequences as information systems mature and users become more reliant on computing in their daily lives. As cybercrime becomes more complex in its strategies, an often-overlooked manner of propagation is through images. In recent years, several high-profile vulnerabilities in image libraries have opened the door for threat actors to steal money and information from unsuspecting users. This paper will explore the mechanisms by which these exploits function and how they can be avoided.

Fair Signposting Profile, Herbert Van De Sompel, Martin Klein, Shawn Jones, Michael L. Nelson, Simeon Warner, Anusuriya Devaraju, Robert Huber, Wilko Steinhoff, Vyacheslav Tykhonov, Luc Boruta, Enno Meijers, Stian Soiland-Reyes, Mark Wilkonson

Computer Science Faculty Publications

[First paragraph] This page details concrete recipes that platforms that host research outputs (e.g. data repositories, institutional repositories, publisher platforms, etc.) can follow to implement Signposting, a lightweight yet powerful approach to increase the FAIRness of scholarly objects.

Efficient Gpu Implementation Of Automatic Differentiation For Computational Fluid Dynamics, Mohammad Zubair, Desh Ranjan, Aaron Walden, Gabriel Nastac, Eric Nielsen, Boris Diskin, Marc Paterno, Samuel Jung, Joshua Hoke Davis

Computer Science Faculty Publications

Many scientific and engineering applications require repeated calculations of derivatives of output functions with respect to input parameters. Automatic Differentiation (AD) is a method that automates derivative calculations and can significantly speed up code development. In Computational Fluid Dynamics (CFD), derivatives of flux functions with respect to state variables (Jacobian) are needed for efficient solutions of the nonlinear governing equations. AD of flux functions on graphics processing units (GPUs) is challenging as flux computations involve many intermediate variables that create high register pressure and require significant memory traffic because of the need to store the derivatives. This paper presents a …

Claimdistiller: Scientific Claim Extraction With Supervised Contrastive Learning, Xin Wei, Md Reshad Ul Hoque, Jian Wu, Jiang Li

Computer Science Faculty Publications

The growth of scientific papers in the past decades calls for effective claim extraction tools to automatically and accurately locate key claims from unstructured text. Such claims will benefit content-wise aggregated exploration of scientific knowledge beyond the metadata level. One challenge of building such a model is how to effectively use limited labeled training data. In this paper, we compared transfer learning and contrastive learning frameworks in terms of performance, time and training data size. We found contrastive learning has better performance at a lower cost of data across all models. Our contrastive-learning-based model ClaimDistiller has the highest performance, boosting …

Coupled Dynamics Of Spin Qubits In Optical Dipole Microtraps: Application To The Error Analysis Of A Rydberg-Blockade Gate, L. V. Gerasimov, R. R. Yusupov, A. D. Moiseevsky, I. Vybornyi, K. S. Tikhonov, S. P. Kulik, S. S. Straupe, Charles I. Sukenik, D. V. Kupriyanov

Physics Faculty Publications

Single atoms in dipole microtraps or optical tweezers have recently become a promising platform for quantum computing and simulation. Here we report a detailed theoretical analysis of the physics underlying an implementation of a Rydberg two-qubit gate in such a system—a cornerstone protocol in quantum computing with single atoms. We focus on a blockade-type entangling gate and consider various decoherence processes limiting its performance in a real system. We provide numerical estimates for the limits on fidelity of the maximally entangled states and predict the full process matrix corresponding to the noisy two-qubit gate. We consider different excitation geometries and …

Ranked List Fusion And Re-Ranking With Pre-Trained Transformers For Arqmath Lab, Shaurya Rohatgi, Jian Wu, C. Lee Giles

Computer Science Faculty Publications

This paper elaborates on our submission to the ARQMath track at CLEF 2021. For our submission this year we use a collection of methods to retrieve and re-rank the answers in Math Stack Exchange in addition to our two-stage model which was comparable to the best model last year in terms of NDCG’. We also provide a detailed analysis of what the transformers are learning and why is it hard to train a math language model using transformers. This year’s submission to Task-1 includes summarizing long question-answer pairs to augment and index documents, using byte-pair encoding to tokenize formula and …

Extraction And Evaluation Of Statistical Information From Social And Behavioral Science Papers, Sree Sai Teja Lanka, Sarah Rajtmajer, Jian Wu, C. Lee Giles

Computer Science Faculty Publications

With substantial and continuing increases in the number of published papers across the scientific literature, development of reliable approaches for automated discovery and assessment of published findings is increasingly urgent. Tools which can extract critical information from scientific papers and metadata can support representation and reasoning over existing findings, and offer insights into replicability, robustness and generalizability of specific claims. In this work, we present a pipeline for the extraction of statistical information (p-values, sample size, number of hypotheses tested) from full-text scientific documents. We validate our approach on 300 papers selected from the social and behavioral science literatures, and …

Smartcitecon: Implicit Citation Context Extraction From Academic Literature Using Unsupervised Learning, Chenrui Gao, Haoran Cui, Li Zhang, Jiamin Wang, Wei Lu, Jian Wu

Computer Science Faculty Publications

We introduce SmartCiteCon (SCC), a Java API for extracting both explicit and implicit citation context from academic literature in English. The tool is built on a Support Vector Machine (SVM) model trained on a set of 7,058 manually annotated citation context sentences, curated from 34,000 papers in the ACL Anthology. The model with 19 features achieves F₁=85.6%. SCC supports PDF, XML, and JSON files out-of-box, provided that they are conformed to certain schemas. The API supports single document processing and batch processing in parallel. It takes about 12–45 seconds on average depending on the format to process a …

