Physical Sciences and Mathematics Commons^™

Activity Of Analogs Of Anticancer Drugs On The Serine Protease Enzymes Subtilisin And Chymotrypsin, Dhatri Ravipati

Masters Theses & Specialist Projects

The anticancer activity of several platinum compounds is due to the formation of complexes with DNA. We hypothesize that the size and shape of the platinum compounds would impact interaction with proteins, and these interactions may be partly responsible for the anticancer activity. Chymotrypsin and subtilisin are serine proteases that have a histidine residue in the active site. We are investigating the inhibition of the digestive enzymes chymotrypsin and subtilisin by analogs of the anticancer drug cisplatin and trying to discern trends in the inhibition as the active site residues vary. In our research, we found that the enzyme subtilisin …

Co2 Sequestration In Basalt: Carbonate Mineralization And Fluid Substitution, Thomas L. Otheim, Ludmila Adam, Kasper Van Wijk, Michael L. Batzle, Travis Mcling, Robert Podgorney

CGISS Publications and Presentations

Geologicalsequestration of carbon dioxide in deep reservoirs may provide alarge-scale option for reducing the emissions of this gas intothe atmosphere. The effectiveness of sequestration depends on the storagecapacity and stability of the reservoir and risk of leakageinto the overburden. Reservoir rocks can react with a CO₂-watermixture, potentially resulting in the precipitation of minerals in theavailable matrix pore space and within pre-existing fractures. This inducedmineralization may form internal seals that could help mitigate theleakage of CO₂ into the overburden. For basaltic host rocks,carbonic acid partially dissolves minerals in the host rock, suchas the calcium plagioclase mineral, freeing various …

Missouri National Recreational River, Natural Resource Condition Assessment, Kevin J. Stark, Lucas J. Danzinger, Michael R. Komp, Andy J. Nadeau, Shannon Amberg, Eric J. Iverson, David Kadlec, Barry Drazkowski

United States National Park Service: Publications

Executive Summary

As a unit in the National Park Service (NPS), Missouri National Recreational River (MNRR) is responsible for the management and conservation of natural resources within its boundaries. This mandate is supported by the National Park Service Organic Act of 1916, which directs the NPS to:

conserve the scenery and natural and historic objects and the wildlife therein and to provide for the enjoyment of the same in such a manner and by such means as will leave them unimpaired for the enjoyment of future generations.

In 2003, NPS Water Resources Division received funding through the Natural Resource Challenge …

Making An Impact On The Obesity Epidemic By Deploying A Mobile Fitness Suite On The Android Market, Chad Richards

Computer Science and Computer Engineering Undergraduate Honors Theses

The Mobile Fitness Suite aims to make an impact on the obesity epidemic by deploying a set of mobile fitness applications on the Android Market. The thesis details the health and financial issues with the obesity epidemic, along with its causes, and how a set of fitness applications can aid with the obesity epidemic. It also explains the reasons for releasing the program on the Android Market and details each step in the process of deploying a mobile application to the Android Market. Further, it discusses the design and architecture that went into the development of the Mobile Fitness Suite …

Bases And Applications Of Riemann-Roch Spaces Of Function Fields With Many Rational Places, Justin Peachey

All Dissertations

Algebraic geometry codes are generalizations of Reed-Solomon codes, which are implemented in nearly all digital communication devices. In ground-breaking work, Tsfasman, Vladut, and Zink showed the existence of a sequence of algebraic geometry codes that exceed the Gilbert-Varshamov bound, which was previously thought unbeatable. More recently, it has been shown that multipoint algebraic geometry codes can outperform comparable one-point algebraic geometry codes. In both cases, it is desirable that these function fields have many rational places. The prototypical example of such a function field is the Hermitian function field which is maximal. In 2003, Geil produced a new family of …

Mechanical And Modular Verification Condition Generation For Object-Based Software, Heather Harton

