Chemistry Commons^™

Peptide Arrays For Detecting Naphthenic Acids In Oil Sands Process Affected Water, Kamaljit Kaur, Subir Bhattacharjee, Rajesh G. Pillai, Sahar Ahmed, Sarfuddin Azmi

Pharmacy Faculty Articles and Research

Naphthenic acids (NAs) are water-soluble components of petroleum. The characterization and quantification of NAs by analytical methods have proved quite challenging, whilst the toxic effects of these water-soluble compounds on a variety of organisms adversely affecting reproduction and steroid production is becoming apparent. In this study, we report a fluorescence-based competitive binding method for rapid sensing of the presence of NAs using cellulosic peptide array strips as sensors. The peptide array was designed from sequences derived from the estrogen receptor (ER). Several of these peptides were able to detect the presence of NAs at low micromolar (∼5 mg L^{−1 …}

Phenyl Functionalized Sol-Gel Silica Sorbent For Capillary Microextraction And Chromia-Based Sol-Gel Ucon Stationary Phase For Capillary Gas Chromatography, Michael M. Mclean

USF Tampa Graduate Theses and Dissertations

The first chapter of this thesis presents an introduction to sol-gel methodology whose usefulness as a synthetic route will be demonstrated with two applications in chromatography. The first application involves the fabrication of a capillary micro-extraction (CME) device by coating a phenyl functionalized extracting phase on the inner surface of a fused silica capillary for analyte pre-concentration. The device was coupled on-line to a RP-HPLC system and practicality was demonstrated using allergens as target analytes. The allergens chosen as model analytes are typically found in fragrance products and food. Most of the 26 fragrance allergens that are monitored by various …

Using Interviews In Cer Projects: Options, Considerations, And Limitations, Deboarh G. Herrington, Patrick L. Daubenmire

Peer Reviewed Articles

Interviews can be a powerful chemistry education research tool. Different from an assessment score or Likert-scale survey number, interviews can provide the researcher with a way to examine and describe what we cannot see, aspects such as feelings, thoughts, or explanations of thinking or behavior. Most people have no doubt seen countless interviews on TV news and talk shows. These sessions might convey interviewing as a spontaneous, easy, and straightforward process. However, using interviews as a meaningful research tool requires considerable thought, preparation, and practice. This chapter provides a general introduction to the use of interviews as a tool within …

Discovery Of Thienoquinolone Derivatives As Selective And Atp Non-Competitive Cdk5/P25 Inhibitors By Structure-Based Virtual Screening, Arindam Chatterjee, Stephen J. Cutler, Robert J. Doerksen, Ikhlas A. Khan, John S. Williamson

Office for Research Publications and Presentations

Calpain mediated cleavage of CDK5 natural precursor p35 causes a stable complex formation of CDK5/p25, which leads to hyperphosphorylation of tau. Thus inhibition of this complex is a viable target for numerous acute and chronic neurodegenerative diseases involving tau protein, including Alzheimer’s disease. Since CDK5 has the highest sequence homology with its mitotic counterpart CDK2, our primary goal was to design selective CDK5/p25 inhibitors targeting neurodegeneration. A novel structure-based virtual screening protocol comprised of e-pharmacophore models and virtual screening workflow was used to identify nine compounds from a commercial database containing 2.84 million compounds. An ATP non-competitive and selective thieno[3,2- …

Comparison Of Crystal Structures Of 4-(Benzo[B]Thiophen-2-Yl)-5-(3,4,5-Trimethoxyphenyl)-2H-1,2,3-Triazole And 4-(Benzo[B]Thiophen-2-Yl)-2-Methyl-5-(3,4,5-Trimethoxyphenyl)-2H-1,2,3-Triazole, Narsimha Reddy Penthala, Nikhil Reddy Madadi, Shobanbabu Bommagani, Sean Parkin, Peter A. Crooks

