Physical Sciences and Mathematics Commons^™

Statistical Analysis And Modeling Of Brain Tumor Data: Histology And Regional Effects, Keshav Prasad Pokhrel

USF Tampa Graduate Theses and Dissertations

Comprehensive statistical models for non-normally distributed cancerous tumor sizes are

of prime importance in epidemiological studies, whereas a long term forecasting models

can facilitate in reducing complications and uncertainties of medical progress. The statistical

forecasting models are critical for a better understanding of the disease and supply

appropriate treatments. In addition such a model can be used for the allocations of budgets,

planning, control and evaluations of ongoing efforts of prevention and early detection of

the diseases.

In the present study, we investigate the effects of age, demography, and race on primary

brain tumor sizes using quantile regression methods to …

Cultivating Local: Building A Local Food System In Western North Carolina, Allison S. Perrett

USF Tampa Graduate Theses and Dissertations

This dissertation examines a movement in Western North Carolina to build a local food system, one grounded in the conditions and relationships of place. In 2000, Mountain Family Farms launched the Local Food Campaign to raise public awareness about the region's farms and farming heritage, to educate consumers about the benefits of buying food grown by local farms, and, ultimately, to build markets for locally grown food to sustain the region's farms. The campaign sparked a social movement and over a decade later local farms and locally grown food are a palpable feature of life in the mountains of Western …

Insight Into The Use, Perception, And Value Surrounding Domestic Water In Peru: Envisioning Demand Management In An Intermittent, Small-City, Service Context, Merril Augusta Putnam

USF Tampa Graduate Theses and Dissertations

Population growth, urbanization, degrading water quality, and climate change are making management of scarce water resources an increasingly difficult task for the domestic sector. It is recognized that in order to manage urban water resources demand management is requisite. Demand management has been experimented with in large cities of developing countries but continued focus on expanding supply overshadows its potential benefits and ultimate success. In order to manage demand, it must be measured and understood. Intermittent water services are prevalent in developing countries, but unmetered domestic water use under such conditions has not been carefully studied. This study conducted 1,149 …

Short And Long Term Volcano Instability Studies At Concepción Volcano, Nicaragua, Jose Armando Saballos

USF Tampa Graduate Theses and Dissertations

Concepción is the most active composite volcano in Nicaragua, and is located on Ometepe Island, within Lake Nicaragua. Moderate to small volcanic explosions with a volcanic explosivity index (VEI) of 1-2 have been characteristic of this volcano during the last four decades. Although its current activity is not violent, its volcanic deposits reveal stages of violent activity involving Plinian and sub-Plinian eruptions that deposited vast amounts of volcanic tephra in the Atlantic Ocean. These observations, together with the 31,000 people living on the island, make Concepción volcano an important target for volcanological research.

My research focuses on the investigation of …

Harmful Algal Blooms Of The West Florida Shelf And Campeche Bank: Visualization And Quantification Using Remote Sensing Methods, Inia Mariel Soto Ramos

USF Tampa Graduate Theses and Dissertations

Harmful Algal Blooms (HABs) in the Gulf of Mexico (GOM) are natural phenomena that can have negative impacts on marine ecosystems on which human health and the economy of some Gulf States depends. Many of the HABs in the GOM are dominated by the toxic dinoflagellate Karenia brevis. Non-toxic phytoplankton taxa such as Scrippsiella sp. also form intense blooms off the Mexican coast that result in massive fish mortality and economic losses, particularly as they may lead to anoxia.

The main objectives of this dissertation were to (1) evaluate and improve the techniques developed for detection of Karenia spp. blooms …

Time Scale Of Groundwater Recharge: A Generalized Modeling Technique, Makhan Virdi

USF Tampa Graduate Theses and Dissertations

Estimating the quantity of water that reaches the water table following an infiltration event is vital for modeling and management of water resources. Estimating the time scale of groundwater recharge after a rainfall event is difficult because of the dependence on nonlinear soil characteristics and variability in antecedent conditions. Modeling the flow of water through the variably saturated zone is computationally intensive since it requires simulation of Richards' equation, a nonlinear partial differential equation without a closed-form analytical solution, with parametric relationships that are difficult to approximate. Hence, regional scale coupled (surface water - groundwater) hydrological models make simplistic assumptions …

Anti-Parasitic And Anti-Bacterial Agents: Studies On 1,4-Dihydropyridines And 2,4-Diaminoquinazolines, Kurt Steven Van Horn

