Numerical Analysis and Scientific Computing Commons^™

Pyspqr: A Python Package For Density Estimation Using Deep Learning, Cameron Eddy, Reetam Majumder

Electrical Engineering and Computer Science Undergraduate Honors Theses

Splines are used for representing complex functions. In statistics, splines can be used for distributional shapes that are difficult to model by traditional parametric approaches. Ramsay (1) uses M-Spline bases to estimate continuous distributions. Semi-Parametric Quantile Regression (SPQR), developed by Xu and Reich (2), models conditional distributions where a neural network is used to estimate the basis function weights that depend on covariates. (3) implements a package for SPQR in R. We build on this by implementing a version of SPQR in Python with PyTorch. By using PyTorch, we can use more sophisticated deep learning architectures than those available in …

Towards Physics-Informed Neural Networks For Simulating Multiphase Geothermal Convection​*, Daniel C. Patton, Andrew Harrison Eno

Campus Research Month

Water and steam flow through porous rock, transferring heat via conduction and buoyancy-driven convection caused by density differences. Traditional numerical methods (finite-volume/finite-element) model this well but can become memory-intensive and unstable for long, high-detail simulations. This work demonstrates a Physics-Informed Neural Network (PINN) using a finite-difference approach within the NVIDIA PhysicsNeMo framework to simulate magma chambers in 2D. Tested on the Rio Pisco pluton in Peru, results are compared with the USGS HYDROTHERM model. PINNs learn from physical laws, offering accurate, flexible solutions with less data and development effort.

Maddenlite, Sergio Pena

Presentations - 2026

Problem •“What If” scenarios impossible to test accurately •Commercial games rely on arcade physics •Spreadsheets lack visual engagement

Motivation •Passion for football analytics •Desire to simulate cross-era matchups •Apply math models to real-world sports data

Solution •Python based simulation engine using historical play-by-play data •Simulates outcomes based on probability

A Virtual-Reality-Based Dental Simulator For Endodontics With Automated Formative Feedback, Yousef Salah Abo El Ela

Theses and Dissertations

Advancements in virtual reality (VR) and haptic technology are transforming the landscape of medical and dental education, offering new avenues for safe, immersive, and repeatable training experiences. Within dentistry, endodontics presents unique challenges for preclinical education due to anatomical complexity, limited access to extracted teeth, ethical concerns, and the shortcomings of conventional plastic models. Despite endodontics specific plastic teeth being available, they fall short of replicating the hardness of real extracted teeth, are relatively costly compared to generic plastic teeth, and are ultimately a disposable item which makes them inadequate as a sustainable long-term solution. Extracted teeth do a much …

Geovig And Purevig: Geometry-Aware Architectures For Efficient Computer Vision, Omar Ismail

Theses and Dissertations (Comprehensive)

Deploying deep learning models for medical image analysis on mobile devices requires a balance between inference latency, memory footprint, and delineating anatomical boundaries with high accuracy. While Convolutional Neural Networks (CNNs) and mobile Vision Transformers (ViTs) offer efficiency, they often struggle to model the irregular, non-local geometric structures inherent in biological tissues without incurring prohibitive computational costs. In this thesis, we introduce GeoViG (Geometric Vision Graph), an architecture that bridges the gap between efficient grid-based processing and explicit Geometric Deep Learning. GeoViG introduces a novel transition from high-resolution pixel grids to low-resolution dynamic graphs via a SpreadEdgePool operator, a geometry-aware …

Morphology-Aware Hrv Estimation From Wrist Ppg In Sedentary Scenarios, Changshuo Hu, Hung Manh Pham, Dong Ma

Research Collection School Of Computing and Information Systems

Photoplethysmography (PPG) is widely used in wearable devices for non-invasive heart rate variability (HRV) monitoring. While most prior work focuses on mitigating motion artifacts, recent studies highlight that even subtle contact pressure variations can distort waveform morphology and lead to inaccurate HRV estimates. In this work, we propose a morphology-aware deep learning framework that conditions HRV estimation on beat-level waveform types. Our model jointly encodes the raw PPG waveform and a sequence of pressure-induced morphology labels using parallel encoders, integrates them via cross-attention, and predicts normal-to-normal (NN) intervals and beat count to support downstream HRV computation. Evaluated on the public …

Designing A Data Collection And Visualization Toolkit For Scalable Tensor Algebra In Quantum Chemistry Applications, Epiya J. Ebiapia

LSU Master's Theses

Large-scale quantum chemistry computations, such as those executed with the Tensor Algebra for Many-body Methods (TAMM) framework, require careful configuration of runtime parameters to achieve high performance and cost efficiency in high-performance computing (HPC) and cloud environments. Without effective performance analysis tools, researchers risk inefficient use of computational resources, leading to longer runtimes and higher costs.

