Physical Sciences and Mathematics Commons^™

Simulating Strongly Coupled Many-Body Systems With Quantum Algorithms, Manqoba Qedindaba Hlatshwayo

Dissertations

The complexity of the nuclear many-body problem is a severe obstacle to finding a general and accurate numerical approach needed to simulate medium-mass and heavy nuclei. Even with the advent of exascale classical computing, the impediment of exponential growth of the Hilbert space renders the problem intractable for most classical calculations. In the last few years, quantum algorithms have become an attractive alternative for practitioners because quantum computers are more efficient in simulating quantum physics than classical computers. While a fully fault-tolerant universal quantum computer will not be realized soon, this dissertation explores quantum algorithms for simulating nuclear physics suitable …

Topological Data Analysis Of Convolutional Neural Networks Using Depthwise Separable Convolutions, Eliot Courtois

Dissertations

In this dissertation, we present our contribution to a growing body of work combining the fields of Topological Data Analysis (TDA) and machine learning. The object of our analysis is the Convolutional Neural Network, or CNN, a predictive model with a large number of parameters organized using a grid-like geometry. This geometry is engineered to resemble patches of pixels in an image, and thus CNNs are a conventional choice for an image-classifying model.

CNNs belong to a larger class of neural network models, which, starting at a random initialization state, undergo a gradual fitting (or training) process, often a …

High Resolution Intracavity Laser Absorption Spectroscopy Of Transition Metal-Containing Diatomic Molecules, Kristin Bales

Dissertations

Three transition metal-containing diatomic molecules have been studied using intracavity laser spectroscopy. Many of the transitions were recorded using a Fourier-transform spectrometer for detection, allowing collection at Doppler-limited resolution for the gas phase molecules. Several vibrational bands in two electronic transition systems of tantalum fluoride (TaF) have been analyzed, and new molecular constants provided. Transitions involving six electronic states of tungsten sulfide (WS) have been analyzed, with new and updated constants provided, including a deperturbation analysis of three vibrational bands in two of the states. Finally, a fresh perspective on two electronic states of tungsten oxide (WO) included a deperturbation …

Near-Ir Spectroscopic Analysis Of The Primary Volatile Composition Of Long And Short-Period Comets, Younas Khan

Dissertations

Comets are among the most well-preserved objects that formed in the protosolar nebula ∼4.5 Gyr ago. Hence, they are important for understanding various aspects of the formation, evolution, and habitability of the solar system. Multiple primary volatiles (molecules directly sublimating into the coma from the nucleus) emit via rovibrational transitions in the near-IR, providing opportunities to calculate their abundances. To date, only ∼50 comets have been characterized for their primary volatiles, with the short-period Jupiter-family comets (JFCs) being significantly underrepresented. In contrast, hundreds of comets have been sampled at optical/UV wavelengths, primarily for the composition of daughter species, leading to …

The Mobility Of Long-Lived Radioisotopes And Their Burial In The Marine Environment, Neil Redmond

Dissertations

Marine sediments record chemical signals that reflect past environmental conditions. It is important to establish how these signals are created and whether they may be altered over time so that they can be useful for reconstructing ocean history. Measurements of uranium isotopes are used as a novel proxy for sedimentary diagenetic processes (Chapter 2). Because ²³⁴U can be ejected from mineral lattice during the decay of ²³⁸U, it creates a pool of U in porewater that is potentially mobilized and then deposited elsewhere in the core. We found that alpha-recoiled ²³⁴U is sensitive to differences in sediment …

Stream-Evolving Bot Detection Framework Using Graph-Based And Feature-Based Approaches For Identifying Social Bots On Twitter, Eiman Alothali