USF Tampa Graduate Theses and Dissertations

Thirty-three 1,4-dihydropyridine diastereomeric pairs were synthesized and the structure-activity relationship studied in a Plasmodium falciparum in vitro model. Twenty-nine of these derivatives contained a 6-position oxygen, with 2.31, 2.32, 2.52 and 2.53 having single and double digit nanomolar activities. This SAR study revealed some insightful information about the 1,4-dihydropyridine substitution pattern. Substitution at the 7-position other than 3,4-dimethoxy severely reduced the activity. 4-phenyl substitution with 2- or 4- halo or methyl formed active compounds while substitution at the 3-position or with methoxy or conjugated aryl systems resulted in inactive compounds. The 2-position was found to majorly affect the activity, with …

Statistical Analysis And Modeling Of Prostate Cancer, Yiu Ming Chan

USF Tampa Graduate Theses and Dissertations

The objective of the present study is to address some important questions related to prostate cancer treatments and survivorship among White and African American men. It is commonly understood that the risk of developing prostate cancer is higher in African American men than the other races. However, using parametric analysis, this study demonstrates that this perception is a "myth" not a "reality". The study further identifies the existence of racial/ethnic disparities by comparing the average mean tumor size, the median of survival time, and the survival function between White and African American men. These results underline the necessity of understanding …

Optimization, Modification And Application Of Gold Nanoparticles As The Substrates Of Surface Enhanced Raman Spectroscopy, Seongmin Hong

USF Tampa Graduate Theses and Dissertations

SERS

A Monte Carlo Approach To Change Point Detection In A Liver Transplant, Alexia Melissa Makris

USF Tampa Graduate Theses and Dissertations

Patient survival post liver transplant (LT) is important to both the patient and the center's accreditation, but over the years physicians have noticed that distant patients struggle with post LT care. I hypothesized that patient's distance from the transplant center had a detrimental effect on post LT survival. I suspected Hepatitis C (HCV) and Hepatocellular Carcinoma (HCC) patients would deteriorate due to their recurrent disease and there is a need for close monitoring post LT. From the current literature it was not clear if patients' distance from a transplant center affects outcomes post LT. Firozvi et al. (Firozvi AA, 2008) …

Modeling Potential Chemical Environments: Implications For Astrobiology, Brian Craig Szenay

USF Tampa Graduate Theses and Dissertations

Modeling chemical environments is an important step to understanding the diversity of prebiotic systems that may have formed on the early earth or potentially can occur on other worlds. By using the modern Earth as a test case, these models predict scenarios with systems more conducive to the formation of the organic molecules that are important to life. Here we use the equilibrium thermodynamic modeling program HSC Chem to investigate prebiotic environments. This program uses the raw material that the user inputs into the system in order to calculate the change in amounts of chemical species forming as a function …

Synthesis Of Amphiphilic Α- And Γ-Aapeptides For Antimicrobial, Self-Assembly, And Mineralization Studies, Mohamad N. Amin

USF Tampa Graduate Theses and Dissertations

Seven novel, amphiphilic AApeptides were prepared. Two cationic, lipo-α-AApeptides, NA-75 and NA-77 were found to possess potent antimicrobial activity against Gram-positive bacteria, with almost no hemolytic activity. In addition to NA-75 and 77, four amphiphilic, γ-AApeptides, NA-133, 135, 137, and 139, and one anionic lipo-α-AApeptide, NA-81, were prepared for molecular self-assembly studies, with several interesting nanostructures observed by TEM. Mineralization of calcium carbonate from gaseous CO2 and Ca2+ in the presence of the 7 AApeptide amphiphiles was also observed by optical microscopy. Several AApeptides were found to be able to influence CaCO3 crystal morphology. Another α-AApeptide, NA-63, was synthesized by …

Investigation Of Colored Dissolved Organic Matter (Cdom) Optical Properties, Nutrients, And Salinity In Coastal Florida: Springshed To Estuaries, Ana Rosa Arellano

USF Tampa Graduate Theses and Dissertations

Optical parameters measured via absorption spectroscopy and high-resolution fluorescence spectroscopy were used to characterize dissolved organic matter (DOM) in the springshed of Kings Bay, a spring-fed estuary located on Florida's Springs Coast. Over the past 40 years, springs supplying groundwater to Kings Bay have shown an increase in nitrate concentration. The overall goal of this project was to fingerprint wells and spring sites with elevated nitrogen concentrations using CDOM optical properties and establish relationships between nutrient and optical parameters. Samples were obtained from various sites: springs, Kings Bay surface (KBS), wells, coastal waters in and at the mouth of Crystal …

