Physical Sciences and Mathematics Commons^™

Dominance Of Diffusive Methane Emissions From Lowland Headwater Streams Promotes Oxidation And Isotopic Enrichment, Andrew L. Robison, Wilfred M. Wollheim, Clarice R. Perryman, Annie R. Cotter, Jessica E. Mackay, Ruth K. Varner, Paige Clarizia, Jessica G. Ernakovich

Faculty Publications

Inland waters are the largest natural source of methane (CH4) to the atmosphere, yet the contribution from small streams to this flux is not clearly defined. To fully understand CH4 emissions from streams and rivers, we must consider the relative importance of CH4 emission pathways, the prominence of microbially-mediated production and oxidation of CH4, and the isotopic signature of emitted CH4. Here, we construct a complete CH4 emission budgets for four lowland headwater streams by quantifying diffusive CH4 emissions and comparing them to previously published rates of ebullitive emissions. We also examine the isotopic composition of CH4 along with the …

A New Matroid Lift Construction And An Application To Group-Labeled Graphs, Zach Walsh

Faculty Publications

A well-known result of Brylawski constructs an elementary lift of a matroid M from a linear class of circuits of M. We generalize this result by constructing a rank-k lift of M from a rank-k matroid on the set of circuits of M. We conjecture that every lift of M arises via this construction. We then apply this result to group-labeled graphs, generalizing a construction of Zaslavsky. Given a graph G with edges labeled by a group, Zaslavsky's lift matroid K is an elementary lift of the graphic matroid M(G) that respects the group-labeling; specifically, the cycles of G that …

Reply To Comment: Controls On Turnover Of Marine Dissolved Organic Matter-Testing The Null Hypothesis Of Purely Concentration-Driven Uptake, Yuan Shen, Ronald Benner

Faculty Publications

Our recent bioassay experiments indicate that molecular properties are a primary control on the microbial utilization of dissolved organic matter in the ocean. This finding is questioned by Lennartz and Dittmar who modeled our experiments and concluded that our observations could be largely explained by concentration-driven uptake independent from molecular properties. We suggest the authors' models are deficient for establishing the relative roles of molecular properties and concentration-driven uptake. Our conclusion is consistent with earlier and recent experimental results and biogeochemical observations, supporting a unified theory with molecular properties as a more prominent control than concentration-driven uptake on marine organic …

A Comparison Of Sporadic-E Occurrence Rates Using Gps Radio Occultation And Ionosonde Measurements, Rodney Carmona, Omar A. Nava, Eugene V. Dao, Daniel J. Emmons

Faculty Publications

Sporadic-E (E_s) occurrence rates from Global Position Satellite radio occultation (GPS-RO) measurements have shown to vary by a factor of five between studies, motivating the need for a comparison with ground-based measurements. In an attempt to find accurate GPS-RO techniques for detecting E_s formation, occurrence rates derived using five previously developed GPS-RO techniques are compared to ionosonde measurements over an eight-year period from 2010–2017. GPS-RO measurements within 170 km of a ionosonde site are used to calculate E_s occurrence rates and compared to the ground-truth ionosonde measurements. The techniques are compared individually for each ionosonde site …

Dispersed Crude Oil Induces Dysbiosis In The Red Snapper Lutjanus Campechanus External Microbiota, Andrew M. Tarnecki, Christelle Miller, Tracy A. Sherwood, Robert J. Griffitt, Ryan W. Schloesser, Dana L. Wetzel

Faculty Publications

The fish external microbiota competitively excludes primary pathogens and prevents the proliferation of opportunists. A shift from healthy microbiota composition, known as dysbiosis, may be triggered by environmental stressors and increases host susceptibility to disease. The Deepwater Horizon (DWH) oil spill was a significant stressor event in the Gulf of Mexico. Despite anecdotal reports of skin lesions on fishes following the oil spill, little information is available on the impact of dispersed oil on the fish external microbiota. In this study, juvenile red snapper (Lutjanus campechanus) were exposed to a chemically enhanced water-accommodated fraction (CEWAF) of Corexit 9500/DWH …