All Dissertations

The foundational goal of this work is the development of mechanizable proof rules and a verification condition generator based on those rules for modern software. The verification system will be modular so that it is possible to verify the implementation of a component relying upon only the specifications of underlying components that are reused. The system must enable full behavioral verification. The proof rules used to generate verification conditions (VCs) of correctness must be amenable to automation. While automation requires software developers to annotate implementations with assertions, it should not require assistance in the proofs. This research has led to …

Modification And Characterization Of Fluorescent Conjugated Polymer Nanoparticles For Single Molecule Detection, Yueli Zheng

All Dissertations

Single molecule tracking using fluorescent dye or nanoparticle labels has emerged as a useful technique for probing biomolecular processes. Considerable interest arises in the development of nanoparticle labels with brighter fluorescence in order to improve the spatial and temporal resolution of single molecule detection and to facilitate the application of single molecule detection methods to a wider range of intracellular processes. The McNeill laboratory recently reported that conjugated polymer nanoparticles exhibit fluorescence cross-sections roughly 10-100 times higher than other luminescent nanoparticles of similar size, excellent photostability (2.2×108 photons emitted per nanoparticle prior to photobleaching), and saturated emission rates roughly 100 …

Fractal Jackson Networks, Mahmoud Rezaei

All Dissertations

In this dissertation, Gaussian random measures that arise as limits of Jackson networks. The support of the random measure is a fractal having Hausdorff dimension delta . The variance measure is the Hausdorff measure also of dimension delta.

Simulated Effects Of Varied Landscape-Scale Fuel Treatments On Carbon Dynamics And Fire Behavior In The Klamath Mountains Of California, Kevin J. Osborne

Master's Theses

I utilized forest growth model (FVS-FFE) and fire simulation software (FlamMap, Randig), integrated through GIS software (ArcMap9.3), to quantify the impacts varied landscape-scale fuel treatments have on short-term onsite carbon loss, long-term onsite carbon storage, burn probability, conditional flame length, and mean fire size. Thirteen fuel treatment scenarios were simulated on a 42,000 hectare landscape in northern California: one untreated, three proposed by the US Forest Service, and nine that were spatially-optimized and developed with the Treatment Optimization Model in FlamMap. The nine scenarios developed in FlamMap varied by treatment intensity (10%, 20%, and 30% of the landscape treated) and …

Adhesion And Durability Of Coatings On Polypropylene Exterior Sidings, Logan Riekio Stark

Master's Theses

Plastics have become a universal material for use in a myriad of commercial and consumer products. One such product, exterior siding, is the focus of this project. Although siding products were originally made from wood, vinyl siding, which offered superior performance, was introduced in the 1950’s. More recently, polypropylene (PP) siding has been introduced; PP provides a stronger product, which allows for deeper patterns and better edge detailing. PP siding, compared to traditional wood siding, doesn’t warp, crack, or degrade as easily with extended exposure to the elements, and is cheaper to maintain. However, even plastic siding must be coated. …

Pattern Avoiding Partitions, Sequence A054391 And The Kernel Method, Toufik Mansour, Mark Shattuck

Applications and Applied Mathematics: An International Journal (AAM)

Sequence A054391 in OEIS, which we will denote by a_n , counts a certain two-pattern avoidance class of the permutations of size n . In this paper, we provide additional combinatorial interpretations for these numbers in terms of finite set partitions. In particular, we identify six classes of the partitions of size n , all of which have cardinality a_n and each avoiding two classical patterns. We use both algebraic and combinatorial methods to establish our results. In one apparently more difficult case, to show the result, we make use of the kernel method in solving a system …

Mathematical Modeling Of Peristaltic Flow Of Chyme In Small Intestine, Daniel N. Riahi, Ranadhir Roy

Applications and Applied Mathematics: An International Journal (AAM)

