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2014

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Articles 211 - 240 of 1965

Full-Text Articles in Computer Sciences

Vireo-Tno @ Trecvid 2014: Multimedia Event Detection And Recounting (Med And Mer), Chong-Wah Ngo, Yi-Jie Lu, Hao Zhang, Ting Yao, Chun-Chet Tan, Lei Pang, Maaike De Boer, John Schavemaker, Klamer Schutte, Wessel Kraaij Nov 2014

Vireo-Tno @ Trecvid 2014: Multimedia Event Detection And Recounting (Med And Mer), Chong-Wah Ngo, Yi-Jie Lu, Hao Zhang, Ting Yao, Chun-Chet Tan, Lei Pang, Maaike De Boer, John Schavemaker, Klamer Schutte, Wessel Kraaij

Research Collection School Of Computing and Information Systems

This paper presents an overview and comparative analysis of our systems designed for TRECVID 2014 [1] multimedia event detection (MED) and recounting (MER) tasks, including all sub-tasks for Pre-Specified (PS) event detection, all sub-tasks except 100Ex for Ad-Hoc (AH) event detection, and 010Ex sub-task for both PS and AH event recounting. Multimedia Event Detection (MED) : Our main focus for the MED task is on the study of a new zero-example system, which aims to solve the 000Ex and SQ problems. The system can run either fully automatically or semi-automatically. Specifically, we test the automatic run in 000Ex submission and …


Predicting Effectiveness Of Ir-Based Bug Localization Techniques, Tien-Duy B. Le, Ferdian Thung, David Lo Nov 2014

Predicting Effectiveness Of Ir-Based Bug Localization Techniques, Tien-Duy B. Le, Ferdian Thung, David Lo

Research Collection School Of Computing and Information Systems

Recently, many information retrieval (IR) based bug localization approaches have been proposed in the literature. These approaches use information retrieval techniques to process a textual bug report and a collection of source code files to find buggy files. They output a ranked list of files sorted by their likelihood to contain the bug. Recent approaches can achieve reasonable accuracy, however, even a state-of-the-art bug localization tool outputs many ranked lists where buggy files appear very low in the lists. This potentially causes developers to distrust bug localization tools. Parnin and Orso recently conduct a user study and highlight that developers …


Semantics-Aware Android Malware Classification Using Weighted Contextual Api Dependency Graphs, Mu Zhang, Yue Duan, Heng Yin, Zhiruo Zhao Nov 2014

Semantics-Aware Android Malware Classification Using Weighted Contextual Api Dependency Graphs, Mu Zhang, Yue Duan, Heng Yin, Zhiruo Zhao

Research Collection School Of Computing and Information Systems

The drastic increase of Android malware has led to a strong interest in developing methods to automate the malware analysis process. Existing automated Android malware detection and classification methods fall into two general categories: 1) signature-based and 2) machine learning-based. Signature-based approaches can be easily evaded by bytecode-level transformation attacks. Prior learning-based works extract features from application syntax, rather than program semantics, and are also subject to evasion. In this paper, we propose a novel semantic-based approach that classifies Android malware via dependency graphs. To battle transformation attacks, we extract a weighted contextual API dependency graph as program semantics to …


Hybrid Euclidean-And-Riemannian Metric Learning For Image Set Classification, Zhiwu Huang, R. Wang, S. Shan, X. Chen Nov 2014

Hybrid Euclidean-And-Riemannian Metric Learning For Image Set Classification, Zhiwu Huang, R. Wang, S. Shan, X. Chen

Research Collection School Of Computing and Information Systems

We propose a novel hybrid metric learning approach to combine multiple heterogenous statistics for robust image set classification. Specifically, we represent each set with multiple statistics – mean, covariance matrix and Gaussian distribution, which generally complement each other for set modeling. However, it is not trivial to fuse them since the mean vector with dd-dimension often lies in Euclidean space RdRd, whereas the covariance matrix typically resides on Riemannian manifold Sym+dSymd+. Besides, according to information geometry, the space of Gaussian distribution can be embedded into another Riemannian manifold Sym+d+1Symd+1+. To fuse these statistics from heterogeneous spaces, we propose a Hybrid …


Organizing Video Search Results To Adapted Semantic Hierarchies For Topic-Based Browsing, Jiajun Wang, Yu-Gang Jiang, Qiang Wang, Kuiyuan Yang, Chong-Wah Ngo Nov 2014

