Artificial Intelligence and Robotics Commons^™

Short: Can Citations Tell Us About A Paper's Reproducibility? A Case Study Of Machine Learning Papers, Rochana R. Obadage, Sarah M. Rajtmajer, Jian Wu

Computer Science Faculty Publications

The iterative character of work in machine learning (ML) and artificial intelligence (AI) and reliance on comparisons against benchmark datasets emphasize the importance of reproducibility in that literature. Yet, resource constraints and inadequate documentation can make running replications particularly challenging. Our work explores the potential of using downstream citation contexts as a signal of reproducibility. We introduce a sentiment analysis framework applied to citation contexts from papers involved in Machine Learning Reproducibility Challenges in order to interpret the positive or negative outcomes of reproduction attempts. Our contributions include training classifiers for reproducibility-related contexts and sentiment analysis, and exploring correlations between …

Developing A Framework For Personalized Video-Based Quantum Information Science Education, Nikos Chrisochoides, Norou Diawara, Michail Giannakos

Computer Science Faculty Publications

This is a white paper on Workforce Development for Quantum Information Sciences (QIS) led by the Center for Real-Time Computing at Old Dominion University (ODU). We plan to investigate the potential of video lectures in supporting QIS. Specifically, we focus on following four objectives: (a) design a two-course series for both Master-level and PhD students; b) an upgrade of Experimental Lecture System (ELeSy) to test new, innovative, and transformative approaches for inclusive QIS education; c) design and implementation of a mixed-method systematic empirical study on the effects of video learning styles (in-person flipped classroom and voluntary video use) on graduate …

Enhancing Heart Disease Prediction With Reinforcement Learning And Data Augmentation, Gayathri R., Sangeetha S. K. B., Sandeep Kumar Mathivanan, Hariharan Rajadurai, Benjula Anbu Malar Mb, Saurav Mallik, Hong Qin

Computer Science Faculty Publications

The study presents a novel method to improve the prediction accuracy of cardiac disease by combining data augmentation techniques with reinforcement learning. The complex nature of cardiac data frequently presents challenges for traditional machine learning models, which results in subpar performance. In response, our fusion methodology improves predictive capabilities by augmenting data and utilizing reinforcement learning's skill at sequential decision-making. Our method predicts cardiac disease with an astounding 94 % accuracy rate, which is an outstanding result. This significant improvement outperforms existing techniques and shows a deeper comprehension of intricate data relationships. The amalgamation of reinforcement learning and data augmentation …

Bayesian Neural Netwok Variational Autoencoder Inverse Mapper (Bnn-Vaim) And Its Application In Compton Form Factors Extraction, Md Fayaz Bin Hossen, Tareq Alghamdi, Manal Almaeen, Yaohang Li

Computer Science Faculty Publications

We extend the Variational Autoencoder Inverse Mapper (VAIM) framework for the inverse problem of extracting Compton Form Factors (CFFs) from deeply virtual exclusive reactions, such as the unpolarized Deeply virtual exclusive scattering (DVCS) cross section. VAIM is an end-to-end deep learning framework to address the solution ambiguity issue in ill-posed inverse problems, which comprises of a forward mapper and a backward mapper to simulate the forward and inverse processes, respectively. In particular, we incorporate Bayesian Neural Network (BNN) into the VAIM architecture (BNN-VAIM) for uncertainty quantification. By sampling the weights and biases distributions of the BNN in the backward mapper …

Enhanced Skin Cancer Diagnosis Through Grid Search Algorithm-Optimized Deep Learning Models For Skin Lesion Analysis, Rudresh Pillai, Neha Sharma, Sheifali Gupta, Deepali Gupta, Sapna Juneja, Saurav Malik, Hong Qin, Mohammed S. Alqahtani, Amel Ksibi

Computer Science Faculty Publications

Skin cancer is a widespread and perilous disease that necessitates prompt and precise detection for successful treatment. This research introduces a thorough method for identifying skin lesions by utilizing sophisticated deep learning (DL) techniques. The study utilizes three convolutional neural networks (CNNs)-CNN1, CNN2, and CNN3-each assigned to a distinct categorization job. Task 1 involves binary classification to determine whether skin lesions are present or absent. Task 2 involves distinguishing between benign and malignant lesions. Task 3 involves multiclass classification of skin lesion images to identify the precise type of skin lesion from a set of seven categories. The most optimal …

