Physical Sciences and Mathematics Commons^™

Impacts Of Upgrading Gcc On The Srtuner Compiler Autotuning Algorithm, Jonathan D. Butterfield

Theses and Dissertations

An often-overlooked research gap is the applicability of research over time. The impact of updating the GNU Compiler Collection version was investigated for the SRTuner compiler optimization research. Versions 7 through 14 were tested using documented flags and recommended flag dependencies. Quality controls measured and enforced consistency across test runs and benchmarks. The performance of SRTuner was compared to a random control while the impact of enforcing flag dependencies was evaluated. The most influential flags were investigated by turning them off in isolation, but results were mixed. It was determined that enforcing flag dependencies resulted in improved performance, but the …

Rapid Kinetic Fluorogenic Quantification Of Malondialdehyde In Ground Beef, Keshav Raj Bhandari

Theses and Dissertations

Presented herein is rapid kinetic fluorogenic method to quantify malondialdehyde (MDA) in ground beef, utilizing 2-thiobarbituric acid (TBA) as the fluorogenic probe. This assay significantly shortens the total analysis time, from sample preparation to data acquisition, to just six minutes presenting a major advancement over traditional methods that typically require two hours and multiple instruments. The assay’s robustness against matrix interferences was validated using sample volume variation and standard addition calibration methods. Additionally, the effects of ambient exposure to air, washing, and cooking on MDA content in raw ground beef were quantified. While both ambient exposure to air and cooking …

Toward A Unified Network Flow Framework: From Conservation Principles To Fluid Dynamics Models, Zonghan Zhang

Theses and Dissertations

Network flows govern a wide range of critical systems, from tangible infrastructures like transportation and power grids to replicable processes such as information spread and epidemics. While tangible flows obey conservation laws and physical constraints, replicable flows, like rumors or viruses, can grow, decay, or vanish unpredictably. Despite their increasing interaction in real-world settings, these flow types are typically modeled in isolation, using disconnected mathematical frameworks. This dissertation presents a unified modeling approach that bridges the gap between conserved and replicable flows by embedding principles from fluid dynamics into graph-based propagation models. I introduce physically informed extensions to classical models, …

Assessing Water Quality And Algae In Wetland Reserve Easements In The Alluvial Valleys Of Mississippi And Louisiana, Avery June Wissmueller

Theses and Dissertations

Wetlands in agricultural landscapes play a critical role in improving water quality by retaining and transforming nutrients and pollutants. In the Mississippi Alluvial Valley (MAV), widespread conversion of bottomland hardwood forests to row-crop agriculture has diminished this natural function. The Wetland Reserve Easement (WRE) program restores wetlands on marginal farmland to recover ecosystem services. In this study, I evaluated water quality and algal productivity in WREs compared to natural reference wetlands and crop sites. Restored wetlands showed improved water quality compared to crop sites and were often comparable to or intermediate between reference wetlands. Seasonal variation and hydrologic differences shaped …

Nuclear Transparency Of Photoproduced Rho-0 Mesons., Bhesha Raj Devkota

Theses and Dissertations

Photonuclear reactions using a real photon beam offer a unique opportunity to explore fundamental aspects of QCD within the nuclear medium. The experiment E12-19-003, conducted at Jefferson Lab’s Hall D in 2021, aimed to look for the transition from hadronic to partonic degrees of freedom and to explore the predicted QCD phenomenon known as color transparency in photons, mesons, and baryons. A key objective was to examine the transition of the photons from a resolved (hadronic fluctuation) configuration to a point-like electromagnetic probe. The experiment utilized liquid deuterium, helium, and carbon foils as target nuclei, which were probed by photon …

Using Quantum Annealing For Sampling And Pattern Generation In Generative Machine Learning And Catastrophic Forgetting Mitigation, Abdelmoula El Yazizi

Theses and Dissertations

The first goal of this dissertation was to understand the reasons for the absence in previous investigations of significant and consistent improvements in the trainability of Restricted Boltzmann Machines (RBM) when the Quantum Annealer (QA) was used for sampling from the RBM probability distribution. The second goal was to address the shortcomings of those previous investigations, explore possibilities of improving RBM training, and identify other machine learning applications that could benefit from sampling or from generating patterns by the QA. The first part of this dissertation focused on a Local-Valley (LV) centered approach to assessing the quality of sampling. QA-based …