Organizing Video Search Results To Adapted Semantic Hierarchies For Topic-Based Browsing, Jiajun Wang, Yu-Gang Jiang, Qiang Wang, Kuiyuan Yang, Chong-Wah Ngo

Research Collection School Of Computing and Information Systems

Organizing video search results into semantically structured hierarchies can greatly improve the efficiency of browsing complex query topics. Traditional hierarchical clustering techniques are inadequate since they lack the ability to generate semantically interpretable structures. In this paper, we introduce an approach to organize video search results to an adapted semantic hierarchy. As many hot search topics such as celebrities and famous cities have Wikipedia pages where hierarchical topic structures are available, we start from the Wikipedia hierarchies and adjust the structures according to the characteristics of the returned videos from a search engine. Ordinary clustering based on textual information of …


Vireo @ Trecvid 2014: Instance Search And Semantic Indexing, Wei Zhang, Hao Zhang, Ting Yao, Yijie Lu, Jingjing Chen, Chong-Wah Ngo Nov 2014

Vireo @ Trecvid 2014: Instance Search And Semantic Indexing, Wei Zhang, Hao Zhang, Ting Yao, Yijie Lu, Jingjing Chen, Chong-Wah Ngo

Research Collection School Of Computing and Information Systems

This paper summarizes the following two tasks participated by VIREO group: instance search and semantic indexing. We will present our approaches and analyze the results obtained in TRECVID 2014 benchmark evaluation


Traccs: Trajectory-Aware Coordinated Urban Crowd-Sourcing, Cen Chen, Shih-Fen Cheng, Aldy Gunawan, Archan Misra, Koustuv Dasgupta, Deepthi Chander Nov 2014

Traccs: Trajectory-Aware Coordinated Urban Crowd-Sourcing, Cen Chen, Shih-Fen Cheng, Aldy Gunawan, Archan Misra, Koustuv Dasgupta, Deepthi Chander

Research Collection School Of Computing and Information Systems

We investigate the problem of large-scale mobile crowd-tasking, where a large pool of citizen crowd-workers are used to perform a variety of location-specific urban logistics tasks. Current approaches to such mobile crowd-tasking are very decentralized: a crowd-tasking platform usually provides each worker a set of available tasks close to the worker's current location; each worker then independently chooses which tasks she wants to accept and perform. In contrast, we propose TRACCS, a more coordinated task assignment approach, where the crowd-tasking platform assigns a sequence of tasks to each worker, taking into account their expected location trajectory over a wider time …


Online Transfer Learning, Peilin Zhao, Steven C. H. Hoi, Jialei Wang, Bin Li Nov 2014

Online Transfer Learning, Peilin Zhao, Steven C. H. Hoi, Jialei Wang, Bin Li

Research Collection School Of Computing and Information Systems

This paper investigates a new machine learning framework of Online Transfer Learning (OTL), which aims to attack an online learning task on a target domain by transferring knowledge from some source domain. We do not assume data in the target domain follows the same distribution as that in the source domain, and the motivation of our work is to enhance a supervised online learning task on a target domain by exploiting the existing knowledge that had been learnt from training data in source domains. OTL is in general a challenging problem since data in both source and target domains not …


Generative Modeling Of Entity Comparisons In Text, Maksim Tkachenko, Hady W. Lauw Nov 2014

Generative Modeling Of Entity Comparisons In Text, Maksim Tkachenko, Hady W. Lauw

Research Collection School Of Computing and Information Systems

Users frequently rely on online reviews for decision making. In addition to allowing users to evaluate the quality of individual products, reviews also support comparison shopping. One key user activity is to compare two (or more) products based on a specific aspect. However, making a comparison across two different reviews, written by different authors, is not always equitable due to the different standards and preferences of individual authors. Therefore, we focus instead on comparative sentences, whereby two products are compared directly by a review author within a single sentence. We study the problem of comparative relation mining. Given a set …


Buglocalizer: Integrated Tool Support For Bug Localization, Ferdian Thung, Tien-Duy B. Le, Pavneet Singh Kochhar, David Lo Nov 2014

Buglocalizer: Integrated Tool Support For Bug Localization, Ferdian Thung, Tien-Duy B. Le, Pavneet Singh Kochhar, David Lo

