Physical Sciences and Mathematics Commons^™

Fake And Spam Messages: Detecting Misinformation During Natural Disasters On Social Media, Meet Rajdev

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

During natural disasters or crises, users on social media tend to easily believe contents of postings related to the events, and retweet the postings, hoping that the postings will be reached by many other users. Unfortunately, there are malicious users who understand the tendency and post misinformation such as spam and fake messages with expecting wider propagation. To resolve the problem, in this paper we conduct a case study of the 2013 Moore Tornado and Hurricane Sandy. Concretely, we (i) understand behaviors of these malicious users; (ii) analyze properties of spam, fake and legitimate messages; (iii) propose flat and hierarchical …

Computational Prediction And Rational Design Of Novel Clusters, Nanoparticles, And Solid State Materials, Alexander S. Ivanov

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The prediction of structure at the atomic level is one of the most fundamental challenges in materials science. Indeed, the structure is arguably the most important piece of information about a material, as it determines pretty much all properties of a material. Knowing the structure, one can analyze a large number of properties of a material, even before it is synthesized – the crucial importance of structure prediction for computational molecular design. This dissertation describes the technique of reliable theoretical predictions and presents the results on the successfully predicted unusual clusters, nanoparticles and solid state materials. The major part of …

Analytical Comparison Of Bovine Parentage Single Nucleotide Polymorphisms, Joshua Jeffrey Dallin

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Often on cattle operations and dairy farms, where multiple bulls are exposed to cows either by live cover or artificial insemination, error can be present in parentage record keeping for breed registries or production use. Research has evolved to the integration of using single nucleotide polymorphisms (SNPs) to answer questions where cases of unknown parentage may exist. With the evolution of the research, differentiated panels have been created specifically for parentage analysis. Our objective was to complete an analytical comparison between two specific panels, a proven 88 parentage SNP panel and a recently developed 25 SNP panel. A smaller panel …

Synthesis Of Fluorogenic Probes For Studying Biomass Degradation And Synthesis Of New Antifungal Aminoglycosides, Qian Zhang

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

For the first project, a library of fifteen commercially purchased and synthetic fluorogenic probes were employed for the investigation of biomass degradation using extract of white-rot fungi. These discoveries prove that it is possible to employ fungi for selective degradation or release of hemicelluloses from biomass. This work is supported by Sun Grant Western Regional Center/DOT "Bioprospecting for Enzymes to Break Lignin-Hemicellulose Bond" ($300,000,09/01/2011-08/31/2013)

The second project is focused on synthesizing new aminoglycoside analogs and exploring the potential to revive traditional antibacterial kanamycin as new type of antifungal agents. Although aminoglycosides antibiotics are mainly used as antibacterial agents, this project …

The Onion Name System: Tor-Powered Distributed Dns For Tor Hidden Services, Jesse Victors

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Tor network is a third-generation onion router that aims to provide private and anonymous Internet access to its users. In recent years its userbase, network, and community have grown significantly in response to revelations of national and global electronic surveillance, and it remains one of the most popular anonymity networks in use today. Tor also provides access to anonymous servers known as hidden services – servers of unknown location and ownership that may provide websites, chat services, or an electronic dead drop. These hidden services can be accessed through any Tor-powered web browser but they suffer from usability challenges …

Annotation Tools For Multivariate Gene Set Testing Of Non-Model Organisms, Russell K. Banks

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Microarray chip technology enables researchers to obtain measures of gene activity for essentially all genes in an organism. After grouping genes into biologically meaningful sets, researchers employ certain statistical tests to identify which gene sets (biological processes) show different levels of activity across different treatment groups. The idea is to identify which biological processes are significantly affected by a certain treatment/condition in a given organism.

Non-model organisms (such as sheep) are not widely studied so gene set membership information is not always readily accessible. This thesis work utilizes two microarray studies involving sheep to provide researchers with working examples of …

A Study Of The Dayside High-Latitude Ionospheric Electrodynamics During Extended Solar Minimum, Janelle V. Jenniges

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This research investigated how electric fields, currents, and charged particles in Earth's high-latitude ionosphere respond to changing input from the sun. The ionosphere surrounds the entire Earth, makes radio communication possible, and can significantly degrade satellite communications and geo-positioning (navigation) capabilities. Many satellites fly within the ionosphere where a solar storm can cause increased satellite drag or destroy onboard electronics. Therefore, understanding and correctly predicting the behavior of this environment is important, and the results from this research will be used to improve current ionospheric models.

