Physical Sciences and Mathematics Commons^™

Implementation Of An Occupancy-Based Monitoring Protocol For A Widespread And Cryptic Species, The New England Cottontail (Sylvilagus Transitionalis), Colin P. Shea, Mitchell J. Eaton, Darryl I. Mackenzie

United States Geological Survey: Staff Publications

Context. Designing effective long-term monitoring strategies is essential for managing wildlife populations. Implementing a cost-effective, practical monitoring program is especially challenging for widespread but locally rare species. Early successional habitat preferred by the New England cottontail (NEC) has become increasingly rare and fragmented, resulting in substantial declines from their peak distribution in the mid-1900s. The introduction of a possible competitor species, the eastern cottontail (EC),may also have played a role. Uncertainty surrounding how these factors have contributed to NEC declines has complicated management and necessitated development of an appropriate monitoring framework to understand possible drivers of distribution and dynamics.

Aims. …

Spatial Conservation Planning Under Uncertainty: Adapting To Climate Change Risks Using Modern Portfolio Theory, Mitchell J. Eaton, Simeon Yurek, Zulqarnain Haider, Julien Martin, Fred Johnson, Bradley J. Udell, Hadi Charkhgard, Changhyun Kwon

United States Geological Survey: Staff Publications

Climate change and urban growth impact habitats, species, and ecosystem services. To buffer against global change, an established adaptation strategy is designing protected areas to increase representation and complementarity of biodiversity features. Uncertainty regarding the scale and magnitude of landscape change complicates reserve planning and exposes decision makers to the risk of failing to meet conservation goals. Conservation planning tends to treat risk as an absolute measure, ignoring the context of the management problem and risk preferences of stakeholders. Application of risk management theory to conservation emphasizes the diversification of a portfolio of assets, with the goal of reducing the …

Coastal Wetlands: A Synthesis, Charles S. Hopkinson, Eric Wolanski, Mark M. Brinson, Daonald R. Cahoon, Gerardo M.E. Perillo

United States Geological Survey: Staff Publications

What are coastal wetland ecosystems, what are their limits of distribution, and where do they exist in the overall coastal landscape? There are several general definitions for wetlands, but the Ramsar definition is likely the most broadly encompassing (http://www.ramsar. org/), whereas others are more focused definitions tailored to country-specific protection and management policies (Mitsch and Gosselink, 2006). We offer a very general approach rather than a precise definition: coastal wetlands are ecosystems that are found within an elevation gradient that ranges between subtidal depths where light penetrates to support photosynthesis of benthic plants to the landward edge where the sea …

Promoting Change In Common Tern (Sterna Hirundo) Nest Site Selection To Minimize Construction Related Disturbance., Peter C. Mcgowan, Jeffery D. Sullivan, Carl R. Callahan, William Schultz, Jennifer L. Wall, Diann J. Prosser

United States Geological Survey: Staff Publications

Due to the many challenges facing waterbird populations (Jia et al. 2018, Wetlands International 2018), it has become common practice to limit disturbance to breeding colonies whenever possible to maximize reproductive success. While this may require often unpopular management techniques including beach closures (Jorgensen et al. 2015, Mayo et al. 2015) and predator removal (Neuman et al. 2004, Stocking et al. 2017), such actions are sometimes necessary for the success of the colony. However, there are instances when eliminating disturbance is not possible and birds must be attracted to a new site. A common method for attracting waterbirds to a …

Optimizing Historic Preservation Under Climate Change: Decision Support For Cultural Resource Adaptation Planning In National Parks, Xiao Xiao, Erin Seekamp, Max Post Van Der Burg, Mitchell Eaton, Sandra Fatorić, Allie Mccreary

United States Geological Survey: Staff Publications

Climate change poses great challenges for cultural resource management, particularly in coastal areas. Cultural resources, such as historic buildings, in coastal areas are vulnerable to climate impacts including inundation, deterioration, and destruction from sea-level rise and storm-related flooding and erosion. However, research that assesses the trade-offs between actions for protecting vulnerable and valuable cultural resources under bud- getary constraints is limited. This study focused on developing a decision support model for managing historic buildings at Cape Lookout National Seashore. We designed the Optimal Preservation Decision Support (OptiPres) model to: (a) identify optimal, annual adaptation actions for historic buildings across a …