To address this challenge, this thesis presents the design and implementation of a performance profiling and visualization toolkit for TAMM, developed as part of the DOE TEC4 project in collaboration with Pacific Northwest National Laboratory, Microsoft, and Louisiana State University. The toolkit collects detailed …

How’S It Growing? Tools For Observing Snow And Sea Ice In A Changing Arctic Ocean, Ian Alexander Raphael

Dartmouth College Ph.D Dissertations

September Arctic sea ice extent has diminished by roughly 50% in the 45 years since satellite observations began. The Arctic Ocean may experience ice-free summers within the next decade, with implications for habitat, resource extraction, geopolitics, and local and global climate change. To predict how Arctic sea ice will change in the future, we need to understand its behavior in the present. In situ sea ice mass balance measurements (snow accumulation, ice growth, snow and ice surface melt, and bottom melt) are essential for studying the processes driving rapid changes in the ice pack, and for validating remote sensing measurements …

On The Design Of A Framework For Large-Scale Exploratory Graph Analytics, Oliver Andres Alvarado Rodriguez

Dissertations

Large-scale exploratory graph analytics merges data science with high-performance computing to extract critical insights from network-representable data. Data scientists routinely analyze data from the natural, social, and computing sciences by representing it as networks, or graphs, where objects become vertices and their relationships become edges. This representation allows data scientists to add graph analytics to their toolbox. However, designing tools for large-scale exploratory graph analytics is challenging due to the complexities of graph algorithms, such as high communication in distributed systems and large memory demands. These challenges can lead to overly complex software, which limits usability and development to a …

Towards Testing, Detecting, And Debloating Insecure Components In Android Applications, Zicheng Zhang

Dissertations and Theses Collection (Open Access)

The Android ecosystem’s openness and extensibility have fueled its dominance in the mobile market, but they also broaden the attack surface of applications by introducing insecure or redundant methods. Vulnerabilities arise from various sources, including insecure API usage, code cloning, and feature bloat, especially from unneeded components introduced during development. To address these challenges, this dissertation presents a systematic, three-phase pipeline that transitions seamlessly from vulnerability discovery to clone-based detection and, ultimately, to dynamic mitigation through runtime debloating. Each phase builds upon the insights and limitations of the previous, collectively forming a practical approach to improving Android app security.

In …

Prioritizing Speech Test Cases, Zhou Yang, Jieke Shi, Muhammad Hilmi Asyrofi, Bowen Xu, Xin Zhou, Donggyun Han, David Lo

Research Collection School Of Computing and Information Systems

As Automated Speech Recognition (ASR) systems gain widespread acceptance, there is a pressing need to rigorously test and enhance their performance. Nonetheless, the process of collecting and executing speech test cases is typically both costly and time-consuming. This presents a compelling case for the strategic prioritization of speech test cases, which consist of a piece of audio and the corresponding reference text. The central question we address is: In what sequence should speech test cases be collected and executed to identify the maximum number of errors at the earliest stage? In this study, we introduce PRiOritizing sPeecH tEsT …

Towards Smart Farming: Image-Based Crop Health Assessment And Disease Diagnosis Using Deep Learning Techniques, Kristina Botova

Master's Theses or Doctor of Nursing Practice

Accurate crop monitoring is essential for optimizing agricultural productivity and ensuring food security. This study presents a comprehensive deep learning framework for image crop type recognition, health status prediction, and disease detection using multiple Convolutional Neural Network (CNN) models. The proposed approach uses open-source datasets consisting of five crop types (apple, corn, grape, potato, tomato), varying health conditions, and common diseases. By deploying specialized CNN architecture focused on each task, the system achieves a high accuracy of 99.25% in classifying crop types, identifying health status, and detecting specific diseases. Compared to a single CNN model, the use of the proposed …

Development Of Software For Genetic Distances, Genotyping, And Phylogenetics Using Rna-Seq Data, Andrew C. Tapia

