Other Applied Mathematics Commons^™

A Categorical Framework For Modeling Genetic Drift, Taylor G. Mendes

Rose-Hulman Undergraduate Mathematics Journal

Genetic drift describes changes in allele frequencies that arise from chance sampling in finite populations. This paper develops a categorical framework for organizing the structural features of drift. Population states are modeled as objects, evolutionary transitions as morphisms, reversible transitions as groupoid morphisms, and structure-preserving comparisons between models as functors. Group actions are used to describe deterministic evolutionary operators such as mutation and selection, while orbits and fixed points identify reachable allele-frequency states and stable absorbing outcomes. Universal properties are then used to describe drift as a coherence condition connecting stochastic transitions with deterministic evolutionary maps. The resulting framework complements …

Cdt-1d Cnn Integration With Simpson-Sobolev Regularization For High-Frequency Options Trading: With Fem-Based Heston Option Pricing, Daniel M. Margolis, Johannes Tausch, Arthur K. Selender

Mathematics Theses and Dissertations

This dissertation presents a computational framework for high-frequency options trading that combines Cross-Data-Type 1-D Convolutional Neural Networks (CDT-1D CNN) with Simpson-Sobolev regularization for directional prediction, and finite element methods (FEM) for realistic option pricing during backtesting. The core innovation lies in developing a mathematically rigorous regularization approach that maintains the adaptability of modern deep learning while enabling accurate evaluation through stochastic volatility models. The primary contribution is the Simpson-Sobolev regularization scheme, which extends traditional Sobolev regularization by incorporating Simpson’s rule for numerical integration. This approach achieves higher-order accuracy in approximating the Sobolev norms that control function smoothness. Simpson’s rule attains …

Bias, Structure, And Inference In Applied Network Analysis, Anna Vasenina

Dartmouth College Ph.D Dissertations

This dissertation develops mathematical and statistical methods for extracting reliable information from network data across biological applications, with an emphasis on understanding what observed network structure can and cannot resolve. The first study leverages protein–protein interaction network topology in the c-di-GMP signaling system of Pseudomonas fluorescens, showing that node centrality measures accurately classify protein domain types and that physical interaction structure contributes statistically significant predictive power for biofilm formation phenotypes across nearly 200 environments, while gene expression does not. The second study examines sampling bias in lemur-plant trophic interaction networks in Madagascar, demonstrating that differential detection of diurnal versus …

Momentum Space Algorithm For Electronic Structure Of Double-Incommensurate Trilayer Graphene, Kenneth Silver Beard

LSU Doctoral Dissertations

Numerical algorithms for computing the electronic structure of incommensurate 2D-materials using ab initio models are critical for predicting material properties and guiding experiments. For bilayers, momentum space and continuum models have been introduced to approximate observables of ab initio tight-binding models using a momentum description, despite the lack of periodicity in the tight-binding model required for Bloch theory. A similar structure has been introduced for double-incommensurate trilayers using a continuum model, where the three lattices are mutually incommensurate. However, this description leads to a four-dimensional lattice space, and numerical convergence of the density of states has been observed to be …

A New Approach To Generate Combinatorial Patterns In Logical Analysis Of Data And Its Application To Predict College Retention, Salihah Ahmed E. Jaafari

Theses and Dissertations

Student retention and degree completion remain central challenges for higher-education institutions, with significant implications for student success, institutional effectiveness, and public accountability. While advances in predictive analytics have enabled earlier identification of students at risk of withdrawal, many commonly used machine learning approaches suffer from limited interpretability, constraining their practical usefulness for advising, intervention, and policy decision making. This dissertation addresses the problem of predicting student persistence by developing and evaluating optimization based, interpretable classification models within the Logical Analysis of Data (LAD) framework. Building on existing LAD formulations, this research introduces two novel pattern generation models, the Best Term …

Decision Making For Large-Scale Problems Under Uncertainty And Conflict, Benjamin J. Hamlin

