Physical Sciences and Mathematics Commons^™

A Dynamic State Metabolic Journey: From Mass Spectrometry To Network Analysis Via Estimation Of Kinetic Parameters, Arockia Ranjitha Dhanasekaran

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The term "metabolism" refers to the chemical processes occurring in a living organism to convert the food consumed into the energy needed to maintain a living state. Metabolism consists of two states, namely, a dynamic state and a steady state. In the dynamic state, the rate of chemical conversion of a substance is proportional to the amount of substance available, whereas in the steady state this rate is constant and independent of the amount of substance present (Chapter 4 Figure 1). Like all other fields of engineering, metabolic engineering involves the analysis and synthesis of metabolism. Molecular biological tools for …

Potential Effects Of Altered Precipitation Regimes On Primary Production In Terrestrial Ecosystems, Joanna S. Hsu

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In addition to causing an increase in mean temperatures, climate change is also altering precipitation regimes across the globe. General circulation models project both latitude-dependent changes in precipitation mean and increases in precipitation variability. These changes in water availability will impact terrestrial primary productivity, the fixation of carbon dioxide into organic matter by plants. In my thesis, I addressed the following three questions: 1.) What will be the relative effect of changes in the mean and standard deviation of annual precipitation on mean annual primary production? 2.) Which ecosystems will be the most sensitive to changes in precipitation? 3.) Will …

An Embedded Atom Method Investigation Into The Lattice Dynamics Of Metallic Surfaces, Richard B. Wilson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The explosion in electronic devices over the last half century is a result of the successful development and application of theories that explain the physical properties of solids. For example, the theory of lattice vibrations developed in the first half of the 20^th century has had a huge impact on our ability to understand and design devices. The idea that atoms vibrate together in grouped vibrational modes, called phonons, has enabled scientists to quantify the impact that atomic motion has on mechanical, thermal, electrical, and optical properties. This has aided the creation of all sorts of useful technology ranging …

Pedestrian Leadership And Egress Assistance Simulation Environment (Please), Kyle D. Feuz

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Pedestrian simulation models are used in many different applications including, the design of safer buildings, the validation of fire codes, and automatic video surveillance and tracking. By improving the simulation model used, each of the application areas can experience similar improvements in accuracy. Current simulation models fail to address key concerns in representing pedestrian knowledge and in accurately modeling group formation. This project has at its core the goal of bringing attention these areas of concern and providing an initial look at ways to solve these problems.

The Pedestrian Leadership and Egress Assistance Simulation Environment (PLEASE) is developed specifically to …

The Interrelationship Between The Bio- And Sequence Stratigraphy Of The Middle Cambrian Spence Shale Of Northern Utah And Southern Idaho, Eva Lyon

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This project was undertaken with the objective of discerning the relationship between sea level change and changes in the fauna of the Spence Shale. A combination of field and lab work was employed to undertake this research. The Spence Shale is rich in fossils from the earliest period of visible life on this planet. It provides a unique window onto the evolution of life and changes in the Earth at this time. It is important to study this relationship between sea level and life changes as these conditions are constantly changing, particularly in this day and age. A better understanding …

Determining Co2 Storage Potential: Characterization Of Seal Integrity And Reservoir Failure In Exposed Analogs, Daniel Corey Barton

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Sequestration of carbon dioxide (CO₂) into subsurface porous sandstone is proposed as a method for reducing accumulation of anthropogenic emissions of CO₂ into the atmosphere. Natural exposures of reservoir and top-seal pairs in central and southeastern Utah are identified as analogs to proposed CO₂ injection targets. Reservoir and top-seal pairs in natural analog exposures are analyzed in tandem to evaluate evidence for paleo-migration of fluids and/or hydrocarbons from the reservoir through the top seal. The San Rafael Swell and Monument Uplift exhibit similar structure and exposures of Jurassic units yet differ in amount and type of …

Accelerating Production Of Slow-Growing Intermountain West Native Plants By Modifying Their Microclimate, Sam A. Miller