Development Of Nanostructured Graphene/Conducting Polymer Composite Materials For Supercapacitor Applications, Punya A. Basnayaka

USF Tampa Graduate Theses and Dissertations

The developments in mobile/portable electronics and alternative energy vehicles prompted engineers and researchers to develop electrochemical energy storage devices called supercapacitors, as the third generation type capacitors. Most of the research and development on supercapacitors focus on electrode materials, electrolytes and hybridization. Some attempts have been directed towards increasing the energy density by employing electroactive materials, such as metal oxides and conducting polymers (CPs). However, the high cost and toxicity of applicable metal oxides and poor long term stability of CPs paved the way to alternative electrode materials. The electroactive materials with carbon particles in composites have been used substantially …

Morphological Changes Associated With Tropical Storm Debby In The Vicinity Of Two Tidal Inlets, John's Pass And Blind Pass, West-Central Florida, Andrew Brownell

USF Tampa Graduate Theses and Dissertations

Tropical Storm Debby affected the Gulf coast of Florida in late June, 2012. The storm's southerly approach temporarily reversed the annual net southward longshore sediment transport. The energetic conditions associated with Tropical Storm Debby can be seen in the wind, wave and tidal measurements taken from both onshore and offshore weather stations around the dual tidal inlets system of John's Pass and Blind Pass, approximately 25 kilometers north of the mouth of Tampa Bay. The energetic and persistent southerly forcing, in addition to higher storm induced water levels and wave heights, resulted in atypical beach erosion and sediment deposition on …

Application And Characterization Of Self-Assembled Monolayers In Hybrid Electronic Systems, Michael Enoch Celesin

USF Tampa Graduate Theses and Dissertations

In this study, we explore ultra-thin insulators of organic and inorganic composition and their potential role as high-speed rectifiers. Typical applications for these structures include IR sensing, chemical detection, high speed logic circuits, and MEMS enhancements. While there are many elements in the functional group required to create a rectifying antenna (rectenna), the primary thrust of this work is on the rectifier element itself.

To achieve these research goals, a very good understanding of quantum tunneling was required to model the underlying phenomenon of charge conduction. The development of a multi-variable optimization routine for tunneling prediction was required. MATLAB was …

Magnetization Dynamics And Related Phenomena In Nanostructures, Sayan Chandra

USF Tampa Graduate Theses and Dissertations

Collective magnetic behavior in nanostructures is a phenomenon commonly observed in various magnetic systems. It arises due to competing inter/intra–particle interactions and size distribution and can manifest in phenomena like magnetic freezing, magnetic aging, and exchange bias (EB) effect. In order to probe these rather complex phenomena, conventional DC and AC magnetic measurements have been performed along with radio–frequency transverse susceptibility (TS) measurements. We also demonstrate the magnetic entropy change as a parameter sensitive to subtle changes in the magnetization dynamics of nanostructures. The focus of this dissertation is to study the collective magnetic behavior in core-shell nanostructures of Fe/γ–Fe …

Distinguishing Processes That Induce Temporal Beach Profile Changes Using Principal Component Analysis: A Case Study At Long Key, West-Central Florida, Denise Marie Davis

USF Tampa Graduate Theses and Dissertations

The heavily developed Long Key is located in Pinellas County in west-central Florida. The structured Blind Pass at the north end of the barrier island interrupts the southward longshore sediment transport, resulting in severe and chronic beach erosion along the northern portion of the island. Frequent beach nourishments were conducted to mitigate the erosion. In this study, the performance of the most recent beach nourishment in 2010 is quantified through time-series beach profile surveys. Over the 34-month period, the nourished northern portion of the island, Upham Beach, lost up to 330 m3/m of sand, with a landward shoreline retreat of …

Metabolism In Corals From Antarctica, The Deep-Sea, And The Shallow Subtropics: Contrasts In Temperature, Depth, And Light, Lara Henry