All Dissertations

Large-scale decision-making problems appear in many areas including long-range forecasting such as energy generation forecasting. Many such problems are subject to conflicting objectives and uncertain data, and can be modeled as linear optimization problems. We study novel theoretical results and algorithms for large-scale linear decision problems under conflict and uncertainty. First, we propose a parametric Benders decomposition algorithm for solving large-scale linear optimization problems with multiple objectives or deterministically uncertain objectives. Second, we extend the parametric Benders decomposition to a multi-stage setting, developing a parametric stochastic dual dynamic programming algorithm, which enables decision-making when conflicts and uncertainty have planning impacts …

Using Provided Guided Notes In Coordinated Introductory First-Year Mathematics Courses, Jennifer L. Huber

Mathematics Dissertations

The goal of this study is to investigate how standardized guided notes shape instructional practices and student engagement in coordinated introductory first-year college mathematics courses at a large public university. The researcher explored three multi-section introductory mathematics courses with overlapping learning objectives. Each course required students to purchase a student workbook as part of the instructional materials for the class. The instructors taught primarily from the workbook containing guided notes created by a former coordinator of the course. The researcher used a mixed-methods approach. Instructors and students participated in surveys, class observations and provided class meeting notes. Instructors shared additional …

Arrangements Of N Planes Resulting In One Bounded Tetrahedral Chamber, Ava Knight

Williams Honors College, Honors Research Projects

This paper investigates the combinatorial geometry of plane arrangements in three-dimensional space, focusing on configurations that produce exactly one bounded tetrahedral chamber. We define T(n) as the number of face-combinatorial equivalence classes of arrangements of n planes in ℝ³ containing exactly one bounded tetrahedral chamber. Known values — T(3) = 0, T(4) = 1, and T(5) = 2 — are established through direct construction, while T(6) remains an open problem. This paper contributes experimental evidence toward resolving T(6) by systematically extending the two valid 5-plane arrangements and verifying, through a plane removal argument, that each yields a valid plane configuration …

The Ellipsoidal Principal Semi-Axis Geometry Of The Solution To An Ivp For A Matrix Diffusion Pde, Brandon M. Fox

Electronic Theses & Dissertations (2024 - present)

We analyze the underlying geometry of the solution to an IVP for a matrix diffusion PDE. We first derive the fundamental solution to the PDE. We then determine the unique solution to the IVP. From there, we begin analyzing its underlying geometry. We first observe that the geometry exhibits an ellipsoidal nature. Furthermore, we observe that it is described by the principal semi-axis geometry of the ellipsoids associated with the solution. This conclusion follows from applying the Principal Axis Theorem to the associated ellipsoids to establish their principal semi-axis geometry, as governed by the eigenstructure of the matrix. This thesis …

Math Meets Climate: The Energy Balance Model, Maria I. Sanchez Muniz

Open Educational Resources

This assignment introduces students to the mathematics of Earth’s climate through the classical energy balance model. Students analyze how incoming solar radiation, outgoing thermal radiation, and temperature-dependent albedo interact to determine Earth’s equilibrium temperature. Using analytical calculations and computational tools, students identify equilibrium states, assess their stability, and interpret the results through the lens of dynamical systems and bifurcation theory. The activity builds conceptual understanding of climate feedbacks, greenhouse effects, and tipping behavior using a transparent, one-variable model. Designed for applied mathematics and interdisciplinary STEM courses, this assignment emphasizes computation, physical interpretation, and real-world relevance. It is released as a …

Understanding Enso Through Mathematical Models, Maria I. Sanchez Muniz

Open Educational Resources

This assignment introduces students to conceptual models of the El Niño–Southern Oscillation (ENSO) and guides them through a structured investigation of their physical and mathematical foundations. Students analyze the recharge–oscillator and delayed–oscillator frameworks, explore how differential equations capture ocean–atmosphere interactions, and evaluate parameter-driven changes in oscillatory behavior. A key component of the work is the guided use of generative AI as a research tool: students employ AI models to locate peer-reviewed literature, interrogate model extensions, and refine their understanding of complex mechanisms, while synthesizing all final explanations in their own words. By blending classical climate modeling with modern AI-supported inquiry, …