Chemistry Faculty Publications

The title compound, C₁₉H₁₇N₃O₃S (I), was prepared by a [3 + 2]cyclo­addition azide condensation reaction using sodium azide and l-proline as a Lewis base catalyst. N-Methyl­ation of compound (I) using CH₃I gave compound (II), C₂₀H₁₉N₃O₃S. The benzo­thio­phene ring systems in (I) and (II) are almost planar, with r.m.s deviations from the mean plane = 0.0205 (14) in (I) and 0.016 (2) Å in (II). In (I) and (II), the triazole rings make dihedral angles of 32.68 (5) and 10.43 (8)°, respectively, …

Manufacturing Of Transparent Composites Using Vacuum Infusion Process, V. G.K. Menta, R. R. Vuppalapati, K. Chandrashekhara, Thomas P. Schuman

Chemistry Faculty Research & Creative Works

A novel optically transparent glass fiber reinforced polymer matrix composite has been developed by infusing a clear epoxy resin system of matching refractive index into a conventional E-glass fabric preform. Transparent composites are manufactured using a low cost, environmentally friendly vacuum infusion process. Physical and mechanical tests have been conducted. Transparent composites manufactured using the modified vacuum infusion process had a fiber volume fraction of 40%. Tensile strength and tensile modulus of these composites were 374.9 MPa and 31.74 GPa respectively. The results indicate that the transparent composites possess good physical and mechanical properties. These transparent composites form a good …

Photoelectrochemical Water-Splitting Ancillary Components, Robert A. Allen, Todd G. Deutsch

Annual Student Research Poster Session

No abstract provided.

Probe Location Within Interfacial Layer Of Ctab Reverse Micelle System, Jonathan Li, Bridget L. Gourley

Annual Student Research Poster Session

To understand the chemistry of the interfacial region of reverse micelles (RM), we studied RM system made with the cationic surfactant cetyltrimethylammonium bromide (CTAB), alkanol cosurfactants dissolved in cyclohexane with water core. Spectroscopic methods, specifically UV-Vis absorption of Coumarin 343 (C343) as a probe molecule, were used to determine basic properties of RM systems. However, the probe location was difficult to determine because the spectrum (absorbance), when dissolved in RM solution, didn’t match the spectra in any of the pure components. Our data suggests that the interfacial layer of RM cannot be thought of behaving only the characteristic of single …

Dynamical Behavior Of Probe Molecules And Dominant Role Of Cosurfactants In Reverse Micelles, Jia Qi, Bridget L. Gourley

Annual Student Research Poster Session

Reverse micelles (RM) are nanopools of water surrounded by surfactant molecules in a non-polar solvent. Our studies investigated properties of RM probe molecules in the interfacial boundary between water and non-polar solvents. Reichardt’s dye, a probe molecule, was used to uncover properties of RM. UV/vis spectroscopy of Reichardt’s dye reveals information about polarity and the dye’s approximate residential location and also helps confirm molecular orbital energy diagram. We discovered an interesting phenomenon with Reichardt’s dye in RM. Surprisingly, the UV/vis spectrum of Reicahrdt’s dye in CTAB RM with octanol as a cosurfactant exhibits decreasing absorbance and a blue shift. Reichardt’s …

Learning About Being A Scientist From The Vitamin B-12 Structure Collaboration, Susan White

Chemistry Faculty Research and Scholarship

This historical note reviews the work that resulted in the publication of the structure of Vitamin B12. The collaborations and resulting friendships that developed during this time made a strong impression on the author and encouraged her to pursue a scientific career.

Rnase L Interacts With Filamin A To Regulate Actin Dynamics And Barrier Function For Viral Entry, Krishnamurthy Malathi, Mohammad Adnan Siddiqui, Shubham Dayal, Merna Naji, Heather J, Ezelle, Chun Zeng, Aimin Zhou, Bret A. Hassel

Chemistry Faculty Publications

The actin cytoskeleton and its network of associated proteins constitute a physical barrier that viruses must circumvent to gain entry into cells for productive infection. The mechanisms by which the physical signals of infection are sensed by the host to activate an innate immune response are not well understood. The antiviral endoribonuclease RNase L is ubiquitously expressed in a latent form and activated upon binding 2-5A, a unique oligoadenylate produced during viral infections. We provide evidence that RNase L in its inactive form interacts with the actin-binding protein Filamin A to modulate the actin cytoskeleton and inhibit virus entry. Cells …

