Computer Sciences Commons^™

Machine Learning Based Datacenter Monitoring Framework, Ravneet Singh Sidhu

Computer Science and Engineering Theses - Archive

Monitoring the health of large data centers is a major concern with the ever-increasing demand of grid/cloud computing and the higher need of computational power. In a High Performance Computing (HPC) environment, the need to maintain high availability makes monitoring tasks and hardware more daunting and demanding. As data centers grow it becomes hard to manage the complex interactions between different systems. Many open source systems have been implemented which give specific state of any individual machine using Nagios, Ganglia or Torque monitoring software. In this work we focus on the detection and prediction of data center anomalies by using …

Integrative Approaches For Large-Scale Biomedical Data Analysis, Ashis Kumer Biswas

Computer Science and Engineering Dissertations - Archive

Advancement of the Next Generation Sequencing (NGS), also known as the High Throughput Sequencing (HTS) technologies allow researchers investigate genome, transcriptome, or epigenome of any organism from any perspective, thereby contributing to the enrichment of the biomedical data repositories for many of the lesser known phenomena. The regulatory activities inside genome by the non-coding RNAs (ncRNAs), the transcribed product of the long-neglected "junk DNA" molecules is one such phenomenon. While large-scale data about the ncRNAs are becoming publicly available, the computational challenges are being imposed to the bioinformaticians for efficient mining to get reliable answers to few subtle questions. Given …

Predicting Malignant Nodules From Screening Ct Scans, Samuel Hawkins, Hua Wang, Ying Liu, Alberto Garcia, Olya Stringfield, Henry Krewer, Qiang Li, Dmitry Cherezov, Matthew Schabath, Lawrence O. Hall, Robert J. Gillies

Computer Science and Engineering Faculty Publications

Objectives

The aim of this study was to determine whether quantitative analyses (“radiomics”) of low-dose computed tomography lung cancer screening images at baseline can predict subsequent emergence of cancer.

Methods

Public data from the National Lung Screening Trial (ACRIN 6684) were assembled into two cohorts of 104 and 92 patients with screen-detected lung cancer and then matched with cohorts of 208 and 196 screening subjects with benign pulmonary nodules. Image features were extracted from each nodule and used to predict the subsequent emergence of cancer.

Results

The best models used 23 stable features in a random forests classifier and could …

Using Machine Learning To Predict Student Achievement On The State Of Texas Assessment Of Academic Readiness Examination In Charter Schools, Christopher D. Gonzalez

Theses and Dissertations

The purpose of this study was to research and develop a way to use machine learning algorithms (MLAs) to predict student achievement on the State of Texas Assessment of Academic Readiness (STAAR), specifically in the charter school setting. Charter schools have the disadvantage of a constant influx in students, so providing historical student data in order to analyze trends proves difficult. This study expands on previous research done on students in secondary and post-secondary school and determining features that indicate success in these settings. The data used is from the district of IDEA Public Schools who focuses on providing education …

Collective Personalized Change Classification With Multiobjective Search, Xin Xia, David Lo, Xinyu Wang, Xiaohu Yang

Research Collection School Of Computing and Information Systems

Many change classification techniques have been proposed to identify defect-prone changes. These techniques consider all developers' historical change data to build a global prediction model. In practice, since developers have their own coding preferences and behavioral patterns, which causes different defect patterns, a separate change classification model for each developer can help to improve performance. Jiang, Tan, and Kim refer to this problem as personalized change classification, and they propose PCC+ to solve this problem. A software project has a number of developers; for a developer, building a prediction model not only based on his/her change data, but also on …

Towards Deeper Understanding In Neuroimaging, Rex Devon Hjelm

Computer Science ETDs

Neuroimaging is a growing domain of research, with advances in machine learning having tremendous potential to expand understanding in neuroscience and improve public health. Deep neural networks have recently and rapidly achieved historic success in numerous domains, and as a consequence have completely redefined the landscape of automated learners, giving promise of significant advances in numerous domains of research. Despite recent advances and advantages over traditional machine learning methods, deep neural networks have yet to have permeated significantly into neuroscience studies, particularly as a tool for discovery. This dissertation presents well-established and novel tools for unsupervised learning which aid in …