Dissertations

This dissertation focuses on the problem of evolving social bots in online social networks, particularly Twitter. Such accounts spread misinformation and inflate social network content to mislead the masses. The main objective of this dissertation is to propose a stream-based evolving bot detection framework (SEBD), which was constructed using both graph- and feature-based models. It was built using Python, a real-time streaming engine (Apache Kafka version 3.2), and our pretrained model (bot multi-view graph attention network (Bot-MGAT)). The feature-based model was used to identify predictive features for bot detection and evaluate the SEBD predictions. The graph-based model was used to …

Blockchain-Enabled Ehr Sharing In Healthcare Federation: Sharding And Interblockchain Communication, Faiza Hashim

Dissertations

Electronic Health Records (EHRs) are crucial components of the healthcare system, facilitating accurate and efficient diagnosis. Blockchain technology has emerged as a promising solution to improve EHRs sharing among medical practitioners while ensuring privacy and security. By leveraging its decentralized, distributed, immutable, and secure architecture, blockchain has the potential to revolutionize the healthcare system. However, due to security concerns, blockchain networks in healthcare typically operate in private or consortium modes, resulting in isolated networks within a federation. Scalability remains a significant challenge for blockchain networks, as the number of participating nodes increases within each network of the federation. Consensus mechanisms …

Learning Finite Mixture Of Ising Graphical Models, Chong Gu

Dissertations

The Ising model is valuable in examining complex interactions within a system, but its estimation is challenging. In this work, we proposed penalized likelihood procedures to infer conditional dependence structure when observed data come from heterogeneous resources in high-dimensional setting. The proposed method can be efficiently implemented by taking advantage of coordinate-ascent, minorization–maximization principles and EM algorithm. A BIC-type criterion will be utilized for the selection of the tuning parameter in the penalized likelihood approaches. The effectiveness of the proposed method is supported by simulation studies and a real-world example.

Functional Generalized Linear Mixed Models, Harmony Luce

Dissertations

With the advancements in data collection technologies, researchers in various fields such as epidemiology, chemometrics, and environmental science face the challenges of obtaining useful information from more detailed, complex, and intricately-structured data. Since the existing methods often are not suitable for such data, new statistical methods are developed to accommodate the complicated data structures.

As a part of such efforts, this dissertation proposes Functional Generalized Linear Mixed Model (FGLMM), which extends classical generalized linear mixed models to include functional covariates. Functional Data Analysis (FDA) is a rapidly developing area of statistics for data which can be naturally viewed as smooth …

Evaluating The Performance Of Estimators In Sem And Irt With Ordinal Variables, Bo Klauth

Dissertations

In conducting confirmatory factor analysis with ordered response items, the literature suggests that when the number of responses is five and item skewness (IS) is approximately normal, researchers can employ maximum likelihood with robust standard errors (MLR). However, MLR can yield biased factor loadings (FL) and FL standard errors (FLSE) when the variables are ordinal. Other estimators are available. Unweighted least squares and weighted least squares with adjusted mean and variance (ULSMV and WLSMV) are known as the estimators for CFA with ordinal variables (CFA-OV). Another estimator, marginal maximum likelihood (MML), is used in the item response theory (IRT), specifically …

Nonparametric Tests For Replicated Latin Squares, Joseph Yang

Dissertations

Two classes of nonparametric procedures for a replicated Latin square design that test for both general and increasing alternatives are developed. The two classes of procedures are similar in the sense that both transform the data so that existing well-known tests for randomized complete block designs can be utilized. On the other hand, the two classes differ in the way that the data is transformed - one class essentially aggregates the data while the other class aligns the data. Within these contexts, the exact distributions and asymptotic distributions are discussed, when applicable. The exact distributions are easily computed using the …

Machine Learning And Network Embedding Methods For Gene Co-Expression Networks, Niloofar Aghaieabiane

Dissertations

High-throughput technologies such as DNA microarrays and RNA-seq are used to measure the expression levels of large numbers of genes simultaneously. To support the extraction of biological knowledge, individual gene expression levels are transformed into Gene Co-expression Networks (GCNs). GCNs are analyzed to discover gene modules. GCN construction and analysis is a well-studied topic, for nearly two decades. While new types of sequencing and the corresponding data are now available, the software package WGCNA and its most recent variants are still widely used, contributing to biological discovery.