Searching For Chemical Signatures Of Multiple Stellar Populations In The Old, Massive Open Cluster Ngc 6791, Angela Bragaglia, Christopher Sneden, Eugenio Carretta, Raffaele G. Gratton, Sara Lucatello, Peter F. Bernath, James S. A. Brooke, Ram S. Ram

Chemistry & Biochemistry Faculty Publications

Galactic open and globular clusters (OCs, GCs) appear to inhabit separate regions of the age-mass plane. However, the transition between them is not easily defined because there is some overlap between high-mass, old OCs and low-mass, young GCs. We are exploring the possibility of a clear-cut separation between OCs and GCs using an abundance feature that has been found so far only in GCs: (anti)correlations between light elements. Among the coupled abundance trends, the Na-O anticorrelation is the most widely studied. These anticorrelations are the signature of self-enrichment, i.e., of a formation mechanism that implies multiple generations of stars. Here …

Hydrolytically Stable Analogues Of Sugar Phosphates And A Miniaturized In Situ Enzymatic Screen, Xiang Fei

Department of Chemistry: Dissertations, Theses, and Student Research

The glmS riboswitch undergoes self-cleavage upon binding its metabolic product GlcN6P, thereby providing a negative feedback mechanism limiting translation of the glmS protein when GlcN6P is abundant. As a first step toward the development of novel antimicrobials, we have synthesized a series of GlcN6P analogues bearing phosphatase-inert surrogates in place of the natural phosphate ester functionality. The self-cleavage assay identified two such compounds that display significant riboswitch actuator activity; namely those bearing a 6-phosphonomethyl group or a 6-O-malonyl ether. These two analogues exhibit a 22-fold and a 27-fold higher catalytic efficiency, respectively, than does glucosamine. Docking experiments were …

Reducing The Effects Of Shot Noise Using Nanoparticles, Moshood K. Morakinyo, Shankar B. Rananavare

Chemistry Faculty Publications and Presentations

We present a hybrid nano-lithographic approach to minimizes the effects of line edge roughness and shot noise in nano-hole patterning by reflowing photoresist polymers around the nanoparticles deposited using self-assembly and simple etch chemistries. The method extends the transistor contact holes patterning limits to below 20 nm.

Small Carbon Chains In Circumstellar Envelopes, R. J. Hargreaves, K. Hinkle, P. F. Bernath

Chemistry & Biochemistry Faculty Publications

Observations of carbon-rich circumstellar envelopes were made using the Phoenix spectrograph on the Gemini South telescope to determine the abundance of small carbon chain molecules. Vibration-rotation lines of the ν3 antisymmetric stretch of C₃ near 2040 cm^-1 (4.902 μm) have been used to determine the column density for four carbon-rich circumstellar envelopes: CRL 865, CRL 1922, CRL 2023 and IRC +10216. We additionally calculate the column density of C₅ for IRC +10216, and provide an upper limit for five more objects. An upper limit estimate for the C₇ column density is also provided for IRC+10216. A …

Study Of As(Iii) And As(V) Oxoanion Adsorption Onto Single And Mixed Ferrite And Hausmannite Nanomaterials, Sandra Garcia, Saima Sardar, Stephanie Maldonado, Velia Garcia, C Tamez, Jason Parsons

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

The removal of arsenic(III) and arsenic(V) from an aqueous solution through adsorption on to Fe3O4, MnFe2O4, 50% Mn substituted Fe3O4, 75% Mn substituted Fe3O4, and Mn3O4 nanomaterials was investigated. Characterization of the nanomaterials using XRD showed only pure phases for Mn3O4, MnFe2O4, and Fe3O4. The 50% and 75% substituted nanomaterials were found to be mixtures of Mn3O4 and Fe3O4. From batch studies the optimum binding pH of arsenic(III) and arsenic(V) to the nanomaterials was determined to be pH 3. The binding capacity for As(III) and As(VI) to the various nanomaterials was determined using Isotherm studies. The binding capacity of Fe3O4 …

Cross-Disciplinary Sciences At Gettysburg College: Second Annual Poster Presentation, X-Sig

Student Publications

This booklet includes Biology student presentations by: Taylor Bury, Abigail Dworkin-Brodsky, Mary Pearce, Jasper Leavitt, Morgan Panzer, Ellen Petley, Kalli Qutub, Taylor Randell, Samantha Eck, Lana McDowell, Jenn Soroka, Celina Harris, Natalie Tanke, Alexandra Turano, and Caroline Garliss.