Assessment Of Chronic Low-Dose Elemental And Radiological Exposures Of Biota At The Kanab North Uranium Mine Site In The Grand Canyon Watershed, Danielle Cleveland, Jo Ellen Hinck, Julia S. Lankton

United States Geological Survey: Staff Publications

High-grade U ore deposits are in various stages of exploitation across the Grand Canyon watershed, yet the effects of U mining on ecological and cultural resources are largely unknown. Wecharacterized the concentrations of Al, As, Bi, Cd, Co, Cu, Fe, Pb, Hg, Mo, Ni, Se, Ag, Tl, Th, U, and Zn, gross alpha and beta activities, and U and Th radioisotopes in soil, vegetation (Hesperostipa comata, Artemisia tridentata, Tamarix chinensis), and rodents (Peromyscus maniculatus, P. boylii) to waste material at the Kanab North mine, a mine with decades-long surficial contamination, and compared the concentrations (P<0.01) to those at a premining site (Canyon Mine). Rodent tissues were also analyzed for radium-226 and microscopic lesions. Radioactivities and some elemental concentrations (e.g., Co, Pb, U) were greater in the Kanab North mine biological samples than in Canyon Mine biota, indicating a mining-related elemental signature. Mean rodent Ra-226 (111 Bq/kg dry weight [dry wt]) was 3 times greater than expected, indicating radioactive disequilibrium. Multiple soil sample U concentrations exceeded a screening benchmark, growth inhibition thresholds for sensitive plants, and an EC20 for a soil arthropod. Lesions associated with metals exposure were also observed more frequently in rodents at Kanab North than those at Canyon Mine but could not be definitively attributed to U mining. Our results indicate that Kanab North biota have taken up U mining-related elements owing to chronic exposure to surficial contamination. However, no literature-based effects thresholds for small rodents were exceeded, and only a few soil and vegetation thresholds for sensitive species were exceeded; therefore, adverse effects to biota from U mining-related elements at Kanab North are unlikely despite chronic exposure.

Crustal Structure Of Mesozoic Rifting In The Northeastern Gulf Of Mexico From Integration Of Seismic And Potential Fields Data, Mei Liu, Irina Filina, Paul Mann

Department of Earth and Atmospheric Sciences: Faculty Publications

We have investigated the crustal structure of a 400 km wide zone of thinned continental crust in the northeastern Gulf of Mexico (GOM) using gravity and magnetic modeling along two deeply penetrated seismic transects. Using this approach, we identify two zones of prominent, southward-dipping reflectors associated with 7–10 km thick, dense, and highly magnetic material. Previous workers have interpreted the zones as either coarse clastic redbeds of Mesozoic age that are tilted within half-grabens or seaward-dipping reflectors of magmatic origin. Both seismic reflection lines reveal a 10 km thick and 67 km wide northern zone of high density near the …

Age And Pattern Of The Southern High-Latitude Continental End-Permian Extinction Constrained By Multiproxy Analysis, Christopher R. Fielding, Tracy D. Frank, Stephen Mcloughlin, Vivi Vajda, Chris Mays, Allen P. Tevyaw, Arne Winguth, Cornelia Winguth, Robert S. Nicoll, Malcom Bocking, James L. Crowley

Department of Earth and Atmospheric Sciences: Faculty Publications

Past studies of the end-Permian extinction (EPE), the largest biotic crisis of the Phanerozoic, have not resolved the timing of events in southern high-latitudes. Here we use palynology coupled with high-precision CA-ID-TIMS dating of euhedral zircons from continental sequences of the Sydney Basin, Australia, to show that the collapse of the austral Permian Glossopteris flora occurred prior to 252.3 Ma (~370 kyrs before the main marine extinction). Weathering proxies indicate that floristic changes occurred during a brief climate perturbation in a regional alluvial landscape that otherwise experienced insubstantial change in fluvial style, insignificant reorganization of the depositional surface, and no …