Quasistatic Peridynamics, Existence Of Unique Solution In The Presence Of Damage, Nuwanthi N. Samarawickrama

LSU Doctoral Dissertations

A mathematical model for damage propagation based on nonlocal potentials is developed within the framework of peridynamics. This model is applied to simulate damage evolution in cyclically loaded structures. By neglecting inertial effects, a well-posed quasistatic formulation for cyclic loading is obtained.\\ The resulting equation is expressed as a nonlocal and nonlinear integral operator that couples damage evolution to the deformation field.\\ This coupling occurs through the product of a damage factor and the derivative of a force potential. The damage factor ranges between zero and one, where one represents undamaged material and zero indicates complete damage.\\ It serves to …

Applications Of The Mathieu Groups And Information Theory In Dna Encoding Functions, Juan C. Nava Jr

Theses and Dissertations

A foundational idea in mathematics lies in breaking down existing components into their bare fundamentals. As evidenced by prime numbers and composites, we learn this idea at an early age. Categorizing these broken-down components into their simplest form allows mathematicians to construct proofs from emergent patterns. John Conway’s Atlas of Finite Groups in the 1990s was particularly concerned with the categorization of structures known as groups. There are certain axioms a group must adhere to, which amount to the retention of symmetry; ultimately a group helps us to better understand symmetric actions performed on a set with a binary operation. …

Learning With Errors Parameter Analysis, Archana Parameswaran

Cybersecurity Undergraduate Research Showcase

We implement a systematic approach for generating, evaluating, and benchmarking Learning with Errors implementations in Sage Math by varying lattice dimensions, moduli, error standard deviations, and multiple error distributions to observe concrete security-efficiency tradeoffs. The security estimator maps parameter sets to concrete security levels and bits, while performance metrics measured computational efficiency and memory requirements. Results indicate that various distribution types do not significantly impact security, though binomial distributions require more computational overhead than discrete gaussian or uniform. Memory requirements increased when modulus q increased from 12289 to 65537. Larger dimensions have an exponentially growing requirement for memory, but this …

Novel Generative And Language Model Architectures With Applications, Edison Mucllari

Theses and Dissertations--Mathematics

This dissertation investigates novel architectures to address fundamental challenges in machine learning, particularly focusing on transformer models, recurrent neural networks, GAN and continual learning and their applications in natural language processing and computer vision. We propose the Neumann-Cayley Gated Recurrent Unit (NC-GRU), which leverages a Neumann series-based Scaled Cayley transformation to maintain orthogonal weight matrices, effectively mitigating exploding gradients problems while improving long-term memory retention across prediction tasks. We demonstrate the practical applications of NC-GRU by implementing our proposed architecture into an autoencoder to derive neural molecular fingerprints. Building upon these advancements, we turn our attention to the transformer architecture, …

Bounding The Convex Hull Relaxation Of The Unit Commitment Problem With The Shapley-Folkman Theorem, Lauren Henderson

All Theses

The Unit Commitment (UC) problem finds an optimal schedule for a set of generators by minimizing the total operation cost subject to demand and operational constraints. The UC problem is often modeled with a mixed-integer linear program (MILP). We employ the Shapley-Folkman Theorem to provide a bound on the size of fractional solutions of its convex hull relaxation. This result is used to obtain a bound on the optimality gap between the MILP and the convex hull relaxation, which is further tightened using several problem-specific properties of UC. We conduct extensive numerical experiments to study the tightness of this threshold, …

Asymptotic Formula For Scattering Problems Related To Thin Metasurfaces, Zachary Jermain

LSU Doctoral Dissertations

The goal of this work is to develop an asymptotic formula for the behavior of a scattered electromagnetic field in the presence of a thin metamaterial known as a metasurface. By using a carefully chosen Green’s function and the single and double layer potentials we analyze the perturbed scattering problem in the presence of the metamaterial and a background scattering problem. By using Lippman-Schwinger type representation formulas for the two fields we develop the asymptotic formula for the perturbed field. From here we prove the asymptotic formula holds up to a specific error term based on the size of the …

Rsa Algorithm, Evalisbeth Garcia Diazbarriga

ATU Scholars Symposium

I will be presenting about the RSA method in cryptology which is the coding and decoding of messages. My research will focus on proving that the method works and how it is used to communicate secretly.