The Combined Focal Loss And Dice Loss Function Improves The Segmentation Of Beta-Sheets In Medium-Resolution Cryo-Electron-Microscopy Density Maps, Yongcheng Mu, Thu Nguyen, Bryan Hawickhorst, Willy Wriggers, Jiangwen Sun, Jing He

Computer Science Faculty Publications

Although multiple neural networks have been proposed for detecting secondary structures from medium-resolution (5–10 Å) cryo-electron microscopy (cryo-EM) maps, the loss functions used in the existing deep learning networks are primarily based on cross-entropy loss, which is known to be sensitive to class imbalances. To monitor and tune the performance of various loss functions for the secondary structure detection problem, we investigated five loss functions: cross-entropy, Focal loss, Dice loss, and two combined loss functions. Using a U-Net architecture in our DeepSSETracer method and a dataset composed of 1,355 box-cropped atomic-structure/density-map pairs, we found that a newly designed loss function …

Exacfs - A Cil Method To Mitigate Catastrophic Forgetting, S. Balasubramanian, Sai Subramaniam M., Sai Sriram Talasu, Manepalli Pranav Phanindra Sai, Yedu P. Krishna, Darshan Gera, Ravi Mukkamala

Computer Science Faculty Publications

Deep neural networks (DNNs) excel at learning from static datasets but struggle with continual learning, where data arrives sequentially. Catastrophic forgetting, the phenomenon of forgetting previously learned knowledge, is a primary challenge. This paper introduces EXponentially Averaged Class-wise Feature Significance (EXACFS) to mitigate this issue in the class incremental learning (CIL) setting. By estimating the significance of model features for each learned class using loss gradients, gradually aging the significance through the incremental tasks and preserving the significant features through a distillation loss, EXACFS effectively balances remembering old knowledge (stability) and learning new knowledge (plasticity). Extensive experiments on CIFAR-100 and …

Dilf: Differentiable Rendering-Based Multi-View Image-Language Fusion For Zero-Shot 3d Shape Understanding, Xin Ning, Zaiyang Yu, Lusi Li, Weijun Li, Prayag Tiwari

Computer Science Faculty Publications

Zero-shot 3D shape understanding aims to recognize “unseen” 3D categories that are not present in training data. Recently, Contrastive Language–Image Pre-training (CLIP) has shown promising open-world performance in zero-shot 3D shape understanding tasks by information fusion among language and 3D modality. It first renders 3D objects into multiple 2D image views and then learns to understand the semantic relationships between the textual descriptions and images, enabling the model to generalize to new and unseen categories. However, existing studies in zero-shot 3D shape understanding rely on predefined rendering parameters, resulting in repetitive, redundant, and low-quality views. This limitation hinders the model’s …

A Chinese Power Text Classification Algorithm Based On Deep Active Learning, Song Deng, Qianliang Li, Renjie Dai, Siming Wei, Di Wu, Yi He, Xindong Wu

Computer Science Faculty Publications

The construction of knowledge graph is beneficial for grid production, electrical safety protection, fault diagnosis and traceability in an observable and controllable way. Highly-precision text classification algorithm is crucial to build a professional knowledge graph in power system. Unfortunately, there are a large number of poorly described and specialized texts in the power business system, and the amount of data containing valid labels in these texts is low. This will bring great challenges to improve the precision of text classification models. To offset the gap, we propose a classification algorithm for Chinese text in the power system based on deep …

Identifying Patterns For Neurological Disabilities By Integrating Discrete Wavelet Transform And Visualization, Soo Yeon Ji, Sampath Jayarathna, Anne M. Perrotti, Katrina Kardiasmenos, Dong Hyun Jeong

Computer Science Faculty Publications

Neurological disabilities cause diverse health and mental challenges, impacting quality of life and imposing financial burdens on both the individuals diagnosed with these conditions and their caregivers. Abnormal brain activity, stemming from malfunctions in the human nervous system, characterizes neurological disorders. Therefore, the early identification of these abnormalities is crucial for devising suitable treatments and interventions aimed at promoting and sustaining quality of life. Electroencephalogram (EEG), a non-invasive method for monitoring brain activity, is frequently employed to detect abnormal brain activity in neurological and mental disorders. This study introduces an approach that extends the understanding and identification of neurological disabilities …