This booklet includes Biochemistry & Molecular Biology student presentations by: Matthew Dunworth, Andrew Sydenstricker, Brianne Tomko, Albert Vill, Warren Campbell, David Van Doren, Kevin Mrugalski, Stacey Heaver, Alecia Achimovich, and Katherine Boas.

This booklet includes Chemistry student presentations by: Kristen Baker, Laura Lee, Kathryn Fodale, Daniel Ruff, Michael Counihan, Ida DiMucci, Joshua Sgroi, Celina Harris, and Natalie Tanke.

This booklet include Health …

A Generator-Produced Gallium-68 Radiopharmaceutical For Pet Imaging Of Myocardial Perfusion, Nigam Rath, Vijay Sharma, Jothilingam Sivapackiam, Scott Harpstrite, Julie Prior, Hannah Gu, David Piwnica-Worms

Chemistry & Biochemistry Faculty Works

Lipophilic cationic technetium-99m-complexes are widely used for myocardial perfusion imaging (MPI). However, inherent uncertainties in the supply chain of molybdenum-99, the parent isotope required for manufacturing 99Mo/99mTc generators, intensifies the need for discovery of novel MPI agents incorporating alternative radionuclides. Recently, germanium/gallium (Ge/Ga) generators capable of producing high quality 68Ga, an isotope with excellent emission characteristics for clinical PET imaging, have emerged. Herein, we report a novel 68Ga-complex identified through mechanism-based cell screening that holds promise as a generator-produced radiopharmaceutical for PET MPI.

Correlation Of Chemical Concentration To Color, Garrett Bosse, Nathan Schrock, Ryan Longchamps, Sam Winkler

Von Braun Symposium Student Posters

No abstract provided.

Electrochemical And Spectroscopic Studies Of Ethanol Oxidation On Nano-Cubic Pt Modified By Tin Adatoms, Lu Rao, Bin-Wei Zhang, Yan-Yan Li, Yan-Xia Jiang, Shi-Gang Sun

Journal of Electrochemistry

The nano-cubic Pt modified by tin (Sn) was synthesized and used to investigate the role of this adatom played in the ethanol oxidation. The onset potential of ethanol oxidation was significantly shifted negatively which can be forward about 300 mV when the coverage of Sn (θSn)was 0.9. The electrtochemical in situ FTIR result demonstrated that the amount of CO₂ increased first, and then decreased with θSn increased, and reached the maximun when θSn was 0.38. Furthermore, the formation of acetic acid could be observed at very low potential (-0.05 V) after modifying Sn adatom, and the amount of acetic …

Preparation Of Pt/Dna-Mwcnts/Gc Electrode And Its Electrocatalytic Activity Toward H2O2 Reduction, Li-Li Fan, Li-Na Wu, Zhi-Yu Qu, Dan-Feng Liu, Jun-Ming Zhang, Si-Ming Fan, You-Jun Fan

Journal of Electrochemistry

The DNA-multi-walled carbon nanotubes (MWCNTs)/glassy carbon (GC) electrode was prepared by modifying the DNA functionalized MWCNTs composite on a GC electrode. A novel non-enzymatic H₂O₂ sensing electrode was fabricated by electrodepositing Pt nanoparticles on the DNA-MWCNTs/GC electrode. The modified electrodes were characterized by scanning electron microscope (SEM). The response properties of the sensing electrode to H₂O₂ were investigated by cyclic voltammetry and chronoamperometry. The results indicated that the sensing electrode exhibited a good linear relationship between response current and H₂O₂ concentration in the range of 0.04 ~ 18.07 mmol·L^-1 with …