A relationship between the level of magnetic activity on Earth due to changes in …

A Chronostratigraphic Record Of Arroyo Entrenchment And Aggradation In Kanab Creek, Southern Utah, Kirk F. Townsend

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The purpose of this study is to explore the processes that lead to the formation of arroyos. Arroyos are entrenched stream channels with steep sides that form by incision into valley-fill sediment, and are common features throughout the southwest United States. Many of these systems formed during the late AD 1800s and early 1900s in one of the most significant historic geomorphic events in the region. At this time, former river floodplains were abandoned, creating terraces. This caused a decline in local water tables and associated changes in stream discharge, vegetative communities, and the ability to irrigate once fertile floodplains. …

Digital Soil Mapping Using Landscape Stratification For Arid Rangelands In The Eastern Great Basin, Central Utah, Brook B. Fonnesbeck

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In some parts of the western US there is limited publicly available soil information that can be used to make land management decisions on both public and private land. A goal of the USDI Bureau of Land Management (BLM) in Utah was to map an area in central Utah where such soil maps and value-added information was not available for management and restoration decisions following a wildfire. In 2007, the Milford Flat Fire had burned more than 363,000 acres, removing vegetation that was holding erosion-sensitive soils in place. Following inconsistent results from stabilization and restoration efforts, this study was funded …

Linking Form And Process In Braided Rivers Using Physical And Numerical Models, Alan Kasprak

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Braided rivers are characterized by their dynamic nature, and are often significantly reshaped during each flood capable of transporting sediment. Over time, they adjust in response to the frequency and magnitude of floods, along with the amount of sediment available for bar building. Factors such as climate change, dam construction, or land use alteration that change the amount of sediment or water available to braided rivers may subsequently affect channel form. One avenue toward understanding braided channel evolution is to develop simple relationships between channel form and sediment transport, and extrapolate those relationships over extended timescales. With funding from the …

Altitudinal Variability Of Quiet-Time Plasma Drifts In The Equatorial Ionosphere, Debrup Hui

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In the modern world, we increasingly depend on space-based systems for our communication, positioning, and navigation systems. These systems depend on electromagnetic waves propagating through the ionosphere. The ionosphere is the medium in the upper atmosphere where, due to presence of the charged atomic and molecular particles and electrons collectively known as plasma, it influences the traveling electromagnetic waves following laws of electrodynamics. Improved models for predicting space weather conditions require improved knowledge of the drifts of these plasmas in the ionosphere. This study is focused on climatology of the altitudinal variations of these plasma drifts in the equatorial latitudes. …

Algorithmic Information Theory Applications In Bright Field Microscopy And Epithelial Pattern Formation, Hamid Mohamadlou

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The incredible patterns of multicellular organisms emerge as a result of the operation of Gene Regulatory Networks (GRN) that work during development. Understanding how GRNs produce these complex multicellular patterns is a significant challenge in biology. The primary goal of this dissertation is to employ Algorithmic Information Theory (AIT), also known as Kolmogorov complexity, to unravel the information complexity of GRNs and the resultant multicellular patterns. To obtain a better understanding of Kolmogorov complexity performance, first we study an application in cell image segmentation.

There are an estimated 20,000-25,000 protein-coding genes in the human genome. The sheer size of the …

Optical Characterization Of Carbon Nanotube Forests, Brian D. Wood

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Carbon nanotube forests are vertically grown tubular formations of graphene. Due to their inherent microstructure and geometry, they are ideal light absorbers over a broad spectrum, making this material an excellent absorber in applications such as radiometry, optical calibration, and stray light suppression. Samples were made with several growth conditions and substrates to provide forests of different morphologies. Optical data of these samples were gathered by taking spectroscopic reflectance and transmittance measurements in the mid-infrared spectral range. Results were correlated to the various forest morphologies. From this, the conditions necessary to maximize the absorption of the forests were found and …

Great Salt Lake Past And Present: Elevation And Salinity Changes To Utah's Great Salt Lake From Railroad Causeway Alterations, James S. White

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Utah's Great Salt Lake contributes and estimated $1.3 billion to the local and regional economy and is a vital food-source for migratory and resident birds. In 1959, the lake was fundamentally changed with construction of an earth-filled, semi-permeable railroad causeway which splits the lake into two "arms". The only flow interaction between these two arms is through the semi-permeable causeway material, and three openings in the causeway. In 2013, two of these causeway openings were closed, and a bridge was proposed to improve flow between arms. Four bridge designs were proposed. I modeled Great Salt Lake water and salt distribution …

Geochemical Characterization Of The Mountain Home Geothermal System, Trevor Alex Atkinson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Mountain Home (MH) geothermal system of the western Snake River Plain (SRP) magmatic province was discovered in 2012 by the Snake River Geothermal Drilling Project. Artesian flowing water with a temperature of 150°C was encountered at a depth of 1745 m below ground surface (mbgs) and extensive mineralized fracture networks of pectolite-prehnite, calcite, and laumontite were discovered in the recovered core. The objectives of this study are to: 1) describe the thermal and compositional history of past geothermal fluids, and 2) compare these fluids to modern fluids in order to characterize the evolution of the MH geothermal system and …