Hexagonal Fracture Patterns On Navajo Sandstone Crossbeds At Yellow Knolls, Washington County, David Loope

Department of Earth and Atmospheric Sciences: Faculty Publications

At this geosite, the main features of interest—remarkably uniform and beautiful fracture patterns dominantly composed of linked hexagons (fi gures 1 and 2)—are present on outcrops of the Jurassic Navajo Sandstone. Th e Navajo was deposited by large, southward- migrating desert dunes about 200 million years ago, but the fractures that defi ne the hexagons here are just a surfi cial veneer less than 20 inches (half a meter) deep. Th e fractures are a weathering phenomenon that developed under climate conditions similar to today’s. Steep thermal gradients develop in the sandstone because it is exposed to solar radiation and …

Developing A Department Of Transportation Winter Severity Index, Curtis L. Walker, Dylan Steinkruger, Pouya Gholizadeh, Sogand Hasanzedah, Mark Anderson, Behzad Esmaeili

Department of Earth and Atmospheric Sciences: Faculty Publications

Adverse weather conditions are responsible for millions of vehicular crashes, thousands of deaths, and billions of dollars per year in economic and congestion costs. Many transportation agencies utilize a performance or mobility metric to assess how well they maintain road access; however, there is only limited consideration of meteorological impacts to the success of their operations. This research develops the Nebraska winter severity index (NEWINS), which is a daily event-driven index derived for the Nebraska Department of Transportation (NDOT). The NEWINS includes a categorical storm classification framework to capture atmospheric conditions and possible road impacts across diverse spatial regions of …

A Doubly Nonlocal Laplace Operator And Its Connection To The Classical Laplacian, Petronela Radu, Kelseys Wells

Department of Mathematics: Faculty Publications

In this paper, motivated by the state-based peridynamic frame- work, we introduce a new nonlocal Laplacian that exhibits double nonlocality through the use of iterated integral operators. The operator introduces addi- tional degrees of exibility that can allow for better representation of physical phenomena at different scales and in materials with different properties. We study mathematical properties of this state-based Laplacian, including connec- tions with other nonlocal and local counterparts. Finally, we obtain explicit rates of convergence for this doubly nonlocal operator to the classical Laplacian as the radii for the horizons of interaction kernels shrink to zero.

Persistence Metrics For A River Population In A Two-Dimensional Benthic-Drift Model, Yu Jin, Qihua Huang, Julia Blackburn, Mark A. Lewis

Department of Mathematics: Faculty Publications

The study of population persistence in river ecosystems is key for understanding population dynamics, invasions, and instream flow needs. In this paper, we extend theories of persistence measures for population models in one-dimensional rivers to a benthic-drift model in two-dimensional depth- averaged rivers. We define the fundamental niche and the source and sink metric, and establish the net reproductive rate R₀ to determine global persistence of a population in a spatially heterogeneous two-dimensional river. We then couple the benthic-drift model into the two-dimensional computational river model, River2D, to study the growth and persistence of a population and its source …

Ephemeral Gully Erosion Modeling And Surveying With Close-Range Digital Photogrammetry, M. A. Islam, C. Weerasekara, Y. Zhou, A. Y. Shesukov

Conservation and Survey Division: Faculty and Staff Publications

No abstract provided.

Conceptualizing Ecological Responses To Dam Removal: If You Remove It, What’S To Come?, J. Ryan Bellmore, G. R. Press, Jeffrey J. Duda, Jim E. O'Connor, Amy E. East, Melissa M. Foley, Andrew C. Wilcox, Jon J. Major, Patrick Shafroth, Sarah A. Morley, Christopher S. Magirl, Chauncey W. Anderson, James E. Evans, Laura Shawn Craig

School of Earth, Environment and Society Faculty Publications

One of the desired outcomes of dam decommissioning and removal is the recovery of aquatic and riparian ecosystems. To investigate this common objective, we synthesized information from empirical studies and ecological theory into conceptual models that depict key physical and biological links driving ecological responses to removing dams. We define models for three distinct spatial domains: upstream of the former reservoir, within the reservoir, and downstream of the removed dam. Emerging from these models are response trajectories that clarify potential pathways of ecological transitions in each domain. We illustrate that the responses are controlled by multiple causal pathways and feedback …