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Water shortages are a recurring problem in the western US. As much as 70% of yearly municipal water consumption may be used to irrigate urban landscapes. Significant water savings can be realized by installing low water landscapes, where turfgrass is replaced by low water trees, shrubs, grasses, and perennials. Intermountain West (IMW) native trees and shrubs are excellent candidates for low water landscaping. However, due to their slow initial growth, many native trees and shrubs are simply unavailable to consumers, as they are not cost effective for nursery growers to produce. In an effort to accelerate the yearly growth rates …

Test Data Extraction And Comparison With Test Data Generation, Ali Raza

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Testing an integrated information system that relies on data from multiple sources can be a challenge, particularly when the data is confidential. This thesis describes a novel test data extraction approach, called semantic-based test data extraction for integrated systems (iSTDE) that solves many of the problems associated with creating realistic test data for integrated information systems containing confidential data. iSTDE reads a consistent cross-section of data from the production databases, manipulates that data to obscure individual identities while still preserving overall semantic data characteristics that are critical to thorough system testing, and then moves that test data to …

Ecologically-Based Manipulation Practices For Managing Bromus Tectorum-Infested Rangelands, Beth Fowers

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Cheatgrass (Bromus tectorum) is an invasive annual grass common in several semiarid plant communities in the western U.S. B. tectorum presence increases fire frequency and size, reducing species diversity, and leading to annual species-dominated systems with inconsistent livestock forage potential and degraded wildlife habitat value. Most efforts to manage B. tectorum-dominated rangelands have focused on controlling the plant itself rather than addressing the causes of vegetation change. An alternative approach, ecologically-based invasive plant management (EBIPM), identifies treatments that can alter factors associated with the causes of succession, leading to a more desirable vegetation state. This study utilized …

Reducing Reliance On Supplemental Winter Feeding In Elk (Cervus Canadensis): An Applied Management Experiment At Deseret Land And Livestock Ranch, Utah, Dax L. Mangus

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Wildlife managers have fed elk in North America for nearly 100 years. Giving winter feed to elk can compensate for a shortage of natural winter range and may boost elk populations while also helping prevent commingling with livestock and depredation of winter feed intended for livestock. In contrast to these benefits of supplemental feeding, there are economic and environmental costs associated with feeding, and elk herds that winter on feeding grounds have a higher risk of contracting and transmitting disease. Brucellosis is of primary concern now, and Chronic Wasting Disease may be in the future. Many see the discontinuation of …

The Transfer Of Agricultural Water To Municipal And Industrial Usages, Dallin Paul Stephens

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The water that is available for beneficial use in Utah is quickly approaching full appropriation; water that has been claimed is nearing the amount that is available for use. The Division of Water Resources of the State of Utah has organized a three-part plan to "Plan, Conserve, Develop and Protect Utah's Water Resources." One of these three elements has a focus to "provide comprehensive water planning." Such planning is best achieved when current and accurate data on the uses of the state's water are available.

The primary purpose of this thesis was to provide an evaluation, from data collected on …

Graph Kernels And Applications In Bioinformatics, Marco Alvarez Vega

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Nowadays, machine learning techniques are widely used for extracting knowledge from data in a large number of bioinformatics problems. It turns out that in many of such problems, data observations can be naturally represented by discrete structures such as graphs, networks, trees, or sequences. For example, a protein can be seen as a cloud of interconnected atoms lying on a 3-dimensional space. The focus of this dissertation is on the development and application of machine learning techniques to bioinformatics problems wherein the data can be represented by graphs. In particular, we focus our attention on proteins, which are essential elements …

Spatiotemporal Modeling Of Threats To Big Sagebrush Ecological Sites In Northern Utah, Alexander J. Hernandez

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This study tested the performance of classification, regression, and ordination techniques to evaluate the spatiotemporal dynamics of threats to big sagebrush ecological sites. The research was focused on invasion by annual exotic grasses and encroachment by woodlands.