Robust Error Estimation Based On Factor-Graph Models For Non-Line-Of-Sight Localization, O. Arda Vanli, Clark N. Taylor

Faculty Publications

This paper presents a method to estimate the covariances of the inputs in a factor-graph formulation for localization under non-line-of-sight conditions. A general solution based on covariance estimation and M-estimators in linear regression problems, is presented that is shown to give unbiased estimators of multiple variances and are robust against outliers. An iteratively re-weighted least squares algorithm is proposed to jointly compute the proposed variance estimators and the state estimates for the nonlinear factor graph optimization. The efficacy of the method is illustrated in a simulation study using a robot localization problem under various process and measurement models and measurement …

Connecting Ansatz Expressibility To Gradient Magnitudes And Barren Plateaus, Zoe Holmes, Kunal Sharma, M Cerezo, Patrick Coles

Faculty Publications

Parametrized quantum circuits serve as ansatze for solving variational problems and provide a flexible paradigm for the programming of near-term quantum computers. Ideally, such ansatze should be highly expressive, so that a close approximation of the desired solution can be accessed. On the other hand, the ansatz must also have sufficiently large gradients to allow for training. Here, we derive a fundamental relationship between these two essential properties: expressibility and trainability. This is done by extending the well-established barren plateau phenomenon, which holds for ansatze that form exact 2-designs, to arbitrary ansatze. Specifically, we calculate the variance in the cost …

Future Of Winter In Northeastern North America: Climate Indicators Portray Warming And Snow Loss That Will Impact Ecosystems And Communities, Elizabeth Burakowski, Alix Contosta, Danielle Grogan, Sarah Nelson, Sarah Garlick, Nora Casson

Faculty Publications

Winters in northeastern North America have warmed faster than summers, with impacts on ecosystems and society. Global climate models (GCMs) indicate that winters will continue to warm and lose snow in the future, but uncertainty remains regarding the magnitude of warming. Here, we project future trends in winter indicators under lower and higher climate-warming scenarios based on emission levels across northeastern North America at a fine spatial scale (1/16°) relevant to climate-related decision making. Under both climate scenarios, winters continue to warm with coincident increases in days above freezing, decreases in days with snow cover, and fewer nights below freezing. …

Search For Single Top-Quark Production Via Flavour-Changing Neutral Currents At 8 Tev With The Atlas Detector (Vol 76, 55, 2016), G. Aad, B. Abbott, J. Abdallah, O. Abdinov, R. Aben, M. Abolins, O.S. Abouzeid, H. Abramowicz, H. Abreu, R. Abreu, Y. Abulaiti, B.S. Acharya, L. Adamczyk, D.L. Adams, J. Adelman, S. Adomeit, T. Adye, A. A. Affolder, T. Agatonovic-Jovin, J. Agricola, Milind Purohit

Faculty Publications

No abstract provided.

Development Of Advanced Machine Learning Models For Analysis Of Plutonium Surrogate Optical Emission Spectra, Ashwin P. Rao, Phillip R. Jenkins, John D. Auxier Ii, Michael B. Shattan, Anil K. Patnaik

Faculty Publications

This work investigates and applies machine learning paradigms seldom seen in analytical spectroscopy for quantification of gallium in cerium matrices via processing of laser-plasma spectra. Ensemble regressions, support vector machine regressions, Gaussian kernel regressions, and artificial neural network techniques are trained and tested on cerium-gallium pellet spectra. A thorough hyperparameter optimization experiment is conducted initially to determine the best design features for each model. The optimized models are evaluated for sensitivity and precision using the limit of detection (LoD) and root mean-squared error of prediction (RMSEP) metrics, respectively. Gaussian kernel regression yields the superlative predictive model with an RMSEP of …

Search For Continuous Gravitational Waves From 20 Accreting Millisecond X-Ray Pulsars In O3 Ligo Data, R. Abbott, T. D. Abbott, F. Acernese, K. Ackley, C. Adams