Research Collection School Of Computing and Information Systems

To manage bugs that appear in a software, developers often make use of a bug tracking system such as Bugzilla. Users can report bugs that they encounter in such a system. Whenever a user reports a new bug report, developers need to read the summary and description of the bug report and manually locate the buggy files based on this information. This manual process is often time consuming and tedious. Thus, a number of past studies have proposed bug localization techniques to automatically recover potentially buggy files from bug reports. Unfortunately, none of these techniques are integrated to bug tracking …


Historical Traffic-Tolerant Paths In Road Networks, Pui Hang Li, Man Lung Yiu, Kyriakos Mouratidis Nov 2014

Historical Traffic-Tolerant Paths In Road Networks, Pui Hang Li, Man Lung Yiu, Kyriakos Mouratidis

Research Collection School Of Computing and Information Systems

Historical traffic information is valuable for transportation analysis and planning, as well as for route search services. In view of these applications, we propose the k traffic-tolerant paths problem (TTP) on road networks, which takes a source-destination pair and historical traffic information as input, and returns k paths that minimize the aggregate (historical) travel time. Unlike the shortest path problem, the TTP problem has a combinatorial search space that renders the optimal solution expensive to compute. We propose an exact algorithm and a heuristic algorithm for this problem. Experiments on real traffic data demonstrate the effectiveness of TTP paths and …


Dynamic Clustering Of Contextual Multi-Armed Bandits, Trong T. Nguyen, Hady W. Lauw Nov 2014

Dynamic Clustering Of Contextual Multi-Armed Bandits, Trong T. Nguyen, Hady W. Lauw

Research Collection School Of Computing and Information Systems

With the prevalence of the Web and social media, users increasingly express their preferences online. In learning these preferences, recommender systems need to balance the trade-off between exploitation, by providing users with more of the "same", and exploration, by providing users with something "new" so as to expand the systems' knowledge. Multi-armed bandit (MAB) is a framework to balance this trade-off. Most of the previous work in MAB either models a single bandit for the whole population, or one bandit for each user. We propose an algorithm to divide the population of users into multiple clusters, and to customize the …


Modloc: Localizing Multiple Objects In Dynamic Indoor Environment, Xiaonan Guo, Dian Zhang, Kaishun Wu, Lionel M. Ni Nov 2014

Modloc: Localizing Multiple Objects In Dynamic Indoor Environment, Xiaonan Guo, Dian Zhang, Kaishun Wu, Lionel M. Ni

Research Collection School Of Computing and Information Systems

Radio frequency (RF) based technologies play an important role in indoor localization, since Radio Signal Strength (RSS) can be easily measured by various wireless devices without additional cost. Among these, radio map based technologies (also referred as fingerprinting technologies) are attractive due to high accuracy and easy deployment. However, these technologies have not been extensively applied on real environment for two fatal limitations. First, it is hard to localize multiple objects. When the number of target objects is unknown, constructing a radio map of multiple objects is almost impossible. Second, environment changes will generate different multipath signals and severely disturb …


Imagespirit: Verbal Guided Image Parsing, Ming-Ming Cheng, Shuai Zheng, Wen-Yan Lin, Vibhav Vineet, Paul Sturgess, Nigel Crook, Niloy J. Mitra, Philip Torr Nov 2014

Imagespirit: Verbal Guided Image Parsing, Ming-Ming Cheng, Shuai Zheng, Wen-Yan Lin, Vibhav Vineet, Paul Sturgess, Nigel Crook, Niloy J. Mitra, Philip Torr

Research Collection School Of Computing and Information Systems

Humans describe images in terms of nouns and adjectives while algorithms operate on images represented as sets of pixels. Bridging this gap between how humans would like to access images versus their typical representation is the goal of image parsing, which involves assigning object and attribute labels to pixels. In this article we propose treating nouns as object labels and adjectives as visual attribute labels. This allows us to formulate the image parsing problem as one of jointly estimating per-pixel object and attribute labels from a set of training images. We propose an efficient (interactive time) solution. Using the extracted …


Band Selection For Hyperspectral Images Using Probabilistic Memetic Algorithm, Liang Feng, Ah-Hwee Tan, Meng-Hiot Lim, Si Wei Jiang Nov 2014

Band Selection For Hyperspectral Images Using Probabilistic Memetic Algorithm, Liang Feng, Ah-Hwee Tan, Meng-Hiot Lim, Si Wei Jiang