Improving Student Achievement Through The Implementation Of A Classroom Performance System, Stacy Maria Artis

Theses and Dissertations

This applied dissertation was designed to implement and examine the impact of a classroom performance system (CPS) on student achievement for Grade 9 mathematics students. Seventy-five students in 4 Coordinate Algebra classes were observed during the regular school day for 9 weeks. The treatment group received CPS-based instruction, and the control group received traditional mathematics instruction without the use of a CPS. The teacher was the same for all classes.

Data from benchmark assessments as well as quarterly grade reports were compared for both groups. The findings of this study showed mixed results in relation to the impact of CPS-based …

Contextual Bandit Modeling For Dynamic Runtime Control In Computer Systems, Jason Hiebel

Dissertations, Master's Theses and Master's Reports

Modern operating systems and microarchitectures provide a myriad of mechanisms for monitoring and affecting system operation and resource utilization at runtime. Dynamic runtime control of these mechanisms can tailor system operation to the characteristics and behavior of the current workload, resulting in improved performance. However, developing effective models for system control can be challenging. Existing methods often require extensive manual effort, computation time, and domain knowledge to identify relevant low-level performance metrics, relate low-level performance metrics and high-level control decisions to workload performance, and to evaluate the resulting control models.

This dissertation develops a general framework, based on the contextual …

A Bioeconomic Model For The Optimization Of Local Canine Rabies Control, Aaron Anderson, Johann Kotze, Stephanie A. Shwiff, Brody Hatch, Chris Slootmaker, Anne Conan, Darryn Knobel, Louis H. Nel

United States Department of Agriculture Wildlife Services: Staff Publications

We present a new modeling tool that can be used to maximize the impact of canine rabies management resources that are available at the local level. The model is accessible through a web-based interface that allows for flexibility in the management strategies that can be investigated. Rabies vaccination, sterilization, chemo-contraception, and euthanasia can be specified and limited to specific demographic groups. Additionally, we allowed for considerable complexity in the specification of management costs. In many areas, the costs of contacting additional dogs increases as management effort increases, and this can have important strategic implications. We illustrated the application of the …

Polymerization Of Bromoundecylacrylate And Alkylating Methylimidazole, Shuziao Li

Master's Theses and Doctoral Dissertations

Polymerized ionic liquids (PIL) generally are solids, but a few examples have been reported that also exhibit liquidity in the neighborhood of room temperature called liquid polymerized ionic liquids (LPIL). The development of a platform suitable for exploring LPIL properties based on the monomer 11-bromoundecylacrylate (AcC11Br) was reported. Poly(AcC11Br) is itself a liquid polymer and can be easily used to alkylate 1-methylimidazole to produce poly(AcC11C1ImBr-co- AcC11Br). Various reaction conditions were explored to examine how extensively 1- methylimidazole can be attached to this polymer, and the extent of alkylation is determined quantitatively by silver ion potentiometry. These polymers retain liquidity at …

Designing A Modified Zeeman Slower For The Paschen-Back Magnetic Regime, Leo Michael Nofs

Master's Theses and Doctoral Dissertations

Controlled study of high-density plasmas, such as those found in fusion reactions and stars, is difficult due to their highly-magnetized environments. A specialized high magnetic field (High-B) trap was developed at the University of Michigan in Georg Raithel's research group to study such highly magnetized, high density plasmas using rubidium atoms. By replacing the atom source with a Zeeman slower, a well-studied device to slow and cool atoms, the atom flux could be increased by a factor more than 1000, leading to higher High-B plasma densities. The goal of this project is to design a Zeeman slower that differs from …