Faculty Publications

Results are presented of searches for continuous gravitational waves from 20 accreting millisecond x-ray pulsars with accurately measured spin frequencies and orbital parameters, using data from the third observing run of the Advanced LIGO and Advanced Virgo detectors. The search algorithm uses a hidden Markov model, where the transition probabilities allow the frequency to wander according to an unbiased random walk, while the J-statistic maximum-likelihood matched filter tracks the binary orbital phase. Three narrow subbands are searched for each target, centered on harmonics of the measured spin frequency. The search yields 16 candidates, consistent with a false alarm probability of …

Crop Rotational Complexity Affects Plant-Soil Nitrogen Cycling During Water Deficit, Timothy M. Bowles, Andrea Jilling, Karen Moran-Rivera, Jorg Schnecker, A. Stuart Grandy

Faculty Publications

One of the biggest environmental challenges facing agriculture is how to both supply and retain nitrogen (N), especially as precipitation becomes more variable with climate change. We used a greenhouse experiment to assess how contrasting histories of crop rotational complexity affect plant-soil-microbe interactions that govern N processes, including during water stress. With higher levels of carbon and N cycling hydrolytic enzymes, higher mineral-associated organic matter N concentrations, and an altered microbial community, soils from the most complex rotation enabled 80% more corn N uptake under two moisture regimes, compared to soil from monoculture corn. Higher levels of plant N likely …

Scanner: A Web Platform For Annotation, Visualization And Sharing Of Single Cell Rna-Seq Data, Guoshuai Cai, Xuanxuan Yu, Choonhan Youn, Jun Zhou, Feifei Xiao

Faculty Publications

In recent years, efficient scRNA-seq methods have been developed, enabling the transcriptome profiling of single cells massively in parallel. Meanwhile, its high dimensionality and complexity bring challenges to the data analysis and require extensive collaborations between biologists and bioinformaticians and/or biostatisticians. The communication between these two units demands a platform for easy data sharing and exploration. Here we developed Single-Cell Transcriptomics Annotated Viewer (SCANNER), as a public web resource for the scientific community, for sharing and analyzing scRNA-seq data in a collaborative manner. It is easy-to-use without requiring special software or extensive coding skills. Moreover, it equipped a real-time database …

Search For Continuous Gravitational Waves From 20 Accreting Millisecond X-Ray Pulsars In O3 Ligo Data, Ligo Scientific Collaboration, Virgo Collaboration, Kagra Collaboration, Tiffany Z. Summerscales

Faculty Publications

Results are presented of searches for continuous gravitational waves from 20 accreting millisecond x-ray pulsars with accurately measured spin frequencies and orbital parameters, using data from the third observing run of the Advanced LIGO and Advanced Virgo detectors. The search algorithm uses a hidden Markov model, where the transition probabilities allow the frequency to wander according to an unbiased random walk, while the J-statistic maximum-likelihood matched filter tracks the binary orbital phase. Three narrow subbands are searched for each target, centered on harmonics of the measured spin frequency. The search yields 16 candidates, consistent with a false alarm probability of …

Coupling Between Alfvén Wave And Kelvin–Helmholtz Waves In The Low Latitude Boundary Layer, Eun-Hwa Kim, Jay R. Johnson

Faculty Publications

The Kelvin–Helmholtz (KH) instability of magnetohydrodynamic surface waves at the low latitude boundary layer is examined using both an eigenfrequency analysis and a time-dependent wave simulation. The analysis includes the effects of sheared flow and Alfvén velocity gradient. When the magnetosheath flows are perpendicular to the ambient magnetic field direction, unstable KH waves that propagate obliquely to the sheared flow direction occur at the sheared flow surface when the Alfvén Mach number is higher than an instability threshold. Including a shear transition layer between the magnetosphere and magnetosheath leads to secondary KH waves (driven by the sheared flow) that are …

Reef Sediments Can Act As A Stony Coral Tissue Loss Disease Vector, Michael S. Studivan, Ashley M. Rossin, Ewelina Rubin, Nash Soderberg, Daniel M. Holstein, Ian C. Enochs