Theses and Dissertations--Computer Science

This dissertation concerns a new application of RNA-seq data—computation of pairwise genetic distance matrices. RNA-seq captures sequences of RNA molecules in some cells or tissues of interest. RNA-seq provides data are well-suited to studies examining gene expression, and its use for this purpose is currently widespread. A pairwise genetic distance matrix, the main topic of this dissertation, quantifies differences in the genomes of every pair of samples (e.g., individuals) in a given set. Genetic distance matrices are versatile; they can be used for various kinds of downstream analyses, including genotyping, phylogenetics, and genetic diversity measurement. Although DNA sequence data are …

Visualization Of Paleocurrents On A Web Application Using Gplates, Anjan Sapkota

MS in Computer Science Theses

Paleocurrents are flow directions derived from features of sedimentary rocks that reveal the direction of the current of wind or water that deposited the sediment. In 2015, Brand et al. created a global database of paleocurrents, which contains over 1,000,000 measurements worldwide: North America, South America, Australia, Great Britain, parts of Western Europe, China, Africa are fairly well represented; Antarctica, Eastern Europe, and Asia are modestly represented and Russia is poorly represented. The contribution of this thesis is a web application that uses the GPlates’ Application Programming Interface (API) to visualize global paleocurrents through time in an interactive way based …

Elevating Academic Administration: A Comprehensive Faculty Dashboard For Tracking Student Evaluations And Research, Musa M. Azeem

Senior Theses

The USC Faculty Dashboard is a web application designed to revolutionize how department heads, professors, and instructors monitor progress and make decisions, providing a centralized hub for efficient data storage and analysis. Currently, there’s a gap in tools tailored for department heads to concisely manage the performance of their department, which our platform aims to fill. The USC Faculty Dashboard offers easy access to upload and view student evaluation and research information, empowering department heads to evaluate the performance of faculty members and seamlessly track their research grants, publications, and expenditures. Furthermore, professors and instructors gain personalized performance analysis tools, …

Ur2m: Uncertainty And Resource-Aware Event Detection On Microcontrollers, Hong Jia, Young D. Kwon, Dong Ma, Nhat Pham, Lorena Qendro, Tam Vu, Cecilia Mascolo

Research Collection School Of Computing and Information Systems

Traditional machine learning techniques are prone to generating inaccurate predictions when confronted with shifts in the distribution of data between the training and testing phases. This vulnerability can lead to severe consequences, especially in applications such as mobile healthcare. Uncertainty estimation has the potential to mitigate this issue by assessing the reliability of a model's output. However, existing uncertainty estimation techniques often require substantial computational resources and memory, making them impractical for implementation on microcontrollers (MCUs). This limitation hinders the feasibility of many important on-device wearable event detection (WED) applications, such as heart attack detection. In this paper, we present …

Adaptive Neh With Constrained Nearest Neighbor Subtours For The Electric Vehicle Routing Problem With Time Windows, Andrew Struthers

All Master's Theses

The development of electric vehicles is currently considered one of the most innovative areas in manufacturing. Largely driven by the desire to reduce greenhouse emissions, electric vehicles are seen as a viable alternative to internal combustion engine cars. Starting from consumer cars, a dedicated effort is being made to translate this into commercial vehicles for freight and delivery. This research introduces a novel adaptive Nawaz, Enscore, Ham (NEH) algorithm with constrained nearest neighbor subtour (NEH-NN). This algorithm is tested on the standard benchmark problems in literature and used as a seed solution for the Genetic Algorithm (GA). The performance and …

Quantumeyes: Towards Better Interpretability Of Quantum Circuits, Shaolun Ruan, Qiang Guan, Paul Griffin, Ying Mao, Yong Wang

Research Collection School Of Computing and Information Systems

Quantum computing offers significant speedup compared to classical computing, which has led to a growing interest among users in learning and applying quantum computing across various applications. However, quantum circuits, which are fundamental for implementing quantum algorithms, can be challenging for users to understand due to their underlying logic, such as the temporal evolution of quantum states and the effect of quantum amplitudes on the probability of basis quantum states. To fill this research gap, we propose QuantumEyes, an interactive visual analytics system to enhance the interpretability of quantum circuits through both global and local levels. For the global-level analysis, …

Deconstructing The Software Factory: A Practical Application Of Interorganizational Network Analysis, Zachary O. Ryan, Mark Reith, Clay Koschnick