The discovery of biologically significant modules of genes from raw expression data is …

Trustworthy Machine Learning Through The Lens Of Privacy And Security, Thi Kim Phung Lai

Dissertations

Nowadays, machine learning (ML) becomes ubiquitous and it is transforming society. However, there are still many incidents caused by ML-based systems when ML is deployed in real-world scenarios. Therefore, to allow wide adoption of ML in the real world, especially in critical applications such as healthcare, finance, etc., it is crucial to develop ML models that are not only accurate but also trustworthy (e.g., explainable, privacy-preserving, secure, and robust). Achieving trustworthy ML with different machine learning paradigms (e.g., deep learning, centralized learning, federated learning, etc.), and application domains (e.g., computer vision, natural language, human study, malware systems, etc.) is challenging, …

Ai Approaches To Understand Human Deceptions, Perceptions, And Perspectives In Social Media, Chih-Yuan Li

Dissertations

Social media platforms have created virtual space for sharing user generated information, connecting, and interacting among users. However, there are research and societal challenges: 1) The users are generating and sharing the disinformation 2) It is difficult to understand citizens' perceptions or opinions expressed on wide variety of topics; and 3) There are overloaded information and echo chamber problems without overall understanding of the different perspectives taken by different people or groups.

This dissertation addresses these three research challenges with advanced AI and Machine Learning approaches. To address the fake news, as deceptions on the facts, this dissertation presents Machine …

Mapping Programs To Equations, Hessamaldin Mohammadi

Dissertations

Extracting the function of a program from a static analysis of its source code is a valuable capability in software engineering; at a time when there is increasing talk of using AI (Artificial Intelligence) to generate software from natural language specifications, it becomes increasingly important to determine the exact function of software as written, to figure out what AI has understood the natural language specification to mean. For all its criticality, the ability to derive the domain-to-range function of a program has proved to be an elusive goal, due primarily to the difficulty of deriving the function of iterative statements. …

Importance Of Vegetation In Tsunami Mitigation: Evidence From Large Eddy Simulations With Fluid-Structure Interactions, Abhishek Mukherjee

Dissertations

Communities worldwide are increasingly interested in nature-based solutions like coastal forests for the mitigation of coastal risks. Still, it remains unclear how much protective benefit vegetation provides, particularly in the limit of highly energetic flows after tsunami impact. The present thesis, using a three-dimensional incompressible computational fluid dynamics model with a fluid-structure interaction approach, aims to quantify how energy reflection and dissipation vary with different degrees of rigidity and vegetation density of a coastal forest.

In this study, tree trunks are represented as cylinders, and the elastic modulus of hardwood trees such as pine or oak is used to characterize …

Continuum Modeling Of Active Nematics Via Data-Driven Equation Discovery, Connor Robertson

Dissertations

Data-driven modeling seeks to extract a parsimonious model for a physical system directly from measurement data. One of the most interpretable of these methods is Sparse Identification of Nonlinear Dynamics (SINDy), which selects a relatively sparse linear combination of model terms from a large set of (possibly nonlinear) candidates via optimization. This technique has shown promise for synthetic data generated by numerical simulations but the application of the techniques to real data is less developed. This dissertation applies SINDy to video data from a bio-inspired system of mictrotubule-motor protein assemblies, an example of nonequilibrium dynamics that has posed a significant …

V-Shaped Temperature Dependences And Pressure Dependence Of Elementary Reactions Of Hydroxyl Radicals With Several Organophosphorus Compounds, Xiaokai Zhang

Dissertations

Organophosphorus compounds have brought increasing attention since they are widely used as flame-retardants, which can take effect in combustion via reactions with reactive radicals. These reactions are influenced by variables such as temperature and pressure, resulting in a temperature and pressure dependent rate constant. Studying this reaction kinetics has great importance in both combustion reaction and atmospheric environment.