Faculty Publications

Stony coral tissue loss disease (SCTLD) was first observed in 2014 near Virginia Key in Miami-Dade County, Florida. Field sampling, lab experiments, and modeling approaches have suggested that reef sediments may play a role in SCTLD transmission, though a positive link has not been tested experimentally. We conducted an ex situ transmission assay using a statistically-independent disease apparatus to test whether reef sediments can transmit SCTLD in the absence of direct contact between diseased and healthy coral tissue. We evaluated two methods of sediment inoculation: batch inoculation of sediments collected from southeast Florida using whole colonies of diseased Montastraea cavernosa, …

Electromagnetic Multi–Gaussian Speckle, Milo W. Hyde Iv, Olga Korotkova

Faculty Publications

Generalizing our prior work on scalar multi-Gaussian (MG) distributed optical fields, we introduce the two-dimensional instantaneous electric-field vector whose components are jointly MG distributed. We then derive the single-point Stokes parameter probability density functions (PDFs) of MG-distributed light having an arbitrary degree and state of polarization. We show, in particular, that the intensity contrast of such a field can be tuned to values smaller or larger than unity. We validate our analysis by generating an example partially polarized MG field with a specified single-point polarization matrix using two different Monte Carlo simulation methods. We then compute the joint PDFs of …

Towards A Quantum Notion Of Covariance In Spherically Symmetric Loop Quantum Gravity, Rodolfo Gambini, Javier Olmedo, Jorge Pullin

Faculty Publications

The covariance of loop quantum gravity studies of spherically symmetric space-times has recently been questioned. This is a reasonable worry, given that they are formulated in terms of slicing-dependent variables. We show explicitly that the resulting space-times, obtained from Dirac observables of the quantum theory, are covariant in the usual sense of the way-they preserve the quantum line element-for any gauge that is stationary (in the exterior, if there is a horizon). The construction depends crucially on the details of the Abelianized quantization considered, the satisfaction of the quantum constraints, and the recovery of standard general relativity in the classical …

Towards A Quantum Notion Of Covariance In Spherically Symmetric Loop Quantum Gravity, Rodolfo Gambini, Javier Olmedo, Jorge Pullin

Faculty Publications

The covariance of loop quantum gravity studies of spherically symmetric space-times has recently been questioned. This is a reasonable worry, given that they are formulated in terms of slicing-dependent variables. We show explicitly that the resulting space-times, obtained from Dirac observables of the quantum theory, are covariant in the usual sense of the way-they preserve the quantum line element-for any gauge that is stationary (in the exterior, if there is a horizon). The construction depends crucially on the details of the Abelianized quantization considered, the satisfaction of the quantum constraints, and the recovery of standard general relativity in the classical …

Self-Relabeling For Noise-Tolerant Retina Vessel Segmentation Through Label Reliability Estimation, Jiacheng Li, Ruirui Li, Ruize Han, Song Wang

Faculty Publications

Background Retinal vessel segmentation benefits significantly from deep learning. Its performance relies on sufficient training images with accurate ground-truth segmentation, which are usually manually annotated in the form of binary pixel-wise label maps. Manually annotated ground-truth label maps, more or less, contain errors for part of the pixels. Due to the thin structure of retina vessels, such errors are more frequent and serious in manual annotations, which negatively affect deep learning performance.

Methods In this paper, we develop a new method to automatically and iteratively identify and correct such noisy segmentation labels in the process of network training. We consider …

Search For Darkonium In E+ E− Collisions, J. P. Lees, V. Poireau, V. Tisserand, E. Grauges, A. Palano, G. Eigen, D. N. Brown, Yu. G. Kolomensky, M. Fritsch, H. Koch, T. Schroeder, R. Cheaib, C. Hearty, T. S. Mattison, J. A. Mckenna, R. Y. So, V. E. Blinov, A. R. Buzykaev, Milind Purohit, Et. Al.