Research Collection School Of Computing and Information Systems

Band selection plays an important role in identifying the most useful and valuable information contained in the hyperspectral images for further data analysis such as classification, clustering, etc. Memetic algorithm (MA), among other metaheuristic search methods, has been shown to achieve competitive performances in solving the NP-hard band selection problem. In this paper, we propose a formal probabilistic memetic algorithm for band selection, which is able to adaptively control the degree of global exploration against local exploitation as the search progresses. To verify the effectiveness of the proposed probabilistic mechanism, empirical studies conducted on five well-known hyperspectral images against two …


An Ecological Model For Digital Platforms Maintenance And Evolution, Paolo Rocchi, Paolo Spagnoletti, Subhajit Datta Nov 2014

An Ecological Model For Digital Platforms Maintenance And Evolution, Paolo Rocchi, Paolo Spagnoletti, Subhajit Datta

Research Collection School Of Computing and Information Systems

The maintenance of software products has been studied extensively in both software engineering and management information systems. Such studies are mainly focused on the activities that take place prior to starting the maintenance phase. Their contribution is either related to the improvement of software quality or to validating contingency models for reducing maintenance efforts. The continuous maintenance philosophy suggests to shift the attention within the maintenance phase for better coping with the evolutionary trajectories of digital platforms. In this paper, we examine the maintenance process of a digital platform from the perspective of the software vendor. Based on our empirical …


Rapid: A Toolkit For Reliability Analysis Of Non-Deterministic Systems, Lin Gui, Jun Sun, Yang Liu, Truong Khanh Nguyen, Jin Song Dong Dong Nov 2014

Rapid: A Toolkit For Reliability Analysis Of Non-Deterministic Systems, Lin Gui, Jun Sun, Yang Liu, Truong Khanh Nguyen, Jin Song Dong Dong

Research Collection School Of Computing and Information Systems

Non-determinism in concurrent or distributed software systems (i.e., various possible execution orders among different distributed components) presents new challenges to the existing reliability analysis methods based on Markov chains. In this work, we present a toolkit RaPiD for the reliability analysis of non-deterministic systems. Taking Markov decision process as reliability model, RaPiD can help in the analysis of three fundamental and rewarding aspects regarding software reliability. First, to have reliability assurance on a system, RaPiD can synthesize the overall system reliability given the reliability values of system components. Second, given a requirement on the overall system reliability, RaPiD can distribute …


Developer Involvement Considered Harmful? An Empirical Examination Of Android Bug Resolution Times, Subhajit Datta, Proshanta Sarkar, Subhashis Majumder Nov 2014

Developer Involvement Considered Harmful? An Empirical Examination Of Android Bug Resolution Times, Subhajit Datta, Proshanta Sarkar, Subhashis Majumder

Research Collection School Of Computing and Information Systems

In large scale software development ecosystems, there is a common perception that higher developer involvement leads to faster resolution of bugs. This is based on conjectures around more ``eyeballs" making bugs "shallow" -- whose validity and applicability are not without dispute. In this paper, we posit that the level of developer attention as well as its extent of diversity influence how quickly bugs get resolved. We report results from a study of 1,000+ Android bugs. We find statistically significant evidence that attention and diversity have contrasting relationships with the resolution time of bugs, even after controlling for factors such as …


K-Sketch: Digital Storytelling With Animation Sketches, Richard Christopher Davis, Nur Camellia Binte Zakaria Nov 2014

K-Sketch: Digital Storytelling With Animation Sketches, Richard Christopher Davis, Nur Camellia Binte Zakaria

Research Collection School Of Computing and Information Systems

K-Sketch gives novice animators an easy way to tell stories with animation sketches. It relies on users’ intuitive sense of space and time, and makes animation easy through the use of sketching and demonstration. Our studies have shown that people take naturally to telling stories with K-Sketch, and it is particularly helpful for exploring the timing of events. We also found that K-Sketch is a good collaborative medium for telling stories. In this demonstration we will show how K-Sketch works and explain how these advantages are realized in practice.


A First Look At Global News Coverage Of Disasters By Using The Gdelt Dataset, Haewoon Kwak, Jisun. An Nov 2014

A First Look At Global News Coverage Of Disasters By Using The Gdelt Dataset, Haewoon Kwak, Jisun. An

Research Collection School Of Computing and Information Systems

In this work, we reveal the structure of global news coverage of disasters and its determinants by using a large-scale news coverage dataset collected by the GDELT (Global Data on Events, Location, and Tone) project that monitors news media in over 100 languages from the whole world. Significant variables in our hierarchical (mixed-effect) regression model, such as population, political stability, damage, and more, are well aligned with a series of previous research. However, we find strong regionalism in news geography, highlighting the necessity of comprehensive datasets for the study of global news coverage.