Boosting Electrocatalytic Activity Of Nitrogen-Doped Graphene/Carbon Nanotube Composite For Oxygen Reduction Reaction, Yu Zhang, Jin-Song Hu, Wen-Jie Jiang, Lin Guo, Zi-Dong Wei, Li-Jun Wan

Journal of Electrochemistry

Developing low-cost catalysts with high electrocatalytic activity for oxygen reduction reaction (ORR) has recently attracted much attention because the sluggish ORR currently limits the performance and commercialization of fuel cells and metal-air batteries as well. Nitrogen doped carbon materials have been considered as a promising candidate for the replacement of high-cost and scarce Pt-based catalysts although their electrocatalytic activity still needs to be much improved. In this work, an improved nitrogen-doped graphene/carbon nanotubes composite (N-rGO/CNT) was developed as an efficient ORR electrocatalyst. It was found that the ORR activity of N-rGO/CNT composite could be significantly enhanced by introducing iron in …

Electrochemical Deposition Of Copt Alloy Thin Film And Its Abnormal Infrared Effects, Qing-Song Chen, Guo-Cong Guo, Shi-Gang Sun

Journal of Electrochemistry

Nanostructured CoPt alloy thin film was deposited on glassy carbon substrate (denoted as CoPt/GC) under cyclic voltammetric conditions. SEM studies demonstrated that the CoPt/GC was composed of nonuniform nanoparticles with an average size of 139 nm. The composition of the CoPt/GC was analyzed by energy dispersive X-ray spectroscopy (EDS), which depicts a Co:Pt ratio of ca. 3:5. In situ FTIR spectroscopy employing CO adsorption as a probe reaction revealed that the CoPt/GC exhibits abnormal infrared effects (AIREs). The unique anomalous IR features of CO adsorbed (CO_ad) on CoPt/GC consist in the complete inversion of the CO_ad IR …

Recent Progress In Heteroatoms Doped Carbon Materials As A Catalyst For Oxygen Reduction Reaction, Wei Ding, Xue Zhang, Li Li, Zi-Dong Wei

Journal of Electrochemistry

Developing catalytic materials for oxygen reduction reactions (ORR) with high performance and low cost has been one of the major challenges for large-scale applications of fuel cells. In this review, we summarize the recent progress in the heteroatoms doped carbon materials as a catalyst for the catalysis of ORR, with an emphasis on the universal origin of their catalytic mechanisms. The future prospects of the metal-free catalyst were to find precisely controlled doping methods, to explore the role of heteroatoms in the catalysis, and to generate more active catalysts with suitable nanostructure.

Fabrication Of Pattern Of Graphene Oxide And Au Nanoparticles By Microcontanct Printing Technique, Wen-Hui Pang, Xiao-Jian Xiao, Meng-Wei Ye, Kai-Chao Deng, Jing Tang

Journal of Electrochemistry

Graphene oxide (GO) was prepared by modified Hummers method. Using the GO solution as "ink", Au nanoparticles (AuNPs) and GO were transferred to the surface of ITO substrate modified with (3-aminopropyl) triethoxysilane (APTES/ITO) in a sequence. The transferred AuNPs and GO could form a uniform and dense composite pattern which was characterized by FE-SEM and AFM. Moreover, using the APTES/ITO substrate surface potential as zero, the sequences of the surface potential were APTES>GO>Au.

Fabrication And Characterization Of The Ni-Scsz Composite Anodes With A Cu-Lscm-Ceo2 Catalyst Layer In The Thin Film Sofc, Yao Lv, Bo Huang, Xi-Zhi Gu, Chun-Yi Hou, Yi-Xing Hu, Xiao-Yin Wang, Xin-Jian Zhu