Spiteful, One-Off, And Kind: Predicting Customer Feedback Behavior On Twitter, Agus Sulistya, Abhishek Sharma, David Lo

Research Collection School Of Computing and Information Systems

Social media provides a convenient way for customers to express their feedback to companies. Identifying different types of customers based on their feedback behavior can help companies to maintain their customers. In this paper, we use a machine learning approach to predict a customer’s feedback behavior based on her first feedback tweet. First, we identify a few categories of customers based on their feedback frequency and the sentiment of the feedback. We identify three main categories: spiteful, one-off, and kind. Next, we build a model to predict the category of a customer given her first feedback. We use profile and …

Data Analytics For Fault Localization In Complex Networks, Maggie X. Cheng, Wei Biao Wu

Computer Science Faculty Research & Creative Works

We consider the problem of identifying the source of failure in a network after receiving alarms or having observed symptoms. To locate the root cause accurately and timely in a large communication system is challenging because a single fault can often result in a large number of alarms, and multiple faults can occur concurrently. In this paper, we present a new fault localization method using a machine-learning approach. We propose to use logistic regression to study the correlation among network events based on end-to-end measurements. Then based on the regression model, we develop fault hypothesis that best explains the observed …

Multiple Imputation Of Missing Data In Structural Equation Models With Mediators And Moderators Using Gradient Boosted Machine Learning, Robert J. Milletich Ii

Psychology Theses & Dissertations

Mediation and moderated mediation models are two commonly used models for indirect effects analysis. In practice, missing data is a pervasive problem in structural equation modeling with psychological data. Multiple imputation (MI) is one method used to estimate model parameters in the presence of missing data, while accounting for uncertainty due to the missing data. Unfortunately, commonly used MI methods are not equipped to handle categorical variables or nonlinear variables such as interactions. In this study, we introduce a general MI framework that uses the Bayesian bootstrap (BB) method to generate posterior inferences for indirect effects and gradient boosted machine …

A Study Of The Impact Of Interaction Mechanisms And Population Diversity In Evolutionary Multiagent Systems, Sadat U. Chowdhury

Dissertations, Theses, and Capstone Projects

In the Evolutionary Computation (EC) research community, a major concern is maintaining optimal levels of population diversity. In the Multiagent Systems (MAS) research community, a major concern is implementing effective agent coordination through various interaction mechanisms. These two concerns coincide when one is faced with Evolutionary Multiagent Systems (EMAS).

This thesis demonstrates a methodology to study the relationship between interaction mechanisms, population diversity, and performance of an evolving multiagent system in a dynamic, real-time, and asynchronous environment. An open sourced extensible experimentation platform is developed that allows plug-ins for evolutionary models, interaction mechanisms, and genotypical encoding schemes beyond the one …

A Novel Machine Learning Classifier Based On A Qualia Modeling Agent (Qma), Sandra L. Vaughan

Theses and Dissertations

This dissertation addresses a problem found in supervised machine learning (ML) classification, that the target variable, i.e., the variable a classifier predicts, has to be identified before training begins and cannot change during training and testing. This research develops a computational agent, which overcomes this problem. The Qualia Modeling Agent (QMA) is modeled after two cognitive theories: Stanovich's tripartite framework, which proposes learning results from interactions between conscious and unconscious processes; and, the Integrated Information Theory (IIT) of Consciousness, which proposes that the fundamental structural elements of consciousness are qualia. By modeling the informational relationships of qualia, the QMA allows …

Creating And Automatically Grading Annotated Questions, Alicia Crowder Wood

Theses and Dissertations

We have created a question type that allows teachers to easily create questions, helps provide an intuitive user experience for students to take questions, and reduces the time it currently takes teachers to grade and provide feedback to students. This question type, or an "annotated" question, will allow teachers to test students' knowledge in a particular subject area by having students "annotate" or mark text and video sources to answer questions. Through user testing we determined that overall the interface and the implemented system decrease the time it would take a teacher to grade annotated quiz questions. However, there are …

Soft Confidence-Weighted Learning, Jialei Wang, Peilin Zhao, Hoi, Steven C. H.