Faculty Publications

Collider searches for dark sectors, new particles interacting only feebly with ordinary matter, have largely focused on identifying signatures of new mediators, leaving much of dark sector structures unexplored. In particular, the existence of dark matter bound states (darkonia) remains to be investigated. This possibility could arise in a simple model in which a dark photon (A') is light enough to generate an attractive force between dark fermions. We report herein a search for a JPC ¼ 1−− darkonium state, the ϒ_D, produced in the reaction e⁺e⁻ → γϒ_D, ϒ_D → A …

Measurements Of The Electron-Helicity Asymmetry In The Quasi-Elastic A ((E) Over Right Arrow, E' O) Process, T. Kolar, S. J. Paul, P. Achenbach, H. Arenhoevel, A. Ashkenazi, J. Beričič, R. Böhm, D. Bosnar, T. Brecelj, E. Cline, E. O. Cohen, M. O. Distler, A. Esser, I. Friščić, R. Gilman, C. Giusti, M. Heilig, M. Hoek, D, Izraeli, Steffen Strauch, Et. Al.

Faculty Publications

We present measurements of the electron helicity asymmetry in quasi-elastic proton knockout from ²H and ¹²C nuclei by polarized electrons. This asymmetry depends on the fifth structure function, is antisymmetric with respect to the scattering plane, and vanishes in the absence of final-state interactions, and thus it provides a sensitive tool for their study. Our kinematics cover the full range in off-coplanarity angle θ_pq, with a polar angle θ_pq coverage up to about 8^◦. The missing energy resolution enabled us to determine the asymmetries for knock-out resulting in different states of the residual …

The Isocaloric Substitution Of Plant-Based And Animal-Based Protein In Relation To Aging-Related Health Outcomes: A Systematic Review, Jiali Zheng, Tianren Zhu, Guanghuan Yang, Longgang Zhao, Fangyu Li, Yong-Moon Park, Fred K. Tabung, Susan E. Steck Phd, Mph, Rd, Xiaoguang Li, Hui Wang

Faculty Publications

Plant-based and animal-based protein intake have differential effects on various aging-related health outcomes, but less is known about the health effect of isocaloric substitution of plant-based and animal-based protein. This systematic review summarized current evidence of the isocaloric substitutional effect of plant-based and animal-based protein on aging-related health outcomes. PubMed and Embase databases were searched for epidemiologic observational studies published in English up to 15 March 2021. Studies that included adults ≥18 years old; use of a nutritional substitution model to define isocaloric substitution of plant protein and animal protein; health outcomes covering mortality, aging-related diseases or indices; and reported …

Characterization Of Ti/Sno2 Interface By X-Ray Photoelectron Spectroscopy, Miranda Martinez, Chourasia R. Anil

Faculty Publications

The Ti/SnO2 interface has been investigated in situ via the technique of x-ray photoelectron spectroscopy. Thin films (in the range from 0.3 to 1.1 nm) of titanium were deposited on SnO2 substrates via the e-beam technique. The deposition was carried out at two different substrate temperatures, namely room temperature and 200 C. The photoelectron spectra of tin and titanium in the samples were found to exhibit significant differences upon comparison with the corresponding elemental and the oxide spectra. These changes result from chemical interaction between SnO2 and the titanium overlayer at the interface. The SnO2 was observed to be reduced …

Design, Construction And Operation Of The Protodune-Sp Liquid Argon Tpc, The Dune Collaboration, A. Abed Abud, B. Abi, R. Acciarri, M. A. Acero, M. R. Adames, G. Adamov, D. Adams, M. Adinolfi, A. Aduszkiewicz, J. Aguilar, Z. Ahmad, J. Ahmed, B. Ali-Mohammadzadeh, T. Alion, K. Allison, S. Alonso Monsalve, M. Alrashed, C. Alt, A. Alton, Roberto Petti, Et. Al.

Faculty Publications

The ProtoDUNE-SP detector is a single-phase liquid argon time projection chamber (LArTPC) that was constructed and operated in the CERN North Area at the end of the H4 beamline. This detector is a prototype for the first far detector module of the Deep Underground Neutrino Experiment (DUNE), which will be constructed at the Sandford Underground Research Facility (SURF) in Lead, South Dakota, U.S.A. The ProtoDUNE-SP detector incorporates full-size components as designed for DUNE and has an active volume of 7 × 6 × 7.2 m³. The H4 beam delivers incident particles with well-measured momenta and high-purity particle identification. …