A Cohomological Perspective To Nonlocal Operators, Nicholas White

Honors Program: Senior Projects (Public)

Nonlocal models have experienced a large period of growth in recent years. In particular, nonlocal models centered around a finite horizon have been the subject of many novel results. In this work we consider three nonlocal operators defined via a finite horizon: a weighted averaging operator in one dimension, an averaging differential operator, and the truncated Riesz fractional gradient. We primarily explore the kernel of each of these operators when we restrict to open sets. We discuss how the topological structure of the domain can give insight into the behavior of these operators, and more specifically the structure of their …

Model Selection Through Cross-Validation For Supervised Learning Tasks With Manifold Data, Derek Brown

The Journal of Purdue Undergraduate Research

No abstract provided.

Problems In Chemical Graph Theory Related To The Merrifield-Simmons And Hosoya Topological Indices, William B. O'Reilly

College of Graduate Studies: Theses & Dissertations

In some sense, chemical graph theory applies graph theory to various physical sciences. This interdisciplinary field has significant applications to structure property relationships, as well as mathematical modeling. In particular, we focus on two important indices widely used in chemical graph theory, the Merrifield-Simmons index and Hosoya index. The Merrifield-Simmons index and the Hosoya index are two well-known topological indices used in mathematical chemistry for characterizing specific properties of chemical compounds. Substantial research has been done on the two indices in terms of enumerative problems and extremal questions. In this thesis, we survey known extremal results and consider the generalized …

The Computational Search For Unidentified Central Configurations Of The Newtonian N-Body Problem, Hannah G. Havel

CURE Proceedings

The N-body problem is a field of study in mathematics and physics that involves predicting the motion of particles moving under their mutual gravitational attraction. It is vital in celestial mechanics, such as planning collision-free satellite orbit trajectories. When beginning to understand the N-body problem, we can start by looking at equal masses of these particles or celestial bodies. As particles move, their position and velocity change, both energy and angular momentum are conserved. Sets of constant energy and angular momentum, known as integral manifolds, are higher-dimensional figures that represent constraints of movement to a system. Integral manifolds are described …

Reducing Food Scarcity: The Benefits Of Urban Farming, S.A. Claudell, Emilio Mejia

Journal of Nonprofit Innovation

Urban farming can enhance the lives of communities and help reduce food scarcity. This paper presents a conceptual prototype of an efficient urban farming community that can be scaled for a single apartment building or an entire community across all global geoeconomics regions, including densely populated cities and rural, developing towns and communities. When deployed in coordination with smart crop choices, local farm support, and efficient transportation then the result isn’t just sustainability, but also increasing fresh produce accessibility, optimizing nutritional value, eliminating the use of ‘forever chemicals’, reducing transportation costs, and fostering global environmental benefits.

Imagine Doris, who is …

Aspects Of Stochastic Geometric Mechanics In Molecular Biophysics, David Frost

All Dissertations

In confocal single-molecule FRET experiments, the joint distribution of FRET efficiency and donor lifetime distribution can reveal underlying molecular conformational dynamics via deviation from their theoretical Forster relationship. This shift is referred to as a dynamic shift. In this study, we investigate the influence of the free energy landscape in protein conformational dynamics on the dynamic shift by simulation of the associated continuum reaction coordinate Langevin dynamics, yielding a deeper understanding of the dynamic and structural information in the joint FRET efficiency and donor lifetime distribution. We develop novel Langevin models for the dye linker dynamics, including rotational dynamics, based …

Rigid Body Constrained Motion Optimization And Control On Lie Groups And Their Tangent Bundles, Brennan S. Mccann