We sought to identify those areas that have had a persistent coverage of cheatgrass (Bromus tectorum) in big sagebrush ecological sites. We took advantage of the contrast in greenness between multi-temporal (within one year) remotely sensed vegetation indices captured in the spring and summer to find a distinct phenological signature that allowed mapping cheatgrass. We utilized support vector machines (SVM) to classify three …

Individualistic Response Of Piñon And Juniper Tree Species Distributions To Climate Change In North America's Arid Interior West, Jacob R. Gibson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Piñon and juniper tree species have species-specific climatic requirements, resulting in unique distributions and differential responses to climate change. Piñons and junipers co-dominate the arid woodlands of North America as groups with widespread hybridization. Two piñons, Pinus edulis; P. monophylla, and four junipers, Juniperus deppeana var. deppeana; J. monosperma; J. occidentalis; J. osteosperma, are endemic to the midlatitude interior west and form three groups of hybridizing sister species, P. edulis-P. monophylla; J. deppeana var. deppeana-J. monosperma; J. occidentalis-J. osteosperma. Recent droughts have caused widespread mortality among piñons, but have had less impact on …

Novel Application Of Neutrosophic Logic In Classifiers Evaluated Under Region-Based Image Categorization System, Wen Ju

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Neutrosophic logic is a relatively new logic that is a generalization of fuzzy logic. In this dissertation, for the first time, neutrosophic logic is applied to the field of classifiers where a support vector machine (SVM) is adopted as the example to validate the feasibility and effectiveness of neutrosophic logic. The proposed neutrosophic set is integrated into a reformulated SVM, and the performance of the achieved classifier N-SVM is evaluated under an image categorization system. Image categorization is an important yet challenging research topic in computer vision. In this dissertation, images are first segmented by a hierarchical two-stage self organizing …

The Effect Of Stream Restoration On Preferred Cutthroat Trout Habitat In The Strawberry River, Utah, Nicolas R. Braithwaite

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Stream restoration has become a popular management tool for attempting to increase and/or restore fish populations by improving habitat. A section of the Strawberry River, Utah recently underwent a stream restoration project, where the main goals of the project included increasing spawning activity, rearing potential, and resident populations of Bear Lake cutthroat trout Oncorhynchus clarkia utah. The impact of the restoration project on cutthroat trout was investigated by first characterizing preferred habitat for different life stages, investigating habitat as a limiting factor in the system, and then assessing the quality of available habitat by comparing restored/unrestored sections of stream …

Dynamics Of Equatorial Spread F Using Ground-Based Optical And Radar Measurements, Narayan P. Chapagain

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Earth's equatorial ionosphere most often shows the occurrence of large plasma density and velocity fluctuations with a broad range of scale sizes and amplitudes. These night time ionospheric irregularities in the F-region are commonly referred to as equatorial spread F (ESF) or plasma bubbles (EPBs). This dissertation focuses on analysis of ground-based optical and radar measurements to investigate the development and dynamics of ESF, which can significantly disrupt radio communication and GPS navigation systems. OI (630.0 nm) airglow image data were obtained by the Utah State University all-sky CCD camera, primarily during the equinox period, from three different longitudinal …

Invertebrate Community Changes Along Coqui Invasion Fronts In Hawaii, Ryan T. Choi

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Puerto Rican coqui frog, Eleutherodactylus coqui, was introduced to Hawaii in the late 1980s via the commercial horticulture trade. Previous research has shown that coquis can change invertebrate communities, but these studies were conducted at small scales using controlled, manipulative experiments. The objective of this research was to determine whether coqui invasions change invertebrate communities at the landscape scale across the island of Hawaii. At each invasion front, we measured environmental variability on either side of the front and removed sites that were too variable across the front to ensure that the impacts we measured were the result …

Study Of Geomagnetic Disturbances And Ring Current Variability During Storm And Quiet Times Using Wavelet Analysis And Ground-Based Magnetic Data From Multiple Stations, Zhonghua Xu