Journal of Electrochemistry

Solid oxide fuel cell (SOFC) directly operating on hydrocarbon without external reforming has the potential of greatly speeding up the application of SOFCs for transportation. In this paper, a three-layer structure anode was fabricated by tape casting and screen printing method. The addition of Cu-LSCM-CeO₂ to the supported anode surface presented better performance running on H₂ and ethanol. The maximum power densities were 511 and 390 mW?cm^-2, respectively, running on H₂ and ethanol at 750 °C. No significant degradation was observed on the anode. Consequently, the Cu-LSCM-CeO₂ catalyst layer on the surface of the …

Influence Of Pt:Ru Ratio In Nanotubes Array Structures On The Electrocatalytic Activity Of Methanol Oxidation, Jin-Hua Yuan, Feng-Bin Wang, Xing-Hua Xia

Journal of Electrochemistry

Bimetallic PtRu nanotubes array electrodes (NTAEs) with varied Pt to Ru atomic ratios have been prepared by electrochemical codeposition in 3-aminopropyltri-methoxysilane modified porous anodic alumina (PAA) membranes. The structure and morphology of the catalysts were characterized using X-ray diffraction (XRD) and scanning electron microscopy (SEM), respectively. Electrochemical results showed that the NTAEs with varied atomic ratios could be achieved by controlling the precursor concentration for deposition. The prepared nanoarrays composed of Pt or PtRu alloy promoted the mass-normalized activity toward the sluggish electrooxidation reaction of methanol due to the increased catalytic activity and real surface area, as well as the …

Electrochemistry Of Glucose Oxidase Modified On Porin-Phospholipid Biomimic Membrane, Kun-Qi Wang, Zuo-Ming Zhang, Wei Xing, Chang-Peng Liu, Xing Zhou

Journal of Electrochemistry

Biomimic membrane with nano-channels, which is made up of porin MspA and 1,2-Dimyristoyl-sn-glycero-3-phosphocholine (DMPC) is constructed on glassy carbon substrate, and glucose oxidase (GOD) is modified on it. The direct electrochemical reaction and electrocatalytic behavior to oxygen and glucose of GOD on the GOD/MspA-DMPC/GC electreode are expounded by the cyclic voltammetric method. The study shows that GOD immobilized on porin MspA and DMPC biomimic membrane displays direct and surface-controlled electrochemical reaction nearby formal potential (E0′) of the flavoprotein active centre (FAD/FADH), and the electrochemical reaction contains two electrons and two protons exchange in 0.1 mmol·L^-1 phosphate buffer solution (PBS) …

Effect Of Imidazole Ionic Liquids On The Electro-Oxidation Of P-Methoxy Toluene, Qiong Chen, Ying-Hong Zhu, Ying Zhu, Yan-Fang Li, Chun-An Ma

Journal of Electrochemistry

The interactions between four Imidazole ionic liquids (EMIMBF₄, BMIMBF₄, BMIMHSO₄, BMIMAc) and p-methoxy toluene were investigated by ultraviolet spectroscopy. The red shifts of absorption peak were obviously observed, and the fine structures of the spectroscopy were disappeared on the long wave district. p-MT producing stable excited state was benefit from the interaction with solvent molecules. The electro-oxidation behavious of p-MT were studied in the four ILs on platinum electrode by cyclic voltammetry (CV) and chronoamperometry (CP), and the diffusion coefficients (D) and activation energies (ED) were calculated. The results indicated that the electro-oxidation process …

Review Of Carbon Materials Energy Storage Mechanism In Lead-Carbon Battery, Le-Ying Wang, Hao Zhang, Chen Hu, Shu-Kai Zhang, Hai-Lei Zhao, Gao-Ping Cao, Wen-Feng Zhang, Yu-Sheng Yang, Xiao-Kang Lai

Journal of Electrochemistry

The traditional lead-acid batteries are mainly used for automobile and various internal combustion engine starting, wireless communication base stations and renewable energy storage; however, their negative plates are easily sulfated under partial-state-of-charge duty, then their charging capacity and cycle life are greatly reduced. Lead-carbon battery is a new type of lead-acid battery, in which a carbon material with high specific surface area and conductivity is added into a negative plate, and has excellent rate discharge performance and higher PSoC cycle life. Lead-carbon battery has a good application prospect in energy storage and hybrid electric vehicle, so these years the study …