Investigation Of Metastable Low Dimensional Halometallates, Navindra Keerthisinghe, Matthew S. Christian, Anna A. Berseneva, Gregory Morrison, Vladislav V. Klepov, Mark D. Smith, Hans Conrad Zur Loye

Faculty Publications

The solvothermal synthesis, structure determination and optical characterization of five new metastable halometallate compounds, [1,10-phenH][Pb_3.5I₈] (1), [1,10-phenH₂][Pb₅I₁₂]·(H₂O) (2), [1,10-phen][Pb₂I₄] (3), [1,10-phen]₂[Pb₅Br₁₀] (4) and [1,10-phenH][SbI₄]·(H₂O) (5), are reported. The materials exhibit rich structural diversity and exhibit structural dimensionalities that include 1D chains, 2D sheets and 3D frameworks. The optical spectra of these materials are consistent with bandgaps ranging from 2.70 to 3.44 eV. We show …

From Balancing Redox Reactions To Determining Change Of Oxidation Numbers, Pong Kau Yuen, Cheng Man Diana Lau

Faculty Publications

Redox reaction is a core concept in teaching and learning chemistry. This article explores a new method for balancing organic redox reactions that requires the balancing of both atoms and charges. The H+, O, H2O, and e– are used as balanced vehicles in two half reactions. A non-oxidation number approach can be applied to both molecular and ionic equations. The article also provides standard operating procedures and examples. The number of transferred electrons is first determined by balancing a half redox reaction; consequently; the change of oxidation numbers can be calculated. The mathematical equation of Te– = n Te– = …

Testing Effects Of Lorentz Invariance Violation In The Propagation Of Astroparticles With The Pierre Auger Observatory, P. Abreu, M. Aglietta, J. M. Albury, I. Allekotte, K. Almeida Cheminant

Faculty Publications

Lorentz invariance violation (LIV) is often described by dispersion relations of the form E-i(2) = m(i)(2) + p(i)(2) + delta E-i,n(2+ n) with delta different based on particle type i, with energy E, momentum p and rest mass m. Kinematics and energy thresholds of interactions are modified once the LIV terms become comparable to the squared masses of the particles involved. Thus, the strongest constraints on the LIV coefficients delta(i,n) tend to come from the highest energies. At sufficiently high energies, photons produced by cosmic ray interactions as they propagate through the Universe could be subluminal and unattenuated over cosmological …

Testing Xrf Identification Of Marine Washover Sediment Beds In A Coastal Lake In Southeastern Texas, Usa, Harry F. L. Williams, Chelsea E. Beaubouef, Kam-Biu Liu, Nicholas Culligan, Lance Riedlinger

Faculty Publications

This study tests the ability of a novel approach to identifying washover beds in coastal lakes. Combined X-Ray Fluorescence (XRF) and cluster analysis was used to identify hurricane washover beds in sediment cores from Clam Lake on the McFaddin National Wildlife Refuge in southeastern Texas. The lake is known to contain washover beds from recent hurricanes, but the washover sediment has similar microfossil, loss-on-ignition and textural characteristics to non-washover sediment and is not readily distinguishable. Sediment cores taken from marshes surrounding the lake do contain visually-recognizable sandy washover beds of Hurricanes Ike, Rita, Carla and Audrey. XRF analysis of these …

Mid-Breton Sediment Diversion (Mbrsd) Assessment – Final Report, Jerry D. Wiggert, Brandy N. Armstrong, M. Kemal Cambazoglu, Sandeep Kalathupurath Kuttan

Faculty Publications

The purpose of this project is to provide managers at the Mississippi Department of Marine Resources (MDMR) with the scientific information needed to accurately address public concerns regarding the potential effects of the Louisiana Coastal Master Plan / Coastal Protection and Restoration Authority (CPRA) Mid-Breton Sediment Diversion (MBrSD) on the jurisdictional waters and resources of Mississippi. The stated design purpose of the MBrSD is to reconnect and re-establish the deltaic sediment deposition process between the Mississippi River and the Breton Sound Basin through a diversion that will deliver up to 75,000 cfs of sediment-laden freshwater. The report presented herein provides …