The Effect Of Neonicotinoids On Apis Mellifera: A Revisit, Qingchen Liang

Master's Theses and Doctoral Dissertations

Colony collapse disorder (CCD), which has caused high colony mortality rates in the European honeybee (Apis mellifera), is a pressing economical and ecological problem. I revisited Woodcock et al.'s (2017a) paper, "Country-specic Effects of Neonicotinoid Pesticides on Honey Bees and Wild Bees", in light of unsound statistical methods used in the original study. In the first part of this paper, I attempted to replicate the analysis underlying key findings in the original paper. In the second part, I reanalyzed the data using mostly non-parametric methods in order to obtain robust results. I did not find any evidence for a harmful …

Transfer Learning For Detecting Unknown Network Attacks, Juan Zhao, Sachin Shetty, Jan Wei Pan, Charles Kamhoua, Kevin Kwiat

VMASC Publications

Network attacks are serious concerns in today’s increasingly interconnected society. Recent studies have applied conventional machine learning to network attack detection by learning the patterns of the network behaviors and training a classification model. These models usually require large labeled datasets; however, the rapid pace and unpredictability of cyber attacks make this labeling impossible in real time. To address these problems, we proposed utilizing transfer learning for detecting new and unseen attacks by transferring the knowledge of the known attacks. In our previous work, we have proposed a transfer learning-enabled framework and approach, called HeTL, which can find the common …

Dimensionality And Factorial Invariance Of Religiosity Among Christians And The Religiously Unaffiliated: A Cross-Cultural Analysis Based On The International Social Survey Programme, Carlos Miguel Lemos, Ross Joseph Gore, Ivan Puga-Gonzalez, F. Leron Shults

VMASC Publications

We present a study of the dimensionality and factorial invariance of religiosity for 26 countries with a Christian heritage, based on the 1998 and 2008 rounds of the International Social Survey Programme (ISSP) Religion survey, using both exploratory and multi-group confirmatory factor analyses. The results of the exploratory factor analysis showed that three factors, common to Christian and religiously unaffiliated respondents, could be extracted from our initially selected items and suggested the testing of four different three-factor models using multi-group confirmatory factor analysis. For the model with the best fit and measurement invariance properties, we labeled the three resulting factors …

Adaptive Signatures In Thermal Performance Of The Temperate Coral Astrangia Poculata, H. E. Aichelman, Richard C. Zimmerman, Daniel J. Barshis

Biological Sciences Faculty Publications

Variation in environmental characteristics and divergent selection pressures can drive adaptive differentiation across a species' range. Astrangia poculata is a temperate scleractinian coral that provides unique opportunities to understand the roles of phenotypic plasticity and evolutionary adaptation in coral physiological tolerance limits. A. poculata inhabits hard bottom ecosystems from the northwestern Atlantic to the Gulf of Mexico and withstands an annual temperature range up to 20° C. Additionally, A. poculata is facultatively symbiotic and co-occurs in both symbiotic ("brown") and aposymbiotic ("white") states. Here, brown and white A. poculata were collected from Virginia (VA) and Rhode Island (RI), USA and …

Sponges Structure Water-Column Characteristics In Shallow Tropical Coastal Ecosystems, Marla M. Valentine, Mark J. Butler Iv

Biological Sciences Faculty Publications

Sponges can have powerful effects on ecosystem processes in shallow tropical marine ecosystems. They drive benthic-pelagic coupling by filtering dissolved and particulate organic matter from the water column, alter water chemistry in association with their symbiotic microorganisms, and increase habitat structural complexity. Anthropogenic degradation of coastal waters is widespread and can reduce the density and diversity of foundation species such as sponges, potentially diminishing their contributions to ecosystem processes. We used a novel mesocosm design that minimized artifacts associated with traditional single-species and closed-system filtration experiments to examine the effects of water turnover and sponge biomass on water-column properties. Using …

Writing And Evaluating The Effectiveness Of A Modern Physics Laboratory Manual, Brendan Jacob Pickard

Master's Theses and Doctoral Dissertations

Undergraduate physics laboratory activities are the main way that students get to apply physics concepts and develop experimental skills. Consequently, the presentation of experimental techniques is exceedingly important, and a poorly constructed guide could hinder student success. I have created a lab manual for use in PHY 372 Modern Physics Laboratory at Eastern Michigan University (EMU). This lab manual helps students develop experimental skills valuable in their future careers in a variety of fields. I evaluated the teaching effectiveness of the lab manual using a survey at the end of the Fall 2017 semester, revised the lab manual, and evaluated …