Inductively Heated Platinum Electrodes, Jayamini Madumali Mudugamuwa Hewage

Theses and Dissertations

This dissertation presents the fabrication and application of a 150 micrometer platinum microelectrode for induction heating, with a copper coil generating the electromagnetic field and the heating process controlled using pulse width modulation technique (PWM) to regulate the duty cycle of a high-frequency signal. Electrochemical characterization, including resonance frequency determination, peak-to-peak potential optimization, and scan rate variation, is conducted using a 5 mM [Ru(NH3)6]2+/3+ solution in 0.1 M KNO3 to calibrate current variations with changing duty cycles, while the temperature increase (delta T) is estimated using the Seebeck coefficient of [Ru(NH3)6]2+/3+. The study further explores the application of induction heating …

Bayesian Alignment Prior To Connectionist Temporal Classification Loss, Lawry Sorenson

Theses and Dissertations

We propose revisions of Connectionist Temporal Classification (CTC) loss and forced alignment to support longer input sequences. CTC loss is normally used for training in speech and handwriting recognition tasks when the labels are not fully aligned with the data, while forced alignment is a downstream task that finds the optimal path for segmentation purposes. The current implementations consider all possible alignments between the input and label, which grows exponentially with the size of the input. We show that in cases when silence is removed and speaking rate is consistent, the true alignment is a mostly straight line across time …

Commutative Schur Rings Over Characteristic 2 Special Orthogonal Groups, Andrew Haviland

Theses and Dissertations

We study commutative Schur rings over the special orthogonal groups $\mathrm{SO}^{\pm}(n,2)$ that contain the class $\mathcal{C}$ of transvections. We show that the partition of $\mathcal{C}$ determined by a commutative Schur ring has either one or two parts. We classify all remaining partitions of $\mathcal{C}$ that could be determined by a commutative Schur ring.

Implementing Dataops: A Scalable Framework For Modern Data Warehousing, Dmytro Valiaiev

Theses and Dissertations

DataOps has been coined as a novel term that emerged as a synthesis of data management practices with software engineering concepts, such as DevOps and Agile, with the goal of improving data quality and governance in enterprises. The proliferation of scratch table use and transformation tools, such as dbt, has led to an exponential increase in the number of data models, which complicates standardization efforts and increases maintenance overhead. Although the market is saturated with various flavors of text-to-SQL engines that promote increased productivity and self-service use in organizations, there are limited tools available to optimize individual queries, enforce consistency, …

Toward Understanding Multi-Agent Decision Making In Complex Societies, Jonathan Skaggs

Theses and Dissertations

This dissertation investigates Multi Agent Decision Making (MADM) within Complex Societies (CS), systems of interdependent agents whose collective behaviors emerge from local interactions. Such emergent dynamics are nonlinear and difficult to predict, posing significant challenges towards understanding how individual decisions scale to societal outcomes. Existing approaches often fall short of capturing the combined attributes of CS, including asymmetry, decentralization, and adaptivity. To address this gap, we introduce new models and analyses of agent strategies that explain how cooperation and stability can arise in CS. Structured around three interrelated projects, this dissertation enhances our comprehension of MADM in CS. The research …

Collective Agency And Community Resilience Among Farmworkers In The Lower Rio Grande Valley, Angel Velazquez

Theses and Dissertations

This research assesses how farmworkers in the Lower Rio Grande Valley of Texas use everyday practices to build resilience and adapt to changes in their lives. I apply two interconnected theories, White’s (2017, 2019) framework of collective agency and community resilience and Castro and Sen’s (2022) framework of everyday adaptation actions, to study these practices. I conducted 19 semi-structured interviews with Latino farmworkers and professionals who work with local farmworker organizations in the Rio Grande Valley (RGV) of Texas. Interview transcripts were analyzed to determine if and how Latino farmworkers in the RGV can work towards community resilience and implement …

Determination Of An Effective Natural Boxelder Bug (Boisea Trivittata) Repellent, Reyna Chavez

Theses and Dissertations

This study investigates the use of ecofriendly repellant alternatives to pest management to control boxelder bugs (Boisea trivittata). This bug gathers by the thousands on warm surfaces of exterior suburban homes during early fall and late spring. I determined bug repellency to turmeric oil (Curcuma longa), catnip (Nepeta cataria), citronella (Cymbopogon nardus), and lavender (Lavandula angustifolia). The treatments consisted of essential oils containing 20% methanol. All treatments demonstrated repellency of Boxelder bugs. Citronella was the most effective and had the highest level of repellency range of 90-99%. Catnip was the least effective with a repellency range of 63-82%.