Learning Optimal Inter-Class Margin Adaptively For Few-Shot Class-Incremental Learning Via Neural Collapse-Based Meta-Learning, Hang Ran, Weijun Li, Lusi Li, Songsong Tian, Xin Ning, Prayag Tiwari

Computer Science Faculty Publications

Few-Shot Class-Incremental Learning (FSCIL) aims to learn new classes incrementally with a limited number of samples per class. It faces issues of forgetting previously learned classes and overfitting on few-shot classes. An efficient strategy is to learn features that are discriminative in both base and incremental sessions. Current methods improve discriminability by manually designing inter-class margins based on empirical observations, which can be suboptimal. The emerging Neural Collapse (NC) theory provides a theoretically optimal inter-class margin for classification, serving as a basis for adaptively computing the margin. Yet, it is designed for closed, balanced data, not for sequential or few-shot …

Triphlapan: Predicting Hla Molecules Binding Peptides Based On Triple Coding Matrix And Transfer Learning, Meng Wang, Chuqi Lei, Jianxin Wang, Yaohang Li, Min Li

Computer Science Faculty Publications

Human leukocyte antigen (HLA) recognizes foreign threats and triggers immune responses by presenting peptides to T cells. Computationally modeling the binding patterns between peptide and HLA is very important for the development of tumor vaccines. However, it is still a big challenge to accurately predict HLA molecules binding peptides. In this paper, we develop a new model TripHLApan for predicting HLA molecules binding peptides by integrating triple coding matrix, BiGRU + Attention models, and transfer learning strategy. We have found the main interaction site regions between HLA molecules and peptides, as well as the correlation between HLA encoding and binding …

Can Large Language Models Discern Evidence For Scientific Hypotheses? Case Studies In The Social Sciences, Sai Koneru, Jian Wu, Sarah Rajtmajer

Computer Science Faculty Publications

Hypothesis formulation and testing are central to empirical research. A strong hypothesis is a best guess based on existing evidence and informed by a comprehensive view of relevant literature. However, with exponential increase in the number of scientific articles published annually, manual aggregation and synthesis of evidence related to a given hypothesis is a challenge. Our work explores the ability of current large language models (LLMs) to discern evidence in support or refute of specific hypotheses based on the text of scientific abstracts. We share a novel dataset for the task of scientific hypothesis evidencing using community-driven annotations of studies …

Artificial Intelligence For The Electron Ion Collider (Ai4eic), C. Allaire, R. Ammendola, E.-C. Aschenauer, M. Balandat, M. Battaglieri, J. Bernauer, M. Bondì, N. Branson, T. Britton, A. Butter, I. Chahrour, P. Chatagnon, E. Cisbani, E. W. Cline, S. Dash, C. Dean, W. Deconinck, A. Deshpande, M. Diefenthaler, R. Ent, C. Fanelli, M. Finger, M. Finger Jr., E. Fol, S. Furletov, Y. Gao, J. Giroux, N. C. Gunawardhana Waduge, O. Hassan, P. L. Hegde, R. J. Hernandez-Pinto, A. Hiller Blin, T. Horn, J. Huang, A. Jalotra, D. Jayakodige, B. Joo, M. Junaid, N. Kalantarians, P. Karande, B. Kriesten, R. Kunnawalkam Elayavalli, Y. Li, M. Lin, F. Liu, S. Liuti, G. Matousek, M. Mceneaney, D. Mcspadden, T. Menzo, T. Miceli, V. Mikuni, R. Montgomery, B. Nachman, R. R. Nair, J. Niestroy, S. A. Ochoa Oregon, J. Oleniacz, J. D. Osborn, C. Paudel, C. Pecar, C. Peng, G. N. Perdue, W. Phelps, M. L. Purschke, H. Rajendran, K. Rajput, Y. Ren, D. F. Renteria-Estrada, D. Richford, B. J. Roy, D. Roy, A. Saini, N. Sato, T. Satogata, G. Sborlini, M. Schram, D. Shih, J. Singh, R. Singh, A. Siodmok, J. Stevens, P. Stone, L. Suarez, K. Suresh, A. -N. Tawfik, F. Torales Acosta, N. Tran, R. Trotta, F. J. Twagirayezu, R. Tyson, S. Volkova, A. Vossen, E. Walter, D. Whiteson, M. Williams, S. Wu, N. Zachariou, P. Zurita