Sequence Stratigraphy, Depositional Environments And Geochemistry Of The Middle Cambrian Bloomington Formation In Northern Utah, Christopher Ryan Jensen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Bloomington Formation (~425 m thick) is a latest Middle Cambrian (~506.5-505 Ma.), mixed warm water, carbonate and shale unit on the Cordilleran passive margin in northern Utah and southern Idaho. The Hodges Shale and Calls Fort Shale Members are shale dominated and the Middle Limestone Member is a thick carbonate. Fossil diversity and abundance is surprisingly low for a Middle Cambrian carbonate/shale formation. Present, however, are 10-50 cm thrombolite mud mounds, associated with Girvanella oncoliths. These mud mounds represent shallow water carbonates that experienced a small flooding event that gives the mud mounds time and proper conditions to build …

The Role Of Thermospheric Neutral Winds In The Mid-Latitude Ionospheric Evening Anomalies, Levan Lomidze

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Earth's ionosphere, which is the ionized part of the upper atmosphere, plays a very important role in ground- and satellite-based radio communication and navigation. During the last half century, a considerable experimental, theoretical, and modeling effort has been directed towards understanding the physical processes that affect the variation of the ionization in the ionosphere at various spatial and temporal scales. Even though tremendous progress has been made in many directions of ionospheric research, many questions remain to be answered.

One of the intriguing features in the ionosphere is an anomalous evening enhancement that occurs over certain mid-latitude locations, where …

Advancement Of Computing On Large Datasets Via Parallel Computing And Cyberinfrastructure, Ahmet Artu Yildirim

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Large datasets require high processing power to compute, high-speed network connections to transmit, or high storage capacity to archive. With the advent of the internet, many in the science community and the public at large are faced with a need to manage, store, transmit and process large datasets in an efficient fashion to create value for all concerned. By example, large environmental researchers analyze large map data to extract hydrologic information from topography. However, processing these data and other tasks is hard – sometimes impossible – in minimal resource environments such as desktop systems.

This dissertation demonstrates novel approaches and …

Cultural Entropy: A Grounded Theory Study Of Early Childhood Experiences In Nature In The Arroyo Grande Creek Watershed, Nathaniel Miles Millard

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Through support from a Quinney Fellowship and the Institute of Outdoor Recreation and Tourism in the Department of Environment and Society at Utah State University, the theory of cultural entropy emerged as an explanation for changing behavior across generations of people living in the Arroyo Grande Creek watershed. Through a trounded theory methodology data collection around early childhood experiences with nature leading towards positive civic engagement with the community, the theory of cultural entropy emerged along with a policy recommendation for reconnecting the community to the local watershed.

Lifelong residents participating in the research were found to have high levels …

Modeling Seed Dispersal And Population Migration Given A Distribution Of Seed Handling Times And Variable Dispersal Motility: Case Study For Pinyon And Juniper In Utah, Ram C. Neupane

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The spread of fruiting tree species is strongly determined by the behavior and range of fruit-eating animals, particularly birds. Birds either consume and digest seeds or carry and cache them at some distance from the source tree. These carried and settled seeds provide some form of distribution which generates tree spread to the new location. Firstly, we modal seed dispersal by birds and introduce it in a dispersal model to estimate seed distribution. Using this distribution, we create a population model to estimate the speed at which juniper and pinyon forest boundaries move.

Secondly, we introduce a fact that bird …

Explicit Construction Of First Integrals For The Toda Flow On A Classical Simple Lie Algebra, Patrick Seegmiller

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Toda flow is a generalization of a dynamical system describing the interaction of particles in a one-dimensional crystal. The concepts and energy and conservation are prominent in the study of dynamical systems, and quantities which remain the same over the evolution of a system provide valuable insights into the system’s behavior. In the realm of mathematics these quantities are called first integrals, or integrals of motion. This paper provides a background for study of the Toda flow, a verification of its integrability, and programming code for finding these quantities which remain unchanged over the evolution of the system.

Factors Related To Successful Completion Of Developmental Mathematics Courses, Jason Bagley

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The goal of this research was to identify factors that contribute to students’ achievement in developmental math courses. This research collected information on several factors which have been suggested to have an effect on student achievement, particularly in developmental math courses at Utah State University, and analyzed their effects on student achievement. The literature review identified several factors that appeared related to student achievement, but many of these studies only analyzed a few factors. Very few studies have tried to analyze multiple variables together to try and identify which factors contribute most to student achievement and which observations can be …

Pathway Pioneer: Heterogeneous Server Architecture For Scientific Visualization And Pathway Search In Metabolic Network Using Informed Search, Vipul Kantilal Oswal

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

PathwayPioneer is a website to visualize the biological models. The complex metabolic models are hard to perceive when read through text format. It is even more difficult to understand the flow of network and different subsystem or pathways. PathwayPioneer organizes different subsystems into simple graphical representation. We simplify the complex network based on subsystem and compartment. Users can do computation (flux balance analysis) through the user interface and perceive the changed model visually. Our system is one of its kind to handle large model files with quick response time.