Clustering 24-Hour Ambulatory Blood Pressure Time Series With Dynamic Time Warping And Time Warp Edit Distance, John Knight

Theses and Dissertations

Ambulatory blood pressure monitoring (ABPM) captures dynamic circadian changes in blood pressure (BP) that are not reflected in static clinic readings. This study applied time-series clustering with two elastic distance measures—Dynamic Time Warping (DTW) and Time Warp Edit Distance (TWED)—to identify distinct phenotypes in 2,155 24-hour ABPM time series from participants in the Maracaibo Aging Study. DTW and TWED both yielded three clusters corresponding to non-dipping, moderate-dipping, and strong-dipping patterns. The non-dipping group showed elevated nighttime BP, associated with greater cardiovascular and cognitive risk, while the strong-dipping group was associated with higher education and younger age in baseline clinic measurements. …

A Picture Tells A Thousand Words—, But Ecg Signals Have More To Say, Ashley N. Gomez

Theses and Dissertations

With the increasing adoption of deep learning classification models in the medical domain, a critical challenge remains: achieving high predictive accuracy while maintaining clinical Inter-pretability. This study examines how model architecture, dataset origin, and the use of full versus subset data affect both classification performance and Interpretability in Electrocardiogram (ECG) signal analysis. ResNet18 is evaluated using an open-source ECG Image Dataset, thus a custom dataset derived from digitized ECG images. Post-hoc explainability methods, such as Integrated Gradients, are applied to determine which time steps have the most significant influence on model decisions. The findings demonstrate that model architecture and dataset …

Efficient Self-Supervised Representation Learning For Large-Scale Time Series Classification, Kevin Garcia

Theses and Dissertations

Recently, there has been a significant advancement in designing Self-Supervised Learning (SSL) frameworks for time series data to reduce the dependency on data labels. Among these works, hierarchical contrastive learning-based SSL frameworks, which learn representations by contrasting data embeddings at multiple resolutions, have gained considerable attention. Due to their ability to gather more information, they exhibit better generalization in various downstream tasks. However, when the time series data length is significant long, the computational cost is often significantly higher than that of other SSL frameworks. In this paper, to address this challenge, we propose an efficient way to train hierarchical …

Interpretable Alignment Of Textual Weather Reports With Local Sensor Time Series For Extreme Weather Event Visualization, Juan Luis Garza

Theses and Dissertations

This thesis presents an automated and interpretable pipeline that links natural-language weather narratives with local meteorological sensor time series. Using large language models, NOAA-style event reports are transformed into structured records capturing event type, timing, descriptive context, and uncertainty. Each extracted event is aligned with harmonized temperature, precipitation, and wind measurements from nearby weather stations, enabling systematic comparisons between narrative evidence and observed atmospheric conditions.

Across roughly fifty stations and more than two thousand events, the analyses show that discrepancies between narrative descriptions and sensor behavior arise primarily from spatial separation rather than from temporal offsets, sensor preprocessing artifacts, or …

Fractals, Reachability, And Computation In Models Of Dna Self-Assembly And Chemical Reaction Networks, Ryan Arlie Knobel

Theses and Dissertations

This thesis serves as the bridge between results compiled across varying models of tile self-assembly, molecular computation, and game complexity. As such, this thesis is broken into three chapters. In the first part, we show how to generate any Discrete Self-Similar Fractal (DSSF) with a feasible generator in the seeded Tile Assembly model, a model limited to single tile attachments and pairwise state transitions. In the next part, we study models of molecular computation, where we consider the problem of reachability in Chemical Reaction Networks and similar model extensions. The final part is a game-complexity analysis of Celtic! and k-ago, …