Computer Science Faculty Publications

The Electron-Ion Collider (EIC), a state-of-the-art facility for studying the strong force, is expected to begin commissioning its first experiments in 2028. This is an opportune time for artificial intelligence (AI) to be included from the start at this facility and in all phases that lead up to the experiments. The second annual workshop organized by the AI4EIC working group, which recently took place, centered on exploring all current and prospective application areas of AI for the EIC. This workshop is not only beneficial for the EIC, but also provides valuable insights for the newly established ePIC collaboration at EIC. …

An Ai-Based Framework For Translating American Sign Language To English And Vice Versa, Vijayendra D. Avina, Md Amiruzzaman, Stefanie Amiruzzaman, Linh B. Ngo, M. Ali Akber Dewan

Computer Science Faculty Publications

Abstract: In this paper, we propose a framework to convert American Sign Language (ASL) to English and English to ASL. Within this framework, we use a deep learning model along with the rolling average prediction that captures image frames from videos and classifies the signs from the image frames. The classified frames are then used to construct ASL words and sentences to support people with hearing impairments. We also use the same deep learning model to capture signs from the people with deaf symptoms and convert them into ASL words and English sentences. Based on this framework, we developed a …

Dfhic: A Dilated Full Convolution Model To Enhance The Resolution Of Hi-C Data, Bin Wang, Kun Liu, Yaohang Li, Jianxin Wang

Computer Science Faculty Publications

Motivation: Hi-C technology has been the most widely used chromosome conformation capture(3C) experiment that measures the frequency of all paired interactions in the entire genome, which is a powerful tool for studying the 3D structure of the genome. The fineness of the constructed genome structure depends on the resolution of Hi-C data. However, due to the fact that high-resolution Hi-C data require deep sequencing and thus high experimental cost, most available Hi-C data are in low-resolution. Hence, it is essential to enhance the quality of Hi-C data by developing the effective computational methods.

Results: In this work, we propose …

Mitigating Anomalous Electricity Consumption In Smart Cities Using An Ai-Based Stacked-Generalization Technique, Arshid Ali, Laiq Khan, Nadeem Javaid, Safdar Hussain Bouk, Abdulaziz Aldegheishem, Nabil Alrahjeh

Computer Science Faculty Publications

Energy management and efficient asset utilization play an important role in the economic development of a country. The electricity produced at the power station faces two types of losses from the generation point to the end user. These losses are technical losses (TL) and non-technical losses (NTL). TLs occurs due to the use of inefficient equipment. While NTLs occur due to the anomalous consumption of electricity by the customers, which happens in many ways; energy theft being one of them. Energy theft majorly happens to cut down on the electricity bills. These losses in the smart grid (SG) are the …

Msdrp: A Deep Learning Model Based On Multisource Data For Predicting Drug Response, Haochen Zhao, Xiaoyu Zhang, Qichang Zhao, Yaohang Li, Jianxin Wang

Computer Science Faculty Publications

Motivation: Cancer heterogeneity drastically affects cancer therapeutic outcomes. Predicting drug response in vitro is expected to help formulate personalized therapy regimens. In recent years, several computational models based on machine learning and deep learning have been proposed to predict drug response in vitro. However, most of these methods capture drug features based on a single drug description (e.g. drug structure), without considering the relationships between drugs and biological entities (e.g. target, diseases, and side effects). Moreover, most of these methods collect features separately for drugs and cell lines but fail to consider the pairwise interactions between drugs and cell …

An Approach To Developing Benchmark Datasets For Protein Secondary Structure Segmentation From Cryo-Em Density Maps, Thu Nguyen, Yongcheng Mu, Jiangwen Sun, Jing He