Research Collection School Of Computing and Information Systems

Online learning plays an important role in many big datamining problems because of its high efficiency and scalability. In theliterature, many online learning algorithms using gradient information havebeen applied to solve online classification problems. Recently, more effectivesecond-order algorithms have been proposed, where the correlation between thefeatures is utilized to improve the learning efficiency. Among them,Confidence-Weighted (CW) learning algorithms are very effective, which assumethat the classification model is drawn from a Gaussian distribution, whichenables the model to be effectively updated with the second-order informationof the data stream. Despite being studied actively, these CW algorithms cannothandle nonseparable datasets and noisy datasets very …

Real Time Activity Recognition Of Treadmill Usage Via Machine Learning, Nathan Blank, Matt Buckner, Christian Owen, Anna Scott

Rose-Hulman Undergraduate Research Publications

Our objective is to provide real-time classification of treadmill usage patterns based on accelerometer and magnetometer measurements. We collected data from treadmills in the Rose-Hulman Student Recreation Center (SRC) using Shimmer3 sensor units. We identified useful data features and classifiers for predicting treadmill usage patterns. We also prototyped a proof of concept wireless, real-time classification system.

Classifying Pattern Formation In Materials Via Machine Learning, Lukasz Burzawa, Shuo Liu, Erica W. Carlson

The Summer Undergraduate Research Fellowship (SURF) Symposium

Scanning probe experiments such as scanning tunneling microscopy (STM) and atomic force microscopy (AFM) on strongly correlated materials often reveal complex pattern formation that occurs on multiple length scales. We have shown in two disparate correlated materials that the pattern formation is driven by proximity to a disorder-driven critical point. We developed new analysis concepts and techniques that relate the observed pattern formation to critical exponents by analyzing the geometry and statistics of clusters observed in these experiments and converting that information into critical exponents. Machine learning algorithms can be helpful correlating data from scanning probe experiments to theoretical models …

Personalization And Data Relation Exploration Using Predictive Analytics For The Production And Distributed Analysis System (Panda), Mikhail Titov

Computer Science and Engineering Dissertations - Archive

Efficient data distribution among computing centers is one of the biggest challenges in large-scale scientific distributed computing systems. Such data distribution issues include: i) the rational utilization of storage and computing resources, ii) the minimization of the completion time for data processing (which requires a reduction in redundant data transfers, and intelligent allocation of processing tasks), and iii) user experience enhancement, i.e., availability and fast access to the desired data, and discovery of new relevant data. In the literature and in practice, there have been significant new approaches to the improvement of workflow management to address the above described issues, …

A Study Of Security Issues Of Mobile Apps In The Android Platform Using Machine Learning Approaches, Lei Cen

Open Access Dissertations

Mobile app poses both traditional and new potential threats to system security and user privacy. There are malicious apps that may do harm to the system, and there are mis-behaviors of apps, which are reasonable and legal when not abused, yet may lead to real threats otherwise. Moreover, due to the nature of mobile apps, a running app in mobile devices may be only part of the software, and the server side behavior is usually not covered by analysis. Therefore, direct analysis on the app itself may be incomplete and additional sources of information are needed. In this dissertation, we …

Data Driven Low-Bandwidth Intelligent Control Of A Jet Engine Combustor, Nathan L. Toner