Cama: Efficient Modeling Of The Capture Effect For Low Power Wireless Networks, Behnam Dezfouli, Marjan Radi, Kamin Whitehouse, Shukor Abd Razak, Hwee-Pink Tan Nov 2014

Cama: Efficient Modeling Of The Capture Effect For Low Power Wireless Networks, Behnam Dezfouli, Marjan Radi, Kamin Whitehouse, Shukor Abd Razak, Hwee-Pink Tan

Research Collection School Of Computing and Information Systems

Network simulation is an essential tool for the design and evaluation of wireless network protocols, and realistic channel modeling is essential for meaningful analysis. Recently, several network protocols have demonstrated substantial network performance improvements by exploiting the capture effect, but existing models of the capture effect are still not adequate for protocol simulation and analysis. Physical-level models that calculate the signal-to-interference-plus-noise ratio (SINR) for every incoming bit are too slow to be used for large-scale or long-term networking experiments, and link-level models such as those currently used by the NS2 simulator do not accurately predict protocol performance. In this article, …


Stopwatch: A Cloud Architecture For Timing Channel Mitigation, Peng Li, Debin Gao, Michael K Reiter Nov 2014

Stopwatch: A Cloud Architecture For Timing Channel Mitigation, Peng Li, Debin Gao, Michael K Reiter

Research Collection School Of Computing and Information Systems

This article presents StopWatch, a system that defends against timing-based side-channel attacks that arise from coresidency of victims and attackers in infrastructure-as-a-service clouds. StopWatch triplicates each cloud-resident guest virtual machine (VM) and places replicas so that the three replicas of a guest VM are coresident with nonoverlapping sets of (replicas of) other VMs. StopWatch uses the timing of I/O events at a VM’s replicas collectively to determine the timings observed by each one or by an external observer, so that observable timing behaviors are similarly likely in the absence of any other individual, coresident VMs. We detail the design and …


On Joint Modeling Of Topical Communities And Personal Interest In Microblogs, Tuan-Anh Hoang, Ee Peng Lim Nov 2014

On Joint Modeling Of Topical Communities And Personal Interest In Microblogs, Tuan-Anh Hoang, Ee Peng Lim

Research Collection School Of Computing and Information Systems

In this paper, we propose the Topical Communities and Personal Interest (TCPI) model for simultaneously modeling topics, topical communities, and users’ topical interests in microblogging data. TCPI considers different topical communities while differentiating users’ personal topical interests from those of topical communities, and learning the dependence of each user on the affiliated communities to generate content. This makes TCPI different from existing models that either do not consider the existence of multiple topical communities, or do not differentiate between personal and community’s topical interests. Our experiments on two Twitter datasets show that TCPI can effectively mine the representative topics for …


Vector Abstraction And Concretization For Scalable Detection Of Refactorings, Narcisa Andreea Milea, Lingxiao Jiang, Siau-Cheng Khoo Nov 2014

Vector Abstraction And Concretization For Scalable Detection Of Refactorings, Narcisa Andreea Milea, Lingxiao Jiang, Siau-Cheng Khoo

Research Collection School Of Computing and Information Systems

Automated techniques have been proposed to either identify refactoring opportunities (i.e., code fragments that can be but have not yet been restructured in a program), or reconstruct historical refactorings (i.e., code restructuring operations that have happened between different versions of a program). In this paper, we propose a new technique that can detect both refactoring opportunities and historical refactorings in large code bases. The key of our technique is the design of vector abstraction and concretization operations that can encode code changes induced by certain refactorings as characteristic vectors. Thus, the problem of identifying refactorings can be reduced to the …


Grumon: Fast And Accurate Group Monitoring For Heterogeneous Urban Spaces, Rijurekha Sen, Youngki Lee, Kasthuri Jayarajah, Rajesh Krishna Balan, Archan Misra Nov 2014

Grumon: Fast And Accurate Group Monitoring For Heterogeneous Urban Spaces, Rijurekha Sen, Youngki Lee, Kasthuri Jayarajah, Rajesh Krishna Balan, Archan Misra