A Gene Based Approach To Test Genetic Association Based On An Optimally Weighted Combination Of Multiple Traits., Jianjun Zhang, Qiuying Sha, Guanfu Liu, Xuexia Wang

Michigan Tech Publications, Part 1

There is increasing evidence showing that pleiotropy is a widespread phenomenon in complex diseases for which multiple correlated traits are often measured. Joint analysis of multiple traits could increase statistical power by aggregating multiple weak effects. Existing methods for multiple trait association tests usually study each of the multiple traits separately and then combine the univariate test statistics or combine p-values of the univariate tests for identifying disease associated genetic variants. However, ignoring correlation between phenotypes may cause power loss. Additionally, the genetic variants in one gene (including common and rare variants) are often viewed as a whole that affects …

Laser-Induced Plasma Analysis For Surrogate Nuclear Debris, Michael B. Shattan, John Auxier, A. C. Stowe, Christian G. Parigger

Faculty Publications

This work identifies analytical lines in laser-induced plasma for chemical analyses of major elements found in surrogate nuclear debris. These lines are evaluated for interferences and signal strength to insure they would be useful to measure relative concentrations. Compact, portable instruments are employed and can be included as part of a mobile nuclear forensics laboratory for field screening of nuclear debris and contamination. The average plasma temperature is measured using the well-established Boltzmann plot technique, and plasma's average electron density is determined using empirical formulae based on Stark broadening of the H-alpha line. These measurements suggest existence of partial local …

Ebullition Of Oxygen From Seagrasses Under Supersaturated Conditions, Matthew H. Long, Kevin Sutherland, Scott D. Wankel, David J. Burdige, Richard C. Zimmerman

OES Faculty Publications

Gas ebullition from aquatic systems to the atmosphere represents a potentially important fraction of primary production that goes unquantified by measurements of dissolved gas concentrations. Although gas ebullition from photosynthetic surfaces has often been observed, it is rarely quantified. The resulting underestimation of photosynthetic activity may significantly bias the determination of ecosystem trophic status and estimated rates of biogeochemical cycling from in situ measures of dissolved oxygen. Here, we quantified gas ebullition rates in Zostera marina meadows in Virginia, U.S.A. using simple funnel traps and analyzed the oxygen concentration and isotopic composition of the captured gas. Maximum hourly rates of …

Maia: A Language For Mandatory Integrity Controls Of Structured Data, Wassnaa Al-Mawee, Paul Bonamy, Steven Carr, Jean Mayo

Michigan Tech Publications, Part 1

The integrity of systems files is necessary for the secure functioning of an operating system. Integrity is not generally discussed in terms of complete computer systems. Instead, integrity issues tend to be either tightly coupled to a particular domain (e.g. database constraints), or else so broad as to be useless except after the fact (e.g. backups). Often, file integrity is determined by who modifies the file or by a checksum. This paper focuses on a general model of the internal integrity of a file. Even if a file is modified by a subject with trust or has a valid checksum, …

First Generation Amperometric Biosensing Of Galactose With Xerogel-Carbon Nanotube Layer-By-Layer Assemblies, Najwa Labban, Mulugeta B. Wayu, Ciara M. Steele, Tess S. Munoz, Julie A. Pollock, William S. Case, Michael C. Leopold

Chemistry Faculty Publications

A first-generation amperometric galactose biosensor has been systematically developed utilizing layer-by-layer (LbL) construction of xerogels, polymers, and carbon nanotubes toward a greater fundamental understanding of sensor design with these materials and the potential development of a more efficient galactosemia diagnostic tool for clinical application. The effect of several parameters (xerogel silane precursor, buffer pH, enzyme concentration, drying time and the inclusion of a polyurethane (PU) outer layer) on galactose sensitivity were investigated with the critical nature of xerogel selection being demonstrated. Xerogels formed from silanes with medium, aliphatic side chains were shown to exhibit significant enhancements in sensitivity with the …