Computer Science Faculty Publications

More and more deep learning approaches have been proposed to segment secondary structures from cryo-electron density maps at medium resolution range (5--10Å). Although the deep learning approaches show great potential, only a few small experimental data sets have been used to test the approaches. There is limited understanding about potential factors, in data, that affect the performance of segmentation. We propose an approach to generate data sets with desired specifications in three potential factors - the protein sequence identity, structural contents, and data quality. The approach was implemented and has generated a test set and various training sets to study …

A Hybrid Deep Learning Approach For Crude Oil Price Prediction, Hind Aldabagh, Xianrong Zheng, Ravi Mukkamala

Computer Science Faculty Publications

Crude oil is one of the world’s most important commodities. Its price can affect the global economy, as well as the economies of importing and exporting countries. As a result, forecasting the price of crude oil is essential for investors. However, crude oil price tends to fluctuate considerably during significant world events, such as the COVID-19 pandemic and geopolitical conflicts. In this paper, we propose a deep learning model for forecasting the crude oil price of one-step and multi-step ahead. The model extracts important features that impact crude oil prices and uses them to predict future prices. The prediction model …

Charged Track Reconstruction With Artificial Intelligence For Clas12, Gagik Gavalian, Polykarpos Thomadakis, Angelos Angelopoulos, Nikos Chrisochoides

Computer Science Faculty Publications

In this paper, we present the results of charged particle track reconstruction in CLAS12 using artificial intelligence. In our approach, we use neural networks working together to identify tracks based on the raw signals in the Drift Chambers. A Convolutional Auto-Encoder is used to de-noise raw data by removing the hits that do not satisfy the patterns for tracks, and second Multi-Layer Perceptron is used to identify tracks from combinations of clusters in the drift chambers. Our method increases the tracking efficiency by 50% for multi-particle final states already conducted experiments. The de-noising results indicate that future experiments can run …

Identifying The Serious Clinical Outcomes Of Adverse Reactions To Drugs By A Multi-Task Deep Learning Framework, Haochen Zhao, Peng Ni, Qichang Zhao, Xiao Liang, Di Ai, Shannon Erhardt, Jun Wang, Yaohang Li, Jiianxin Wang

Computer Science Faculty Publications

Adverse Drug Reactions (ADRs) have a direct impact on human health. As continuous pharmacovigilance and drug monitoring prove to be costly and time-consuming, computational methods have emerged as promising alternatives. However, most existing computational methods primarily focus on predicting whether or not the drug is associated with an adverse reaction and do not consider the core issue of drug benefit-risk assessment-whether the treatment outcome is serious when adverse drug reactions occur. To this end, we categorize serious clinical outcomes caused by adverse reactions to drugs into seven distinct classes and present a deep learning framework, so-called GCAP, for predicting the …

Claimdistiller: Scientific Claim Extraction With Supervised Contrastive Learning, Xin Wei, Md Reshad Ul Hoque, Jian Wu, Jiang Li

Computer Science Faculty Publications

The growth of scientific papers in the past decades calls for effective claim extraction tools to automatically and accurately locate key claims from unstructured text. Such claims will benefit content-wise aggregated exploration of scientific knowledge beyond the metadata level. One challenge of building such a model is how to effectively use limited labeled training data. In this paper, we compared transfer learning and contrastive learning frameworks in terms of performance, time and training data size. We found contrastive learning has better performance at a lower cost of data across all models. Our contrastive-learning-based model ClaimDistiller has the highest performance, boosting …

Toward A Generative Modeling Analysis Of Clas Exclusive 2𝜋 Photoproduction, T. Alghamdi, Y. Alanazi, M. Battaglieri, Ł. Bibrzycki, A. V. Golda, A. N. Hiller Blin, E. L. Isupov, Y. Li, L. Marsicano, W. Melnitchouk, V. I. Mokeev, G. Montaña, A. Pilloni, N. Sato, A. P. Szczepaniak, T. Vittorini

Computer Science Faculty Publications

AI-supported algorithms, particularly generative models, have been successfully used in a variety of different contexts. This work employs a generative modeling approach to unfold detector effects specifically tailored for exclusive reactions that involve multiparticle final states. Our study demonstrates the preservation of correlations between kinematic variables in a multidimensional phase space. We perform a full closure test on two-pion photoproduction pseudodata generated with a realistic model in the kinematics of the Jefferson Lab CLAS g11 experiment. The overlap of different reaction mechanisms leading to the same final state associated with the CLAS detector’s nontrivial effects represents an ideal test case …