Mathematical models based on axisymmetric Newtonian incompressible fluid flow are studied for the peristaltic flow of chyme in the small intestines, which is an axisymmetric cylindrical tube. The flow is modeled more realistically modeled by assuming that the peristaltic rush wave is a non-periodic mode composed of two sinusoidal waves of different wavelengths, which propagate at the same speed along the outer boundary of the tube. Both cases of flow in a tube and in an annulus that are modeled and investigated in the present paper correspond respectively to the cases of flow of chyme in the small intestine in …

A Stochastic Version Of The Em Algorithm To Analyze Multivariate Skew-Normal Data With Missing Responses, M. Khounsiavash, M. Ganjali, T. Baghfalaki

Applications and Applied Mathematics: An International Journal (AAM)

In this paper an algorithm called SEM, which is a stochastic version of the EM algorithm, is used to analyze multivariate skew-normal data with intermittent missing values. Also, a multivariate selection model framework for modeling of both missing and response mechanisms is formulated. By the SEM algorithm missing values of responses are inputed by the conditional distribution of missing values given observed data and then the log-likelihood of the pseudocomplete data is maximized. The algorithm is iterated until convergence of parameter estimates. Results of an application are also reported where a Bootstrap approach is used to compute the standard error …

Peristaltic Induced Flow Of A Two-Layered Suspension In Non-Uniform Channel, Amit Medhavi, Dharmendra Singh, Ajay S. Yadav, Ramesh S. Gautam

Applications and Applied Mathematics: An International Journal (AAM)

Peristaltic transport of a two-layered particulate suspension in a non-uniform channel has been investigated. The coupled differential equations for both the fluid and the particle phases in the central as well as in the peripheral layers have been solved and the expression for the flow rate, the pressure rise and the friction force has been derived. The results obtained are discussed both qualitatively and quantitatively in brief. The significance of the particle concentration as well as the peripheral layer has been well explained.

Reflection Of Waves In Transversely Isotropic Thermoelastic Solid, Raj R. Gupta

Applications and Applied Mathematics: An International Journal (AAM)

The main objective of the present paper is to study the propagation of waves in the transversely isotropic medium in the context of thermoelasticity with GN theory of type-II and III. By imposing the boundary conditions on the components of displacement, stresses and temperature distribution, wave equation have been solved. Numerically simulated results have been plotted graphically with respect to frequency to evince the effect of anisotropy. Keywords: Thermoelasticity, transversely isotropic, reflection, plane wave AMS 2010 No.: 74JXX, 74F, 74B, 80A. 1. Introduction In last three decades, non-classical theories involving finite speed of heat transportation in elastic solids have been …

The Principle Of Linearized Stability For Size-Structured Population Models, M. El-Doma

Applications and Applied Mathematics: An International Journal (AAM)

The principle of linearized stability for size-structured population dynamics models is proved giving validity to previous stability results reported in, for example, El-Doma (2008-1). In particular, we show that if all the roots of the characteristic equation lie to the left of the imaginary axis then the steady state is locally exponentially stable, and on the other hand, if there is at least one root that lies to the right of the imaginary axis then the steady state is unstable. We also point out cases when there is resonance

Nonlinear Ordinary Differential Equations In Fluid Dynamics, John D. Ramshaw

Physics Faculty Publications and Presentations

The equivalence between nonlinear ordinary differential equations (ODEs) and linear partial differential equations (PDEs) was recently revisited by Smith, who used the equivalence to transform the ODEs of Newtonian dynamics into equivalent PDEs, from which analytical solutions to several simple dynamical problems were derived. We show how this equivalence can be used to derive a variety of exact solutions to the PDEs describing advection in fluid dynamics in terms of solutions to the equivalent ODEs for the trajectories of Lagrangian fluid particles. The PDEs that we consider describe the time evolution of non-diffusive scalars, conserved densities, and Lagrangian surfaces advected …

Density Dependent Utilities With Transaction Costs, Eriyoti Chikodza, Julius N Esunge

Communications on Stochastic Analysis

No abstract provided.

Consistent Price Systems For Bounded Processes, Florian Maris, Eric Mbakop, Hasanjan Sayit

Communications on Stochastic Analysis

No abstract provided.