Acknowledgement Entity Recognition In Cord-19 Papers, Jian Wu, Pei Wang, Xin Wei, Sarah Rajtmajer, C. Lee Giles, Christopher Griffin

Computer Science Faculty Publications

Acknowledgements are ubiquitous in scholarly papers. Existing acknowledgement entity recognition methods assume all named entities are acknowledged. Here, we examine the nuances between acknowledged and named entities by analyzing sentence structure. We develop an acknowledgement extraction system, AckExtract based on open-source text mining software and evaluate our method using manually labeled data. AckExtract uses the PDF of a scholarly paper as input and outputs acknowledgement entities. Results show an overall performance of F₁=0.92. We built a supplementary database by linking CORD-19 papers with acknowledgement entities extracted by AckExtract including persons and organizations and find that only up to …

Automatic Slide Generation For Scientific Papers, Athar Sefid, Jian Wu, Prasenjit Mitra, C. Lee Giles

Computer Science Faculty Publications

We describe our approach for automatically generating presentation slides for scientific papers using deep neural networks. Such slides can help authors have a starting point for their slide generation process. Extractive summarization techniques are applied to rank and select important sentences from the original document. Previous work identified important sentences based only on a limited number of features that were extracted from the position and structure of sentences in the paper. Our method extends previous work by (1) extracting a more comprehensive list of surface features, (2) considering semantic or meaning of the sentence, and (3) using context around the …

A Survey Of Matrix Completion Methods For Recommendation Systems, Andy Ramlatchan, Mengyun Yang, Quan Liu, Min Li, Jianxin Wang, Yaohang Li

Computer Science Faculty Publications

In recent years, the recommendation systems have become increasingly popular and have been used in a broad variety of applications. Here, we investigate the matrix completion techniques for the recommendation systems that are based on collaborative filtering. The collaborative filtering problem can be viewed as predicting the favorability of a user with respect to new items of commodities. When a rating matrix is constructed with users as rows, items as columns, and entries as ratings, the collaborative filtering problem can then be modeled as a matrix completion problem by filling out the unknown elements in the rating matrix. This article …

Novel Monte Carlo Methods For Large-Scale Linear Algebra Operations, Hao Ji

Computer Science Theses & Dissertations

Linear algebra operations play an important role in scientific computing and data analysis. With increasing data volume and complexity in the "Big Data" era, linear algebra operations are important tools to process massive datasets. On one hand, the advent of modern high-performance computing architectures with increasing computing power has greatly enhanced our capability to deal with a large volume of data. One the other hand, many classical, deterministic numerical linear algebra algorithms have difficulty to scale to handle large data sets.

Monte Carlo methods, which are based on statistical sampling, exhibit many attractive properties in dealing with large volume of …

Machine Learning Methods For Brain Image Analysis, Ahmed Fakhry

Computer Science Theses & Dissertations

Understanding how the brain functions and quantifying compound interactions between complex synaptic networks inside the brain remain some of the most challenging problems in neuroscience. Lack or abundance of data, shortage of manpower along with heterogeneity of data following from various species all served as an added complexity to the already perplexing problem. The ability to process vast amount of brain data need to be performed automatically, yet with an accuracy close to manual human-level performance. These automated methods essentially need to generalize well to be able to accommodate data from different species. Also, novel approaches and techniques are becoming …

High-Fidelity Simulations Of Long-Term Beam-Beam Dynamics On Gpus, B. Terzić, K. Arumugam, M. Aturban, C. Cotnoir, A. Godunov, D. Ranjan, M. Stefani, M. Zubair, F. Lin, V. Morozov, Y. Roblin, H. Zhang

Physics Faculty Publications

Future machines such as the Electron Ion Collider (MEIC), linac-ring machines (eRHIC) or LHeC are particularly sensitive to beam-beam effects. This is the limiting factor for long-term stability and high luminosity reach. The complexity of the non-linear dynamics makes it challenging to perform such simulations typically requiring millions of turns. Until recently, most of the methods have involved using linear approximations and/or tracking for a limited number of turns. We have developed a framework which exploits a massively parallel Graphical Processing Units (GPU) architecture to allow for tracking millions of turns in a sympletic way up to an arbitrary order. …

Numerical Studies Of The A6 Relativistic Magnetron Using Particle-In-Cell Simulations, Vineetha Jujjavarapu

Electrical & Computer Engineering Theses & Dissertations

The magnetron became a major component in radar systems around the time of the World War II. More recent radar techniques require short microwave pulses (with nanosecond pulse-widths for ultra wideband operations) and high peak power in the Giga-Watt range. In order to achieve these specifications for the military, the magnetron needs to have both a fast start and the rapid growth rate of oscillations in order to serve as a microwave source for the short-pulse applications. These two factors depend on the geometry of the cathode. Other requirements include high conversion efficiency and low leakage current (in order to …

Computational Analysis Of Gene Expression And Connectivity Patterns In The Convoluted Structures Of Mouse Cerebellum, Tao Zeng

Computer Science Theses & Dissertations

One significant difference between evolved mammalian brains and other species is that mammalian brains exhibit increasingly convoluted structures in the cerebral cortex. Groove and ridge shaped structures named gyri and sulci expand surface area of cerebral cortex, making more functions possible. Prior studies using neuroimaging techniques such as dMRI and DTI have revealed that neural fibers are heavily connected to gyri comparing to those connected to sulci, such macro-scale experiments indicates that gyri are involved in large scale information processing while sulci process information locally. However, molecular and cellar level evidences, namely, gene expression pattern and its resulting neuronal connectivity …