This study is focused on kinetics of several elementary reactions of combustion importance. The kinetics of hydroxyl radicals were studied using pulsed laser photolysis coupled to transient UV-vis absorption spectroscopy over the 295 - 837 K temperature range and the 1 - …

Coronal Magnetometry And Energy Release In Solar Flares, Yuqian Wei

Dissertations

As the most energetic explosive events in the solar system and a major driver for space weather, solar flares need to be thoroughly understood. However, where and how the free magnetic energy stored in the corona is released to power the solar flares remains not well understood. This lack of understanding is, in part, due to the paucity of coronal magnetic field measurements and the lack of comprehensive understanding of nonthermal particles produced by solar flares. This dissertation focuses on studies that utilize microwave imaging spectroscopy observations made by the Expanded Owens Valley Solar Array (EOVSA) to diagnose the nonthermal …

Deep Hybrid Modeling Of Neuronal Dynamics Using Generative Adversarial Networks, Soheil Saghafi

Dissertations

Mechanistic modeling and machine learning methods are powerful techniques for approximating biological systems and making accurate predictions from data. However, when used in isolation these approaches suffer from distinct shortcomings: model and parameter uncertainty limit mechanistic modeling, whereas machine learning methods disregard the underlying biophysical mechanisms. This dissertation constructs Deep Hybrid Models that address these shortcomings by combining deep learning with mechanistic modeling. In particular, this dissertation uses Generative Adversarial Networks (GANs) to provide an inverse mapping of data to mechanistic models and identifies the distributions of mechanistic model parameters coherent to the data.

Chapter 1 provides background information on …

Utilizing New Technologies To Measure Therapy Effectiveness For Mental And Physical Health, Jonathan Ossie

Dissertations

Mental health is quickly becoming a major policy concern, with recent data reporting increasing and disproportionately worse mental health outcomes, including anxiety, depression, increased substance abuse, and elevated suicidal ideation. One specific population that is especially high risk for these issues is the military community because military conflict, deployment stressors, and combat exposure contribute to the risk of mental health problems.

Although several pharmacological approaches have been employed to combat this epidemic, their efficacy is mixed at best, which has led to novel nonpharmacological approaches. One such approach is Operation Surf, a nonprofit that provides nature-based programs advocating the restorative …

Special Education: Inclusion And Exclusion In The K-12 U.S. Educational System, Erik Brault

Dissertations

The U.S. Department of Education defines students with disabilities as those having a physical or mental impairment that substantially limits one or more life activities. Previous research has found that students with disabilities placed in inclusive environments perform better academically and socially compared to students with disabilities who are placed in segregated environments. Yet, we know that inclusion in K-12 general education classrooms across the country is not consistently implemented.

The purpose of this study was to better understand the effects, if any, of general education high school teachers’ personal and professional experiences and knowledge on their attitudes toward educating …

Connecting Social And Ecological Systems In Small-Scale Fisheries In The Philippines, Sara Eisler Marriott

Dissertations

Nearly 50% of all marine fish capture in the Philippines is from artisanal fisheries, most of which is un- or under-reported. As in many emerging nations around the world, the Philippines cannot fully address overfishing by managing only half of the catch that comes from commercial fisheries. Marine reserves are a popular governance strategy for conservation and of growing interest for fisheries management. Many marine reserves in the Philippines, however, are not considered effective. In 2014, Rare, an international NGO, implemented a community-based management program to increase the effectiveness of the marine reserves, and while it found biomass increased, there …

Origin And Structure Of The First Sharp Diffraction Peak Of Amorphous Solids, Devilal Dahal

Dissertations

Several explanations have been reported in the literature about the origin of extended-range oscillations (EROs) in the atomic pair-correlation function of amorphous materials. Although the radial ordering beyond the short-range order of about 5 Å has been extensively studied in amorphous materials, the exact nature of the radial ordering beyond a nanometer is still not resolved. This dissertation address this problem and explains the nature of the EROs by using high-quality models of amorphous silicon (a-Si) obtained from Monte Carlo and Molecular Dynamics simulations. The extended-range ordering in a-Si is examined through radial oscillations on the length …