A Structure-Aware Generative Adversarial Network For Bilingual Lexicon Induction, Bocheng Han, Qian Tao, Lusi Li, Zhihao Xiong

Computer Science Faculty Publications

Bilingual lexicon induction (BLI) is the task of inducing word translations with a learned mapping function that aligns monolingual word embedding spaces in two different languages. However, most previous methods treat word embeddings as isolated entities and fail to jointly consider both the intra-space and inter-space topological relations between words. This limitation makes it challenging to align words from embedding spaces with distinct topological structures, especially when the assumption of isomorphism may not hold. To this end, we propose a novel approach called the Structure-Aware Generative Adversarial Network (SA-GAN) model to explicitly capture multiple topological structure information to achieve accurate …

An Ai-Based Framework For Studying Visual Diversity Of Urban Neighborhoods And Its Relationship With Socio-Demographic Variables, Md Amiruzzaman, Ye Zhao, Stefanie Amiruzzaman, Aryn C. Karpinski, Tsung Heng Wu

Computer Science Faculty Publications

This study presents a framework to study quantitatively geographical visual diversities of urban neighborhood from a large collection of street-view images using an Artificial Intelligence (AI)-based image segmentation technique. A variety of diversity indices are computed from the extracted visual semantics. They are utilized to discover the relationships between urban visual appearance and socio-demographic variables. This study also validates the reliability of the method with human evaluators. The methodology and results obtained from this study can potentially be used to study urban features, locate houses, establish services, and better operate municipalities.

Can Lethal Autonomous Weapons Be Just?, Noreen L. Herzfeld, Robert H. Latiff

Computer Science Faculty Publications

In 2018 the United States Department of Defense (DoD) created a new Joint Artificial Intelligence Center to study the adoption of AI by the military. Their strategy, outlined in a document entitled, “Harnessing AI to Advance Our Security and Prosperity,” proposes to accelerate the adoption of AI in the military by fostering a culture of experimentation and calculated risk taking, noting that AI will change the character of the future battlefield and, even more, the pace of battle. Is there any way to ensure that this future battlefield will be just? Can the age-old precepts of just warfare help guide …

Multi-User Eye-Tracking, Bhanuka Mahanama

Computer Science Faculty Publications

The human gaze characteristics provide informative cues on human behavior during various activities. Using traditional eye trackers, assessing gaze characteristics in the wild requires a dedicated device per participant and therefore is not feasible for large-scale experiments. In this study, we propose a commodity hardware-based multi-user eye-tracking system. We leverage the recent advancements in Deep Neural Networks and large-scale datasets for implementing our system. Our preliminary studies provide promising results for multi-user eye-tracking on commodity hardware, providing a cost-effective solution for large-scale studies.

Visual Descriptor Extraction From Patent Figure Captions: A Case Study Of Data Efficiency Between Bilstm And Transformer, Xin Wei, Jian Wu, Kehinde Ajayi, Diane Oyen

Computer Science Faculty Publications

Technical drawings used for illustrating designs are ubiquitous in patent documents, especially design patents. Different from natural images, these drawings are usually made using black strokes with little color information, making it challenging for models trained on natural images to recognize objects. To facilitate indexing and searching, we propose an effective and efficient visual descriptor model that extracts object names and aspects from patent captions to annotate benchmark patent figure datasets. We compared two state-of-the-art named entity recognition (NER) models and found that with a limited number of annotated samples, the BiLSTM-CRF model outperforms the Transformer model by a significant …

Camouflaged Poisoning Attack On Graph Neural Networks, Chao Jiang, Yi He, Richard Chapman, Hongyi Wu

Computer Science Faculty Publications

Graph neural networks (GNNs) have enabled the automation of many web applications that entail node classification on graphs, such as scam detection in social media and event prediction in service networks. Nevertheless, recent studies revealed that the GNNs are vulnerable to adversarial attacks, where feeding GNNs with poisoned data at training time can lead them to yield catastrophically devastative test accuracy. This finding heats up the frontier of attacks and defenses against GNNs. However, the prior studies mainly posit that the adversaries can enjoy free access to manipulate the original graph, while obtaining such access could be too costly in …