Open Access Dissertations

This thesis introduces a low-bandwidth control architecture for navigating the input space of an un-modeled combustor system between desired operating conditions while avoiding regions of instability and blow-out. An experimental procedure is discussed for identifying regions of instability and gathering sufficient data to build a data-driven model of the system's operating modes. Regions of instability and blow-out are identified experimentally and a data-driven operating point classifier is designed. This classifier acts as a map of the operating space of the combustor, indicating regions in which the flame is in a "good" or "bad" operating mode. A data-driven predictor is also …

Social Sentiment And Stock Trading Via Mobile Phones, Kwansoo Kim, Sang Yong Lee, Robert John Kauffman

Research Collection School Of Computing and Information Systems

What happens when uninformed investors trade stocks via mobile phones? Do they react to social sentiment differently than more informed traders in traditional trading? Based on 16,817 data observations and econometric analysis for the trading of 251 equities in Korea over 39 days, we present evidence of herding behavior among uninformed traders in the mobile channel. The results indicate that mobile traders seem more easily swayed by changing social sentiment. In addition, stock trading in the traditional channel probably influences sentiment formation in the market overall. Mobile traders follow signals in social media suggesting that they engage in less beneficial …

A Framework For Collecting, Extracting And Managing Event Identity Information From Textual Content In Social Media, Debanjan Mahata

Theses and Dissertations

With the popularity of social media platforms such as Facebook, Twitter and Google Plus, there has been voluminous growth in the digital footprints of real-life events on the Internet. The user-generated colloquial and concise textual content related to different types of real-life events, available in these websites, acts as an extremely useful source for researchers and organizations for extracting valuable and insightful information. There has been significant improvement in natural language processing techniques for mining formal and long textual content commonly found in newspapers. It is still a challenging task to mine textual information from the social media channels producing …

Machine Learning Methods For Brain Image Analysis, Ahmed Fakhry

Computer Science Theses & Dissertations

Understanding how the brain functions and quantifying compound interactions between complex synaptic networks inside the brain remain some of the most challenging problems in neuroscience. Lack or abundance of data, shortage of manpower along with heterogeneity of data following from various species all served as an added complexity to the already perplexing problem. The ability to process vast amount of brain data need to be performed automatically, yet with an accuracy close to manual human-level performance. These automated methods essentially need to generalize well to be able to accommodate data from different species. Also, novel approaches and techniques are becoming …

Designing Human-Centered Collective Intelligence, Ivor Addo

Dissertations (1934 -)

Human-Centered Collective Intelligence (HCCI) is an emergent research area that seeks to bring together major research areas like machine learning, statistical modeling, information retrieval, market research, and software engineering to address challenges pertaining to deriving intelligent insights and solutions through the collaboration of several intelligent sensors, devices and data sources. An archetypal contextual CI scenario might be concerned with deriving affect-driven intelligence through multimodal emotion detection sources in a bid to determine the likability of one movie trailer over another. On the other hand, the key tenets to designing robust and evolutionary software and infrastructure architecture models to address cross-cutting …

Where Is The Goldmine? Finding Promising Business Locations Through Facebook Data Analytics, Jovian Lin, Richard Oentaryo, Ee-Peng Lim, Casey Vu, Adrian Vu, Agus Kwee

Research Collection School Of Computing and Information Systems

If you were to open your own cafe, would you not want to effortlessly identify the most suitable location to set up your shop? Choosing an optimal physical location is a critical decision for numerous businesses, as many factors contribute to the final choice of the location. In this paper, we seek to address the issue by investigating the use of publicly available Facebook Pages data-which include user "check-ins", types of business, and business locations-to evaluate a user-selected physical location with respect to a type of business. Using a dataset of 20,877 food businesses in Singapore, we conduct analysis of …

Machine Learning Methods For Medical And Biological Image Computing, Rongjian Li

Computer Science Theses & Dissertations

Medical and biological imaging technologies provide valuable visualization information of structure and function for an organ from the level of individual molecules to the whole object. Brain is the most complex organ in body, and it increasingly attracts intense research attentions with the rapid development of medical and bio-logical imaging technologies. A massive amount of high-dimensional brain imaging data being generated makes the design of computational methods for efficient analysis on those images highly demanded. The current study of computational methods using hand-crafted features does not scale with the increasing number of brain images, hindering the pace of scientific discoveries …