Faculty Publications

Over the past 5 years, the number of DoD software organizations that employ nontraditional organizational structures has increased. These organizations, commonly referred to as software factories, often employ the network-based organizational structures found within high-technology industries. This article details ways in which network analysis techniques can be used to create a big picture view of these nontraditional organizations. Drawing on methodologies employed by network researchers, the authors develop and present an interorganizational analysis process that highlights a program's social and economic structures. Following the case history approach, they demonstrate the applicability of this approach by analyzing an emergent DoD software …

Designing A Human-Centered Intelligent System To Monitor & Explain Abnormal Patterns Of Older Adults, Min Hun Lee, Daniel P. Siewiorek, Alexandre Bernardino

Research Collection School Of Computing and Information Systems

Older adult care technologies are increasingly explored to support the independent living of older adults by monitoring their abnormal activities and informing caregivers to provide intervention if necessary. However, the adoption of these technologies remains challenging due to several factors (e.g. lack of usability). In this work, we present a human-centered, intelligent system for older adult care. Our proposed designs of the system were created based on the findings from a focus group session with caregivers. This system monitors the abnormal activities of an older adult using wireless motion sensors and machine learning models. In addition, unlike previous work that …

Testsgd: Interpretable Testing Of Neural Networks Against Subtle Group Discrimination, Mengdi Zhang, Jun Sun, Jingyi Wang, Bing Sun

Research Collection School Of Computing and Information Systems

Discrimination has been shown in many machine learning applications, which calls for sufficient fairness testing before their deployment in ethic-relevant domains. One widely concerning type of discrimination, testing against group discrimination, mostly hidden, is much less studied, compared with identifying individual discrimination. In this work, we propose TestSGD, an interpretable testing approach which systematically identifies and measures hidden (which we call ‘subtle’) group discrimination of a neural network characterized by conditions over combinations of the sensitive attributes. Specifically, given a neural network, TestSGD first automatically generates an interpretable rule set which categorizes the input space into two groups. Alongside, TestSGD …

Visualized Algorithm Engineering On Two Graph Partitioning Problems, Zizhen Chen

Computer Science and Engineering Theses and Dissertations

Concepts of graph theory are frequently used by computer scientists as abstractions when modeling a problem. Partitioning a graph (or a network) into smaller parts is one of the fundamental algorithmic operations that plays a key role in classifying and clustering. Since the early 1970s, graph partitioning rapidly expanded for applications in wide areas. It applies in both engineering applications, as well as research. Current technology generates massive data (“Big Data”) from business interactions and social exchanges, so high-performance algorithms of partitioning graphs are a critical need.

This dissertation presents engineering models for two graph partitioning problems arising from completely …

Brif: A Novel And Efficient Implementation Of Random Forests Based On Bit Packing And Parallel Computing, Yanchao Liu

Industrial and Systems Engineering Faculty Research Publications

Random forests are powerful and popular machine learning methods. While general principles of tree induction are straightforward and well-understood, the numerous algorithmic treatments implemented in software tools, as well as their impacts on performance, are less familiar to most users. This paper introduces a new random forest toolkit (the ‘brif’ package in R and Python) along with its key algorithmic design features, and demonstrates the effects of the forest’s hyper-parameters such as the split search method, tree depth and the voting mechanism, on the classification performance. Summaries of benchmarking experiments are also presented. Results show that ‘brif’ stands out among …

Chatgpt As Metamorphosis Designer For The Future Of Artificial Intelligence (Ai): A Conceptual Investigation, Amarjit Kumar Singh (Library Assistant), Dr. Pankaj Mathur (Deputy Librarian)

Library Philosophy and Practice (e-journal)

Abstract

Purpose: The purpose of this research paper is to explore ChatGPT’s potential as an innovative designer tool for the future development of artificial intelligence. Specifically, this conceptual investigation aims to analyze ChatGPT’s capabilities as a tool for designing and developing near about human intelligent systems for futuristic used and developed in the field of Artificial Intelligence (AI). Also with the helps of this paper, researchers are analyzed the strengths and weaknesses of ChatGPT as a tool, and identify possible areas for improvement in its development and implementation. This investigation focused on the various features and functions of ChatGPT that …

Achieving High Map-Coverage Through Pattern Constraint Reduction, Yingquan Zhao, Zan Wang, Shuang Liu, Jun Sun, Junjie Chen, Xiang Chen