Seagrass Preference Among Pinfish In The Lower Laguna Madre, Nathaniel Garza

Theses and Dissertations

Pinfish (Lagodon rhomboides) is a common estuarine fish species found from Massachusetts to the Yucatan, Mexico. As juveniles, pinfish spend a significant portion of their life in coastal seagrasses which provide both shelter from predators and food. Along the Texas coast, there are three major species of seagrass- turtle grass (Thalassia testudinum), manatee grass (Syringodium filiforme) and shoal grass (Halodule wrightii) that differ in structural complexity. The goal of this study was to determine if pinfish associate more with one seagrass species than the others. A year-long field study was completed using twelve sample sites in the Lower Laguna Madre, …

Connections On Manifolds: A Modern Approach To Classical Differential Geometry, Jed Allen Wilshire

Theses and Dissertations

The purpose of this thesis is to connect modern differential geometry concepts to the classical differential geometry study of surfaces, specifically spheres. This thesis will cover the topics of Riemannian manifolds, tangent spaces, vectors, vector fields, the connection of Levi-Civita, the Christoffel symbols, and Riemannian curvature. Each concept will be demonstrated on the well known unit sphere manifold.

Population Structure Of Red Drum (Sciaenops Ocellatus (Linnaeus, 1766)) In Two Systems In The Northwestern Gulf Of Mexico, Sandra Antonia Leal

Theses and Dissertations

Red drum (Sciaenops ocellatus) are an economically significant species of fish inhabiting the Gulf of Mexico. There are limited studies assessing S. ocellatus population structure focused on the southern coast of Texas. A total of 1,008 fish were collected over one year on a quarterly basis at South Bay (SB) and Holly Beach (HB) in the Lower Laguna Madre (LLM) of Texas to assess population structure. Juvenile S. ocellatus utilize the water systems of the LLM as a nursery ground and were more abundant at SB (n = 718) than HB (n = 290). The most abundant age classes were …

A Computational Approach To Ramanujan-Type Congruences For Products Of Level 13, Aiden Michael Lalonde

Theses and Dissertations

In this thesis, we find products that are modular forms of level 13 whose Fourier coefficients satisfy certain congruences. These products are constructed in terms of integer powers of Klein forms and the Dedekind eta function. The products that are modular forms for Γ1 (13) have vectors of exponents that are elements of a bounded polytope. A parameterization for this polytope allows us to find a complete set of products that are modular forms for Γ1 (13). The corresponding graded ring of modular forms containing these products is constructed from a finite set of generators. These generators satisfy a finite …

Long-Term Sedimentation Rates And Patterns Of Alluvial Ridge Basins (Esteros) Of The Rio Grande Delta (Tx, United States Of America), Kynan Joseph Rutan

Theses and Dissertations

Little is known about the century-scale sedimentation rates and patterns of Alluvial Ridge basins within river deltas, especially in the Rio Grande Delta (RGD). To better constrain this, 22 cores were collected in the Bahia Grande Complex (BGC) and analyzed for grain size, organic content, age dates, and elemental composition.

Results show that grain size and sedimentation rates decrease from an artificial inlet to the basin interior, with elevated sedimentation in the south. Also, human activities, such as the construction of the Brownsville shipping channel in the 1930s, altered sedimentation dynamics in the basin by blocking natural inlets and leading …

Quantum Entanglement As A Resource For Coordinating Navigation, Aamir Ahmad

Theses and Dissertations

John Clauser, Michael Horne, Abner Shimony, and Richard Holt (CHSH) originally formulated the CHSH game as an experiment to establish entanglement as a quantum mechanical phenomenon that could not be predicted by classical theories. I will apply the quantum strategy used in the CHSH game to demonstrate that it also establishes a structure that employs entanglement as a resource to enable coordination without communication in the context of navigation.