Research Collection School Of Computing and Information Systems

Real-time monitoring of groups and their rich contexts will be a key building block for futuristic, group-aware mobile services. In this paper, we propose GruMon, a fast and accurate group monitoring system for dense and complex urban spaces. GruMon meets the performance criteria of precise group detection at low latencies by overcoming two critical challenges of practical urban spaces, namely (a) the high density of crowds, and (b) the imprecise location information available indoors. Using a host of novel features extracted from commodity smartphone sensors, GruMon can detect over 80% of the groups, with 97% precision, using 10 minutes latency …


Managing Seller Heterogeneity In A Competitive Marketplace, R. Wu, Mei Lin Nov 2014

Managing Seller Heterogeneity In A Competitive Marketplace, R. Wu, Mei Lin

Research Collection School Of Computing and Information Systems

The growth of online marketplaces is accompanied by significant heterogeneity of the third-party sellers. The marketplace owner often applies policies that favor the sellers who offer higher values to buyers, which puts the lower-value sellers at an even greater disadvantage. This leads to the phenomenon of Matthew Effect. Our study focuses on a marketplace owner’s policy in managing seller heterogeneity and analyzes Matthew Effect in a competitive market environment. By extending the circular city model, we analytically examine the price competition among a large number of sellers that differ both in variety and in their value offerings. We present the …


Improving The Efficacy Of Web-Based Educational Outreach In Ecology, Gregory R. Goldsmith, Andrew D. Fulton, Colin D. Witherill, Javier F. Espeleta Oct 2014

Improving The Efficacy Of Web-Based Educational Outreach In Ecology, Gregory R. Goldsmith, Andrew D. Fulton, Colin D. Witherill, Javier F. Espeleta

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Scientists are increasingly engaging the web to provide formal and informal science education opportunities. Despite the prolific growth of web-based resources, systematic evaluation and assessment of their efficacy remains limited. We used clickstream analytics, a widely available method for tracking website visitors and their behavior, to evaluate 60,000 visits over three years to an educational website focused on ecology. Visits originating from search engine queries were a small proportion of the traffic, suggesting the need to actively promote websites to drive visitation. However, the number of visits referred to the website per social media post varied depending on the social …


Information Security Newsletter Oct 2014

Information Security Newsletter

Offices & Divisions: Division of Information Technology Services (Archived)

No abstract provided.


A Causal Model To Predict Organizational Knowledge Sharing Via Information And Communication Technologies, Simon Cleveland Oct 2014

A Causal Model To Predict Organizational Knowledge Sharing Via Information And Communication Technologies, Simon Cleveland

CCAC Theses and Dissertations

Knowledge management literature identifies numerous barriers that inhibit employees' knowledge seeking and knowledge contributing practices via information and communication technologies (ICTs). Presently, there is a significant gap in the literature that explains what factors promote common knowledge sharing barriers. To bridge this gap, this study examined two research questions: 1) What are the potential factors that contribute to the commonly accepted barriers to knowledge sharing?, and 2) How do these factors impact employees' use of ICTs for knowledge seeking and knowledge contributing? Literature review of 103 knowledge management articles identified three major barriers to knowledge sharing practices (lack of time, …


Seqassist: A Novel Toolkit For Preliminary Analysis Of Next-Generation Sequencing Data, Yan Peng, Andrew S. Maxwell, Natalie D. Barker, Jennifer G. Laird, Alan J. Kennedy, Nan Wang, Chaoyang Zhang, Ping Gong Oct 2014

Seqassist: A Novel Toolkit For Preliminary Analysis Of Next-Generation Sequencing Data, Yan Peng, Andrew S. Maxwell, Natalie D. Barker, Jennifer G. Laird, Alan J. Kennedy, Nan Wang, Chaoyang Zhang, Ping Gong

Faculty Publications

Background: While next-generation sequencing (NGS) technologies are rapidly advancing, an area that lags behind is the development of efficient and user-friendly tools for preliminary analysis of massive NGS data. As an effort to fill this gap to keep up with the fast pace of technological advancement and to accelerate data-to-results turnaround, we developed a novel software package named SeqAssist ("Sequencing Assistant" or SA).

Results: SeqAssist takes NGS-generated FASTQ files as the input, employs the BWA-MEM aligner for sequence alignment, and aims to provide a quick overview and basic statistics of NGS data. It consists of three separate workflows: …