USF Tampa Graduate Theses and Dissertations

Coral habitats span the range from tropical to polar, extremely shallow to thousands of meters deep. The differences in light and temperature experienced in these varied habitats likely affect the metabolic rates of the corals residing there. The metabolism of three coral species from different habitats have been examined to elucidate the effects of these environmental parameters on metabolism, an under-studied aspect of coral biology. For all three species, measurements of oxygen uptake, ammonium excretion, and activity of the enzymes lactate dehydrogenase (LDH), malate dehydrogenase (MDH), and citrate synthase (CS) were used to characterize their metabolism. Off Florida's Gulf coast, …

Human Intention Recognition Based Assisted Telerobotic Grasping Of Objects In An Unstructured Environment, Karan Hariharan Khokar

USF Tampa Graduate Theses and Dissertations

In this dissertation work, a methodology is proposed to enable a robot to identify an object to be grasped and its intended grasp configuration while a human is teleoperating a robot towards the desired object. Based on the detected object and grasp configuration, the human is assisted in the teleoperation task. The environment is unstructured and consists of a number of objects, each with various possible grasp configurations. The identification of the object and the grasp configuration is carried out in real time, by recognizing the intention of the human motion. Simultaneously, the human user is assisted to preshape over …

Understanding Transport Variability Of The Antarctic Circumpolar Current Using Ocean Bottom Pressure, Jessica Makowski

USF Tampa Graduate Theses and Dissertations

Previous studies have suggested that ocean bottom pressure (OBP) can be used to measure the transport variability of the Antarctic Circumpolar Current (ACC). The OBP observations from the Gravity Recovery and Climate Experiment (GRACE) are used to calculate transport along the choke point between Antarctica and Australia. Statistical analysis will be conducted to determine the uncertainty of the GRACE observations using a simulated data set.

There has been some evidence to suggest that Southern Hemisphere winds and the Southern Annular Mode (SAM) or the Antarctic Oscillation (AAO) play a significant role in accelerating/decelerating ACC transport, along with some contribution from …

Hypogene Speleogenesis In The Cerna River Basin, Sw Romania: A Sedimentological, Mineralogical, And Stable Isotopic Approach, Cristina Montana Puscas

USF Tampa Graduate Theses and Dissertations

Ever since it was identified as a speleogenetic process in the Guadalupe Mountains of New Mexico, USA, hypogene speleogenesis has become the focus of numerous research projects aimed at discerning between classical epigene caves and sulfuric acid or thermal caves. The first distinguishing characteristics that were recognized for hypogene caves were passage and cave morphology. The following step was the identification of rare minerals, specific for processes associated to hypogene speleogenesis. One other important step was the recognition of the importance of stable isotopes - mainly of S - in tracing the source of S and the chemical processes affecting …

Unusual Patterns Of Seismicity During Eruptive And Non-Eruptive Periods At The Persistently Restless Telica Volcano, Nicaragua, Melanie Rodgers

USF Tampa Graduate Theses and Dissertations

Telica Volcano, Nicaragua, is a persistently restless volcano with high rates of seismicity that can vary from less than ten events to over a thousand events per day. Low-frequency (LF) events dominate the seismic catalogue and seismicity rates at Telica show little clear correlation with periods of eruption. As such, traditional methods of forecasting of volcanic activity based on increases in seismicity and recognition of LF activity are not applicable. A single seismic station has been operating at Telica since 1993, and in 2010 we installed a broadband seismic and continuous GPS network (TESAND network) at Telica. In this study …

Relative Survival Of Gags Mycteroperca Microlepis Released Within A Recreational Hook-And-Line Fishery: Application Of The Cox Regression Model To Control For Heterogeneity In A Large-Scale Mark-Recapture Study, Beverly J. Sauls

USF Tampa Graduate Theses and Dissertations

The objectives of this study were to measure injuries and impairments directly observed from gags Mycteroperca microlepis caught and released within a large-scale recreational fishery, develop methods that may be used to rapidly assess the condition of reef fish discards, and estimate the total portion of discards in the fishery that suffer latent mortality. Fishery observers were placed on for-hire charter and headboat vessels operating in the Gulf of Mexico from June 2009 through December 2012 to directly observe reef fishes as they were caught by recreational anglers fishing with hook-and-line gear. Fish that were not retained by anglers were …

Fate Of Polybrominated Diphenyl Ethers During Wastewater Treatment Process Producing Reclaimed Water, Kristy Siegel