Determining The Effectiveness Of Soil Treatment On Plant Stress Using Smart-Phone Cameras, Anurag Panwar

USF Tampa Graduate Theses and Dissertations

Plants are vital to the health of our biosphere, and effectively sustaining their growth is fundamental to the existence of life on this planet. A critical aspect, which decides the sustainability of plant growth is the quality of soil. All other things being fixed, the quality of soil greatly impacts the plant stress, which in turn impacts overall health. Although plant stress manifests in many ways, one of the clearest indicators are colors of the leaves. In this thesis, we conducted an experimental study in a greenhouse for detecting plant stress caused by nutrient deficienceies in soil using smartphone cameras, …

Categorizing Blog Spam, Brandon Bevans

Master's Theses

The internet has matured into the focal point of our era. Its ecosystem is vast, complex, and in many regards unaccounted for. One of the most prevalent aspects of the internet is spam. Similar to the rest of the internet, spam has evolved from simply meaning ‘unwanted emails’ to a blanket term that encompasses any unsolicited or illegitimate content that appears in the wide range of media that exists on the internet.

Many forms of spam permeate the internet, and spam architects continue to develop tools and methods to avoid detection. On the other side, cyber security engineers continue to …

Exploring Data Mining Techniques For Tree Species Classification Using Co-Registered Lidar And Hyperspectral Data, Julia K. Marrs

Theses and Dissertations

NASA Goddard’s LiDAR, Hyperspectral, and Thermal imager provides co-registered remote sensing data on experimental forests. Data mining methods were used to achieve a final tree species classification accuracy of 68% using a combined LiDAR and hyperspectral dataset, and show promise for addressing deforestation and carbon sequestration on a species-specific level.

Revelation Of Yin-Yang Balance In Microbial Cell Factories By Data Mining, Flux Modeling, And Metabolic Engineering, Gang Wu

McKelvey School of Engineering Graduate Student Theses & Dissertations

The long-held assumption of never-ending rapid growth in biotechnology and especially in synthetic biology has been recently questioned, due to lack of substantial return of investment. One of the main reasons for failures in synthetic biology and metabolic engineering is the metabolic burdens that result in resource losses. Metabolic burden is defined as the portion of a host cells resources either energy molecules (e.g., NADH, NADPH and ATP) or carbon building blocks (e.g., amino acids) that is used to maintain the engineered components (e.g., pathways). As a result, the effectiveness of synthetic biology tools heavily dependents on cell capability to …

Comparison Of Machine Learning Algorithms In Suggesting Candidate Edges To Construct A Query On Heterogeneous Graphs, Rohit Ravi Kumar Bhoopalam

Computer Science and Engineering Theses - Archive

Querying graph data can be difficult as it requires the user to have knowledge of the underlying schema and the query language. Visual query builders allow users to formulate the intended query by drawing nodes and edges of the query graph, which can be translated into a database query. Visual query builders help users formulate the query without requiring the user to have knowledge of the query language and the underlying schema. To the best of our knowledge, none of the currently available visual query builders suggest users what nodes/edges to include into their query graph. We provide suggestions to …

Exploring Privacy Leakage From The Resource Usage Patterns Of Mobile Apps, Amin Rois Sinung Nugroho

Graduate Theses and Dissertations

Due to the popularity of smart phones and mobile apps, a potential privacy risk with the usage of mobile apps is that, from the usage information of mobile apps (e.g., how many hours a user plays mobile games in each day), private information about a user’s living habits and personal activities can be inferred. To assess this risk, this thesis answers the following research question: can the type of a mobile app (e.g., email, web browsing, mobile game, music streaming, etc.) used by a user be inferred from the resource (e.g., CPU, memory, network, etc.) usage patterns of the mobile …