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The magnetosphere-ionosphere contains a number of current systems. These currents vary on a wide range of spatial and temporal scales and physically couple with each other. To study the complicated behaviors of these coupled current systems, the ground-based magnetometer has been a useful tool, but the recorded magnetometer data are always multi-scaled and intermittent due to the nature of these current systems. To distinguish these geomagnetic effects with multiple temporal and frequency scales, the wavelet analysis technique is especially suitable because of its special abilities of presenting information in both temporal and frequency domains. In this dissertation, the geomagnetic disturbances …

Factors Affecting Greater Sage-Grouse (Centrocercus Urophasianus) Survival And Movement In South-Central Utah, Danny Caudill

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Greater sage-grouse are the largest North American grouse species and are dependent on sagebrush for survival. Sage-grouse populations have declined throughout the west. Habitat fragmentation and degradation are likely the main causes of declining populations, and concern has lead to the petitioning for the sage-grouse to be listed under the Endangered Species Act. Survival of adult and juvenile sage-grouse is thought to be limiting population growth. However, survival of juvenile sage-grouse is poorly understood. I aimed to improve the knowledge gap regarding juvenile sage-grouse survival. With improved knowledge of juvenile survival, management actions can be employed to benefit sage-grouse populations. …

From Hillslopes To Canyons, Studies Of Erosion At Differing Time And Spatial Scales Within The Colorado River Drainage, Christopher Tressler

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This thesis includes two different studies in an attempt to investigate and better understand the key characteristics of landscape evolution. In the first study, the rate of surface particle creep was investigated through the use of Terrestrial lidar at an archaeological site in Grand Canyon National Park. The second study developed ways to quantify metrics of the Colorado River drainage and reports the role of bedrock strength in the irregular profile of the trunk Colorado River drainage.

Archaeological sites along the Colorado River corridor in Grand Canyon National Park are eroding due to a variety of surficial processes. The nature …

Examining Child Sexual Abuse And Future Parenting: An Application Of Latent Class Modeling, Kimberly W. D'Zatko

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This study was designed to empirically derive latent classes of mothers who were sexually abused during childhood and to assess the association between depression, alcohol/drug use, supportive intimate partner, and specific classes.

One hundred six women between the ages of 20 and 44 years (M = 27) who reported having been sexually abused during childhood (CSA) and 158 non-CSA mothers between the ages of 20 and 43 years (M = 23) were interviewed and assessed along six parenting dimensions. Logistic regression models evaluated the association between psychoemotional variables and specific classes.

The final model consisted of three classes—53.2%, …

Understanding Teacher Users Of A Digital Library Service: A Clustering Approach, Beijie Xu

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This research examined teachers' online behaviors while using a digital library service—the Instructional Architect (IA)—through three consecutive studies. In the first two studies, a statistical model called latent class analysis (LCA) was applied to cluster different groups of IA teachers according to their diverse online behaviors. The third study further examined relationships between teachers' demographic characteristics and their usage patterns. Several user clusters emerged from the LCA results of Study I. These clusters were named isolated islanders, lukewarm teachers, goal-oriented brokers, window shoppers, key brokers, beneficiaries, classroom practitioners, and dedicated sticky users. …

Surface Morphology Implications On Langmuir Probe Measurements, Padmashri Suresh

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Langmuir probes are extensively employed to study the plasmas in space and laboratory environments. Successful measurements require a comprehensive modeling of both the plasma environment and the probe conditions in the form of current collection models. In this thesis, the surface morphology implications on the probe current collection are investigated. This problem is applied and solved in the context of a CubeSat regime. The first problem that is investigated is the consequence of surface structural variability on the current measurements. A new model for dealing with non-uniformity of the probe surface structure is developed in this paper. This model is …

Computational Efficiency Of A Hybrid Mass Concentration And Spherical Harmonic Modeling, Nathan Piepgrass

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Through Spherical Harmonics, one can describe complex gravitational fields. However as the order and degree of the spherical harmonics increases, the computation speed rises exponentially. In addition, for onboard applications of spherical harmonics, the processors are radiation hardened in order to mitigate negative effects of the space environment on electronics. But, those processors have outdated processing speeds, resulting in a slower onboard spherical harmonic program.