USF Tampa Graduate Theses and Dissertations

Polybrominated diphenyl ethers (PBDEs), flame retardants, have been applied to consumer goods, such as furniture, electrical devices, textiles, and appliances for decades. Due to their physico-chemical properties, PBDEs are semi-volatile and easily leach off the consumer good during aging, stress, or normal wear and tear of the good. Once airborne, they pose an environmental health threat because they can adsorb onto dust particles, soil, or other particulates that can be inhaled, ingested, or come into contact with the dermal layer. Additionally, PBDEs have a molecular structure similar to other persistent organic pollutants, such as polychlorinated biphenyls and polychlorinated dibenzo-p-dioxins and …

Chlorophyll Fluorescence And Thermal Stress In Archaias Angulatus (Class Foraminifera), Heidi M. Toomey

USF Tampa Graduate Theses and Dissertations

ABSTRACT

Benthic foraminifers that host algal symbionts are similar to corals in that they rely on their algal endosymbionts for their energy needs, calcify prolifically, and are sensitive to changes in environmental conditions. They are abundant in the benthos of coastal coral-reef areas and are found throughout the tropical and subtropical regions. Pulse Amplitude Modulated (PAM) chlorophyll fluorometry and chlorophyll a extraction techniques were used to quantify and compare the photosynthetic responses of the benthic foraminiferal, Archaias angulatus and their isolated endosymbionts, Chlamydomonas hedleyi, to short-term changes in temperature. Maximum quantum efficiency (F_v/F_m) and rapid …

Stable Isotopes And Trace Elements In Tooth Enamel Bioapatite: Effects Of Diagenesis And Pretreatment On Primary Paleoecological Information, Jessica Norman Wilson

USF Tampa Graduate Theses and Dissertations

The geochemical analysis of bioapatite in vertebrate skeletal tissues is an important tool used to obtain ecological information from fossil animals. An important consideration when conducting stable isotope and trace element analyses is obtaining biogenic information that has been unaffected by diagenetic processes.

A two-step pretreatment procedure is commonly used remove diagenetically altered material by removing organic material, via an oxidation reaction with H2O2 or NaOCl, and secondary carbonate, via dissolution in dilute acetic acid, from bioapatite. While much work has been done to determine the efficacy of the pretreatment process, little research has been conducted to determine the potential …

Improving Implementation Of A Regional In-Line Chlorinator In Rural Panama Through Development Of A Regionally Appropriate Field Guide, Benjamin A. Yoakum

USF Tampa Graduate Theses and Dissertations

Access to safe drinking water has a direct effect on improving human health and their quality of life. One country still struggling with providing access to safe drinking water to all of its population is Panama. Panama's largest indigenous group, the Ngöbe people, is disproportionately affected by lack of access to safe drinking water. One way Panama's Ministry of Health (MINSA) is attempting to increase access to safe drinking water to the Ngöbe people is by disinfecting the water already captured by rural gravity fed water systems constructed within in the Ngöbe-Bugle reservation. This is accomplished using an in-line chlorinator …

Topological Degree And Variational Inequality Theories For Pseudomonotone Perturbations Of Maximal Monotone Operators, Teffera Mekonnen Asfaw

USF Tampa Graduate Theses and Dissertations

Let X be a real reflexive locally uniformly convex

Banach space with locally uniformly convex dual space X^*

. Let G be a

bounded open subset of X. Let T:X⊃ D(T)⇒ 2X^*

be maximal

monotone and S: X ⇒ 2X^*

be bounded

pseudomonotone and such that 0 notin cl((T+S)(D(T)∩partG)). Chapter 1 gives general introduction and mathematical prerequisites. In

Chapter 2 we develop a homotopy invariance and uniqueness results for the degree theory constructed by Zhang and Chen for multivalued (S₊) perturbations of

maximal monotone operators. Chapter 3 is devoted to the construction of a new …

Synthesis And Investigations Of Type I And Ii Clathrates Of Group 14, Michael Blosser

USF Tampa Graduate Theses and Dissertations

Clathrates are a class of new materials that have an open-framework structure that allows guest atoms or molecules to be enclosed inside of their polyhedral framework. Varying the number, weight, and size of the guest species in a particular framework allows one to alter the physical properties of the clathrate. This relationship enables one to further the fundamental understanding of the physics and chemistry of the clathrate structure and use this knowledge to "tune" certain properties. This "tunability" of inorganic clathrates is of great interest as it allows one to optimize their physical properties; making them promising candidates for a …