Loss Scaling And Step Size In Deep Learning Optimizatio, Nora Alosily

Dissertations

Deep learning training consumes ever-increasing time and resources, and that is
due to the complexity of the model, the number of updates taken to reach good
results, and both the amount and dimensionality of the data. In this dissertation,
we will focus on making the process of training more efficient by focusing on the
step size to reduce the number of computations for parameters in each update.
We achieved our objective in two new ways: we use loss scaling as a proxy for
the learning rate, and we use learnable layer-wise optimizers. Although our work
is perhaps not the first …

Topological Data Analysis Of Weight Spaces In Convolutional Neural Networks, Adam Wagenknecht

Dissertations

Convolutional Neural Networks (CNNs) have become one of the most commonly used tools for performing image classification. Unfortunately, as with most machine learning algorithms, CNNs suffer from a lack of interpretability. CNNs are trained by using a training data set and a loss function to tune a set of parameters known as the layer weights. This tuning process is based on the classical method of gradient descent, but it relies on a strong stochastic component, which makes the weight behavior during training difficult to understand. However, since CNNs are governed largely by the weights that make up each of the …

Socially Aware Natural Language Processing With Commonsense Reasoning And Fairness In Intelligent Systems, Sirwe Saeedi

Dissertations

Although Artificial Intelligence (AI) promises to deliver ever more user-friendly consumer applications, recent mishaps involving fake information and biased treatment serve as vivid reminders of the pitfalls of AI. AI can harbor latent biases and flaws that can cause harm in diverse and unexpected ways. It is crucial to understand the reasons for, mechanisms behind, and circumstances under which AI can fail. For instance, a lack of commonsense reasoning can lead to biased or unfair decisions made by Machine Learning (ML) systems. For example, if an ML system is trained on data that is biased or unrepresentative of the real …

Irregular Domination In Graphs, Caryn Mays

Dissertations

Domination in graphs has been a popular area of study due in large degree to its applications to modern society as well as the mathematical beauty of the topic. While this area evidently began with the work of Claude Berge in 1958 and Oystein Ore in 1962, domination did not become an active area of research until 1977 with the appearance of a survey paper by Ernest Cockayne and Stephen Hedetniemi. Since then, a large number of variations of domination have surfaced and provided numerous applications to different areas of science and real-life problems. Among these variations are domination parameters …

Metal Oxide Based Materials For High Performance Supercapacitors, Hammad Mueen Arbi

Dissertations

Recent years have seen a healthy rise in the research and development of sustainable and renewable energy storage systems due to the pressing need to conserve natural resources and cut energy use. Due to the rapid growth in global population lately, there is a tremendous demand for energy to fulfill the ever-increasing needs. Innovative alternative energy sources and energy storage techniques are of tremendous interest for dealing with these current world issues. One promising solution for this is the recent research trend for achieving reliable and cost-effective high power and high energy density energy storage devices. On the basis of …

Ab-Initio Investigation Of 2d Materials For Gas Sensing, Energy Storage And Spintronic Applications, Saba Khan

Dissertations

The field of Two Dimensional (2D) materials has been extensively studied since their discovery in 2004, owing to their remarkable combination of properties. My thesis focuses on exploring novel 2D materials such as Graphene Nanoribbon (GNR), holey carbon nitride C₂N, and MXenes for energy storage, gas sensing, and spintronic applications, utilizing state-of-the-art techniques that combine Density Functional Theory (DFT) and Non-Equilibrium Greens Functions (NEGF) formalism; namely Vienna Ab-initio Simulation Package (VASP) and Atomistic Toolkit (ATK) package.
Firstly, on the side of gas sensing, the burning of fossil fuels raises the level of toxic gas and contributes to global …