Research Collection School Of Computing and Information Systems

Testing multi-threaded programs is challenging due to the enormous space of thread interleavings. Recently, a code coverage criterion for multi-threaded programs called MAP-coverage has been proposed and shown to be effective for testing concurrent programs. Existing approaches for achieving high MAP-coverage are based on random testing with simple heuristics, which is ineffective in systematically triggering rare thread interleavings. In this study, we propose a novel approach called pattern constraint reduction (PCR), which employs optimized constraint solving to generate thread interleavings for high MAP-coverage. The idea is to iteratively encode and solve path conditions to generate thread interleavings which are guaranteed …

Dronlomaly: Runtime Detection Of Anomalous Drone Behaviors Via Log Analysis And Deep Learning, Lwin Khin Shar, Wei Minn, Nguyen Binh Duong Ta, Jianli Fan, Lingxiao Jiang, Daniel Wai Kiat Lim

Research Collection School Of Computing and Information Systems

Drones are increasingly popular and getting used in a variety of missions such as area surveillance, pipeline inspection, cinematography, etc. While the drone is conducting a mission, anomalies such as sensor fault, actuator fault, configuration errors, bugs in controller program, remote cyber- attack, etc., may affect the drone’s physical stability and cause serious safety violations such as crashing into the public. During a flight mission, drones typically log flight status and state units such as GPS coordinates, actuator outputs, accelerator readings, gyroscopic readings, etc. These log data may reflect the above-mentioned anomalies. In this paper, we propose a novel, deep …

Unoapi: Balancing Performance, Portability, And Productivity (P3) In Hpc Education, Konstantin Laufer, George K. Thiruvathukal

Computer Science: Faculty Publications and Other Works

oneAPI is a major initiative by Intel aimed at making it easier to program heterogeneous architectures used in high-performance computing using a unified application programming interface (API). While raising the abstraction level via a unified API represents a promising step for the current generation of students and practitioners to embrace high- performance computing, we argue that a curriculum of well- developed software engineering methods and well-crafted exem- plars will be necessary to ensure interest by this audience and those who teach them. We aim to bridge the gap by developing a curriculum—codenamed UnoAPI—that takes a more holistic approach by looking …

Gpgpu Microbenchmarking For Irregular Application Optimization, Dalton R. Winans-Pruitt

Theses and Dissertations

Irregular applications, such as unstructured mesh operations, do not easily map onto the typical GPU programming paradigms endorsed by GPU manufacturers, which mostly focus on maximizing concurrency for latency hiding. In this work, we show how alternative techniques focused on latency amortization can be used to control overall latency while requiring less concurrency. We used a custom-built microbenchmarking framework to test several GPU kernels and show how the GPU behaves under relevant workloads. We demonstrate that coalescing is not required for efficacious performance; an uncoalesced access pattern can achieve high bandwidth - even over 80% of the theoretical global memory …

Aligning Dual Disentangled User Representations From Ratings And Textual Content, Nhu Thuat Tran, Hady Wirawan Lauw

Research Collection School Of Computing and Information Systems

Classical recommendation methods typically render user representation as a single vector in latent space. Oftentimes, a user's interactions with items are influenced by several hidden factors. To better uncover these hidden factors, we seek disentangled representations. Existing disentanglement methods for recommendations are mainly concerned with user-item interactions alone. To further improve not only the effectiveness of recommendations but also the interpretability of the representations, we propose to learn a second set of disentangled user representations from textual content and to align the two sets of representations with one another. The purpose of this coupling is two-fold. For one benefit, we …

Monofacial Vs Bifacial Solar Photovoltaic Systems In Snowy Environments, Koami Soulemane Hayibo, Aliaksei Petsiuk, Pierce Mayville, Laura Brown, Joshua M. Pearce

Electrical and Computer Engineering Publications

There has been a recent surge in interest in the more accurate snow loss estimates for solar photovoltaic (PV) systems as large-scale deployments move into northern latitudes. Preliminary results show bifacial modules may clear snow faster than monofacial PV. This study analyzes snow losses on these two types of systems using empirical hourly data including energy, solar irradiation and albedo, and open-source image processing methods from images of the arrays in a northern environment in the winter. Projection transformations based on reference anchor points and snowless ground truth images provide reliable masking and optical distortion correction with fixed surveillance cameras. …