This thesis examines a partial solution to the slow computation speed of spherical harmonics programs. The partial solution was to supplant the gravity models in the flight software. The spherical harmonics gravity model can be …

Graphshop: An Interactive Software Environment For Graph Theory Research And Applications, Aaron Andersen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Graph Theory is the mathematical study of the structure of abstract relationships between objects. Although these constructions (graphs) are themselves purely theoretical, their ability to model pair-wise relationships in systems of arbitrary complexity yields abundant direct correspondence with numerous important physical and societal systems in the real world. Additionally, the simple discrete nature of fundamental graph structures allows for easy pseudo-geometric visualization of graphs in a wide variety of ways. Taken together, these two properties suggest that graph theory teaching, research, and applications would benefit greatly from the use of a unified software environment for graph construction, interaction, and visualization. …

A Fully Automatic Segmentation Method For Breast Ultrasound Images, Juan Shan

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Breast cancer is the second leading cause of death of women worldwide. Accurate lesion boundary detection is important for breast cancer diagnosis. Since many crucial features for discriminating benign and malignant lesions are based on the contour, shape, and texture of the lesion, an accurate segmentation method is essential for a successful diagnosis. Ultrasound is an effective screening tool and primarily useful for differentiating benign and malignant lesions. However, due to inherent speckle noise and low contrast of breast ultrasound imaging, automatic lesion segmentation is still a challenging task.

This research focuses on developing a novel, effective, and fully automatic …

Sedimentological Controls On Fracture Distribution And The Network Development Within Meseverde Group Lithofacies, Uinta Basin, Utah, Ryan Christopher Sonntag

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Mesaverde Group, within the Uinta Basin, Utah, is a source of current significant production and contains several trillion cubic feet of undiscovered natural gas resources. Due to the low permeability of the matrix rock, understanding the geometry and properties of natural fractures is critical to the development of effective ways of finding and producing natural gas. In order to evaluate and model the potential connectivity of hydraulically induced fractures to natural fractures at depth, we examine the nature of the natural fracture network using scanline sampling, imagery analyses, core analyses, and microstructural analyses. Regional fracture sets identified include: N-S …

Stratigraphic, Microfossil, And Geochemical Analysis Of The Neoproterozoic Uinta Mountain Group, Utah: Evidence For A Eutrophication Event?, Dawn Schmidli Hayes

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Several previous Neoproterozoic microfossil diversity studies yield evidence for a relatively sudden biotic change prior to the first well‐constrained Sturtian glaciations. In an event interpreted as a mass extinction of eukaryotic phytoplankton followed by bacterial dominance, diverse assemblages of complex acritarchs are replaced by more uniform assemblages consisting of simple leiosphaerid acritarchs and bacteria. Recent data from the Chuar Group of the Grand Canyon (770‐742 Ma) suggest this biotic change was caused by eutrophication rather than the direct effects of Sturtian glaciation; evidence includes total organic carbon increases indicative of increasing primary productivity followed by iron speciation values that suggest …

Piano Key Weir Head Discharge Relationships, Ricky M. Anderson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

A piano key (PK) weir is a type of nonlinear (labyrinth-type) weir developed specifically for free-surface flow control structures with relatively small spillway footprints. Currently, no generally accepted standard PK weir design procedure is available. This is due, in part, to the large number of geometric parameters and a limited understanding of their effects on discharge efficiency (discharge efficiency is quantified by the discharge coefficient of the standard weir equation). However, Hydrocoop, a non-profit French dam spillways association, has recommended a PK weir design and a head-discharge relationship specific to that geometry.

To develop a better understanding of the effects …