Biologists are often interested in knowing different alternative pathways targeting a …

Multi-Scale Modeling Of Microbial Defection In The Presence Of Antibiotics, Darshan Dilip Nahar

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Limited environmental resources push life into competition. In terms of microbes, we assume that the only goal is to grow and competition means to grow faster than the peers. Organisms tend to adapt to their environmental conditions and improve their efficiency in using the common resources to grow faster. While different organisms compete they engage into various social behaviors like cooperation to work together towards a common goal, e.g., production of public goods that benefits the entire population. Hence a part of the resources at hand is dedicated to participate in cooperative activities if the cost-to-benefit ratio is less than …

Implementation And Application Of The Curds And Whey Algorithm To Regression Problems, John Kidd

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

A common statistical problem is trying to predict two or more variables using a set of predictor variables. The simplest model for this situation is called multivariate linear regression. This method uses each set of predictor variables to predict each of the response variables separately. This approach seems counter-intuitive as any possible relationship between the variables being predicted is ignored.

Breiman and Friedman found a way to take advantage of relationships among the response variables to increase the accuracy of the predictions for each of the predicted variables with an algorithm they called Curds and
Whey. It uses other statistical …

Climate Forcings On Groundwater Variations In Utah And The Great Basin, Kirsti A. Hakala

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Groundwater levels over northern Utah have undergone a declining trend since the 1960’s. This trend has made apparent the need to understand the relationship between climate and groundwater resources. Such necessary information is already in dire need in places such as California. At the close of 2013, California had experienced its driest year in recorded history, with severe drought continuing for the foreseeable future. Utah is the second driest state in the U.S., and therefore has been paying close attention to California’s current water crises. Water resource projections may prove to be one of the most vital pieces of information …

Family-Wise Error Rate Control In Quantitative Trait Loci (Qtl) Mapping And Gene Ontology Graphs With Remarks On Family Selection, Garrett Saunders

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

One of the great aims of statistics, the science of collecting, analyzing, and interpreting data, is to protect against the probability of falsely rejecting an accepted claim, or hypothesis, given observed data stemming from some experiment. This is generally known as protecting against a Type I Error, or controlling the Type I Error rate. The extension of this protection against Type I Errors to the situation where thousands upon thousands of hypotheses are examined simultaneously is known as multiple hypothesis testing. This dissertation presents an improvement to an existing multiple hypothesis testing approach, the Focus Level method, specific to gene …

Are Experimentally Derived Estimates Of Thermal Tolerance Useful In Interpreting Species Distribution Models, Iva Sokolovska

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Species distribution models are frequently used in ecology to predict the spatial and temporal occurrence of organisms. Direct interpretation of these models assumes that the relationships between the organisms and their environment are manifestations of causal mechanisms. However, in general, the mechanisms producing these associations have not been experimentally validated, which questions our confidence in their interpretation and application. Temperature is one of the most important factors influencing the fitness and distribution of aquatic organisms, and studying the thermal physiology of aquatic invertebrates could provide a useful approach for validating predictions of the species distribution models.

Experimental thermal tolerance studies, …

On The Complexity Of Collecting Items With A Maximal Sliding Agent, Pedro J. Tejada

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

We study the computational complexity of collecting items inside a grid map with obstacles, using an agent that always slides to the maximal extend, until it is stopped by an obstacle. An agent could be, for example, a robot or a vehicle, while obstacles could be walls or other immovable objects, and items could be packages that need to be picked up.

This problem has very natural applications in robotics. The restricted type of motion of the agent naturally models movement on a frictionless surface, and movement of a robot with limited sensing capabilities and thus limited localization. For example, …

Improving Reuse And Maintainability Of Communication Software With Conversation-Aware Aspects, Ali Raza

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Inter-process communications (IPC) are ubiquitous in today’s software systems, yet they are rarely treated as first-class programming concepts. Implementing crosscutting concerns for message-based IPC are difficult, even using aspect-oriented programming languages (AOPL) such as AspectJ. Many of these challenges are because the context of a communication-related crosscutting concern is often a conversation consisting of message sends and receives. Hence, developers typically have to implement communication protocols manually using primitive operations, such as connect, send, receive, and close. This dissertation describes an extension to AspectJ, called CommJ, with which developers can implement communication-related concerns in cohesive and loosely coupled aspects. It …