Benthic Infaunal Responses To Shoreline Restoration, Jessica Lauren Cline

Theses and Dissertations

In the age of increasing urban coastal sprawl, natural shorelines are being replaced by hard armoring structures, which result in the loss of valuable ecosystem services. Hybrid living shorelines, areas that include limited and less intensive armoring strategies paired with the integration of plants and other natural materials, present an opportunity to marry the need for more aggressive stabilization with the continued preservation of ecosystem functions and biological communities. This project uses benthic infauna to evaluate the success of a living shoreline installation in Palm Bay, Florida. The deployment features experimental treatments of breakwaters and red mangroves to explore how …

Qualitative Stereo Vision Using Distributed Extended Waltz Filtering, Ben Mathew

Theses and Dissertations

Stereo vision is a fundamental problem in computer vision, aimed at reconstructing three-dimensional scene structure from two or more two-dimensional images. Traditional stereo algorithms rely on quantitative disparity estimation, often constrained by calibration precision, lighting variations, and surface texture. In contrast, our proposed Qualitative Stereo Vision seeks to understand depth relationships and spatial configurations from multiple planar views through symbolic reasoning and constraint satisfaction, offering a more flexible and cognitively plausible approach to scene interpretation.

This dissertation presents a novel framework called Distributed Extended Waltz Filtering, designed to provide qualitative stereo vision, particularly in the presence of occlusions—a persistent challenge …

Computational Expressions Of Void Reactions In Extended Chemical Reaction Network Models, Aiden J. Massie

Theses and Dissertations

Chemical Reaction Networks (CRNs) are a system of abstraction of real-world chemical dynamics. Each CRN system is defined as a pair of molecular species and reaction rules, which consume a set of reactant species and create a new set of product species. In this paper, we investigate the simple class of void reactions, which cannot create new species and are computationally weak with small-enough sizes in basic CRNs. Here, we study their computational expression in more powerful extended CRN models. Specifically, we consider the Step CRN model, in which new species are added into the system through a sequence of …

Interactive Effects Of Nutrient Loading And Hyposalinityon The Physiological Responses Of The Red Macroalga Gracilaria Tikvahiae, Donavuan Vincent Salazar

Theses and Dissertations

Coastal macroalgae face anthropogenic stressors such as nutrient enrichment from nitrogen fertilizers and reduced salinity linked to flooding. The physiological impacts of these combined stressors remain unclear. This study examined interactive effects of nitrogen loading and hyposalinity on Gracilaria tikvahiae through a 9‑day laboratory experiment. Samples experienced declining salinity (35–0 ppt) with nitrate or ammonia enrichment (120 µmol/L). Measurements included primary production, respiration, biomass, nitrate uptake, and chlorophyll‑a. Hyposalinity significantly reduced physiological performance, with gross primary production declining over 100%, chlorophyll‑a content 25–45% lower, biomass loss, and reduced nitrogen uptake. Nitrogen enrichment failed to mitigate the adverse impacts under hyposaline …

Modern Water And Sediment Transport Patterns In Alluvial Ridge Basins Of The Rio Grande Delta, South Texas, Usa, Waqid Nabi

Theses and Dissertations

Alluvial ridge (AR) basins are shallow, marine-influenced depressions within river deltas, yet their flow and sediment dynamics remain poorly understood. This study examines hydrodynamics and sediment transport patterns in the Bahia Grande Complex, which are AR basins of the Rio Grande Delta, using tilt current meters, water-level and turbidity loggers, and suspended and bed-sediment sampling. The AR basins function as wind-dominated, microtidal environments, where pre-existing basin geometry and hydrodynamic forcings control water flow and sediment distribution patterns. Seasonal wind patterns and storms modulate water levels and flow connectivity. Substrate patterns reflect frequent resuspension in the shallow northern basin, maintaining coarse …

Design And Evaluation Of Gamified Kahoot Modules For Improving Engagement And Conceptual Understanding Of Introductory Physics Students, Yaritza Villarreal

Theses and Dissertations

This study investigates the effectiveness of gamified learning modules in enhancing the engagement and conceptual understanding of introductory physics students. The first phase of this study focused on the design and development of gamified learning modules for selected topics in introductory physics. The modules were developed by integrating principles of Backward Design, following an escape-room theme with interactive scenarios, and incorporating classic game elements (e.g., points and leaderboards).

The second phase examined the effectiveness of the gamified Kahoot modules using a pretest-posttest control-group design. Sixty-eight (68) students were equally randomly assigned to the control and experimental groups. The experimental group …