Doctoral Dissertations and Master's Theses

Rigid body motion requires formulations where rotational and translational motion are accounted for appropriately. Two Lie groups, the special orthogonal group SO(3) and the space of quaternions H, are commonly used to represent attitude. When considering rigid body pose, that is spacecraft position and attitude, the special Euclidean group SE(3) and the space of dual quaternions DH are frequently utilized. All these groups are Lie groups and Riemannian manifolds, and these identifications have profound implications for dynamics and controls. The trajectory optimization and optimal control problem on Riemannian manifolds presents significant opportunities for theoretical development. Riemannian optimization is an attractive …

Efficient And Secure Digital Signature Algorithm (Dsa), Nissa Mehibel, M'Hamed Hamadouche

Emirates Journal for Engineering Research

The digital signature is used to ensure the integrity of messages as well as the authentication and non-repudiation of users. Today it has a very important role in information security. Digital signature is used in various fields such as e-commerce and e-voting, health, internet of things (IOT). Many digital signature schemes have been proposed, depending on the computational cost and security level. In this paper, we analyzed a recently proposed digital signature scheme based on the discrete logarithm problem (DLP). Our analysis shows that the scheme is not secure against the repeated random number attack to determine the secret keys …

Asymptotic Cones Of Quadratically Defined Sets And Their Applications To Qcqps, Alexander Joyce

All Dissertations

Quadratically constrained quadratic programs (QCQPs) are a set of optimization problems defined by a quadratic objective function and quadratic constraints. QCQPs cover a diverse set of problems, but the nonconvexity and unboundedness of quadratic constraints lead to difficulties in globally solving a QCQP. This thesis covers properties of unbounded quadratic constraints via a description of the asymptotic cone of a set defined by a single quadratic constraint. A description of the asymptotic cone is provided, including properties such as retractiveness and horizon directions.

Using the characterization of the asymptotic cone, we generalize existing results for bounded quadratically defined regions with …

Dna Self-Assembly Of Trapezohedral Graphs, Hytham Abdelkarim

Electronic Theses, Projects, and Dissertations

Self-assembly is the process of a collection of components combining to form an organized structure without external direction. DNA self-assembly uses multi-armed DNA molecules as the component building blocks. It is desirable to minimize the material used and to minimize genetic waste in the assembly process. We will be using graph theory as a tool to find optimal solutions to problems in DNA self-assembly. The goal of this research is to develop a method or algorithm that will produce optimal tile sets which will self-assemble into a target DNA complex. We will minimize the number of tile and bond-edge types …

Stability Of Cauchy's Equation On Δ+., Holden Wells

Electronic Theses and Dissertations

The most famous functional equation f(x+y)=f(x)+f(y) known as Cauchy's equation due to its appearance in the seminal analysis text Cours d'Analyse (Cauchy 1821), was used to understand fundamental aspects of the real numbers and the importance of regularity assumptions in mathematical analysis. Since then, the equation has been abstracted and examined in many contexts. One such examination, introduced by Stanislaw Ulam and furthered by Donald Hyers, was that of stability. Hyers demonstrated that Cauchy's equation exhibited stability over Banach Spaces in the following sense: functions that approximately satisfy Cauchy's equation are approximated with the same level of error by functions …

Waste Treatment Facility Location For Hotel Chains, Dolores R. Santos-Peñate, Rafael R. Suárez-Vega, Carmen Florido De La Nuez

ITSA 2022 Gran Canaria - 9th Biennial Conference: Corporate Entrepreneurship and Global Tourism Strategies After Covid 19

Tourism generates huge amounts of waste. About half of the waste generated by hotels is food and garden bio-waste. This bio-waste can be used to make compost and pellets. In turn, pellets can be used as an absorbent material in composters and as an energy source. We consider the problem of locating composting and pellet-making facilities so that the bio-waste generated by a chain of hotels can be managed at or close to the generation points. An optimization model is applied to locate the facilities and allocate the waste and products, and several scenarios are analysed. The study shows that, …