A Martingale Representation For The Maximum Of A Lévy Process, Bruno Rémillard, Jean-François Renaud

Communications on Stochastic Analysis

No abstract provided.

Changes Of Measure And Representations Of The First Hitting Time Of A Bessel Process, Gerardo Hernandez-Del-Valle

Communications on Stochastic Analysis

No abstract provided.

A Connection Between The Poissonian Wick Product And The Discrete Convolution, Alberto Lanconelli, Luigi Sportelli

Communications on Stochastic Analysis

No abstract provided.

Stochastic Analysis Of Backward Tidal Dynamics Equation, Hong Yin

Communications on Stochastic Analysis

No abstract provided.

Intraday Empirical Analysis Of Electricity Price Behaviour, Eckhard Platen, Jason West

Communications on Stochastic Analysis

No abstract provided.

Network Covert Channels On The Android Platform, Wade Chester Gasior

Masters Theses and Doctoral Dissertations

Network covert channels are used to exfiltrate information from a secured environment in a way that is extremely difficult to detect or prevent. These secret channels have been identified as an important security threat to governments and the private sector, and several research efforts have focused on the design, detection, and prevention of such channels in enterprise-type environments. Mobile devices have become a ubiquitous computing platform, and are storing or have access to an increasingly large amount of sensitive information. As such, these devices have become prime targets of attackers who desire access to this information. In this work, we …

Electrical Detection Of Mechanical Resonance In Nanotubes And Semiconducting Nanowires, Doyl Dickel

All Dissertations

In recent years, there has been substantial interest in the development of microelectro-mechanical systems (MEMS) and even nanoelectro-mechanical systems (NEMS) for use in a wide variety of applications both as experimental tools (refs) and in a continuing effort to decrease the size and cost and increase the efficiency of electrical components. In particular, cantilevered nanometer beams have been a recent focus due to a number of interesting properties, including enhanced field emission, high tensile strength, and piezoelectric properties. The ability to accurately determine the electrical and mechanical properties of these cantilevers is paramount in assessing their feasibility as MEMS and …

Single Particle And Ensemble Spectroscopy Of Conjugated Polymer Nanoparticles And Their Development For Photodynamic Therapy, Jennifer Grimland

All Dissertations

Energy transport in conjugated polymers is the combination of energy transfer and exciton diffusion. There is considerable ongoing research in this field, converging to develop better organic photovoltaics, polymer light emitting diodes (PLEDs) and organic solar cells, to name a few. One way these phenomena can be explored is by doing solution dependent studies on conjugated polymer nanoparticles. With experiments on CP dots in an aqueous solution and the addition of a water miscible organic solvent in varying concentrations, dynamics occurring in the folding process can be better understood, and also exciton and fluorescence quenching properties can be extracted as …

Medicine Through The Ages: An Incision Into Surgery's Beginnings, Anna Dardick

The Synapse: Intercollegiate science magazine

No abstract provided.

Jay Meijia On Bipolar Disorder, Hillary Mulan

The Synapse: Intercollegiate science magazine

No abstract provided.

The Distribution And Reproductive Success Of The Western Snowy Plover Along The Oregon Coast - 2011, David J. Lauten, Kathleen J. Castelein, J. Daniel Farrar, Adam A. Kotaich, Eleanor P. Gaines

Institute for Natural Resources Publications

From 6 April – 19 September 2011 we monitored the distribution, abundance and productivity of the federally Threatened Western Snowy Plover (Charadrius nivosus nivosus) along the Oregon coast. From north to south, we surveyed and monitored plover activity at Sutton Beach, Siltcoos River estuary, the Dunes Overlook, North Tahkenitch Creek, Tenmile Creek, Coos Bay North Spit, Bandon Beach, New River, and Floras Lake. Our objectives for the Oregon coastal population in 2011 were to: 1) estimate the size of the adult Snowy Plover population, 2) locate plover nests, 3) continue use of mini-exclosures (MEs) to protect nests from …