Physical Sciences and Mathematics Commons^™

Reexamining The Croton Aqueduct: A Ward-Level Microhistorical Analysis Of Infrastructure And Cholera Mortality In 1849 New York City, Alexandria R. Toothman

Dissertations, Theses, and Capstone Projects

This work reexamines the Croton Aqueduct’s role in public health by shifting analysis from the citywide level to the ward level, revealing that infrastructure expansion did not produce uniform benefits across New York City. When the Croton Aqueduct opened in 1842, it was celebrated as an achievement that would deliver pure water and eliminate disease. However, only seven years after its opening, in 1849, cholera returned with greater force in the Sixth Ward. This work shows that the uneven distribution of Croton infrastructure corresponded with uneven cholera mortality rates, challenging narratives that present Croton as a singular triumph of urban …

Identifying Textual Predictors Of Early Termination In Clinical Trials In Medicine: An Explainable Machine-Learning Study, Rohan Ramnarain

Dissertations, Theses, and Capstone Projects

About one in five clinical trials in medicine ends early, wasting valuable resources and reducing the evidence available for developing life-saving medical treatments. This project uses a method called Trial2Vec, which is a self-supervised machine-learning method that converts clinical trial documents into dense numerical representations that capture their key design and clinical characteristics, to turn each proposed clinical trial’s written protocol into a compact numerical profile (a process referred to as embedding). These profiles are then paired with a predictive machine learning models to identify the words and phrases in the trial documents that can signal a higher risk of …

Discovery Of Newly Resolved Filament And Extraplanar Gas In M33 With The Local Group L-Band Survey, Emma Taylor Kleiner

Dissertations, Theses, and Capstone Projects

The proximity of the Local Group allows for unparalleled resolution of the structure and kinematics of the ISM while simultaneously observing the overall rotation of the galaxy. These nearby galaxies present the opportunity to probe stellar feedback processes in various galactic environments. M33 in particular, offers insight into the nature of the extended neutral gas and its relationship with the star-forming disk and the surrounding CGM, by way of its classic star-forming spiral and relatively undisturbed system. Outside of M33’s distinguished warp, the galaxy offers little evidence of satellites and shows few signs of interaction, begging the question of how …

Supramolecular Assembly In Short Peptide Systems For Selective Metabolite Recognition And Drug Nanoencapsulation, Maithreyi Ramakrishnan

Dissertations, Theses, and Capstone Projects

Short peptides can form adaptive supramolecular assemblies, and understanding how minimal sequences organize around neurometabolites or hydrophobic cancer drugs enables the rational design of functional materials. This thesis combines molecular dynamics with experimental validation to establish design rules linking peptide sequence to emergent structure and function. Chapter 1 outlines the molecular determinants governing peptide assembly. Chapter 2 reviews computational workflows that reveal sequence-dependent conformations and supramolecular organization. Chapter 3 applies these principles to Dynamic Peptide Libraries which identify tetrapeptides that selectively interact with neurometabolites. Chapter 4 extends the same interaction-driven framework to design tryptophan-rich pentapeptides that co-assemble with kinase inhibitors …

Algorithmic Problems In Automorphic Orbits Of Free Groups, Siobhan B. O'Connor

Dissertations, Theses, and Capstone Projects

One of the fundamental problems in the field of combinatorial group theory is telling when two group presentations represent isomorphic groups. Since applying a free group automorphism to the set of relators of a presentation gives an isomorphic group, we want to be able to quickly decide when looking at a relator whether a given word can be sent to it via an automorphism. We give a hands-on introduction to the automorphisms of free groups using patterns of colored beads. We show that you can make this decision correctly in constant time on average by looking for "orbit-blocking" words that …

Whitney Extension Problem For Fractional Sobolev Spaces And Besov Spaces, Han Li

Dissertations, Theses, and Capstone Projects

In the dissertation, we go through the development of the Whitney extension problem and prove a type of results for the Whitney extension problem for homogeneous fractional Sobolev spaces and homogeneous Besov spaces.

This dissertation consists of four chapters:

Chapter 1: We recall the history of the Whitney extension problem and talk about some early works which have been done for the Whitney extension problem. We also mention our new results.

Chapter 2: We introduce some basic notations, definitions and preliminary results.

Chapter 3: We show the existence of a bounded linear extension operator for homogeneous fractional Sobolev space L …

1d Crust-Magnetosphere Coupling Model For Magnetars, Kennedy M. Jeter

Dissertations, Theses, and Capstone Projects

Magnetars are the most extremely magnetized objects in the universe. Their strong magnetic fields generate high-energy magnetic flares with instantaneous luminosity that can outshine their host galaxy. Previous works have explored how Hall drift in the crust affects the dynamics of magnetic field lines in the magnetosphere. This work investigates how a change in the magnetosphere, such as a flare or an outburst, can excite Hall evolution in the crust. We investigate how the twisting and untwisting of magnetic field lines in a magnetar’s magnetosphere launches Hall waves through its crust using a one-dimensional numerical model. We use the Dedalus …

Transportation Deserts And Structural Mobility Access In New York City, John Cruz

Student Theses

This study examines structural mobility access across New York City census tracts by constructing a tract-level Mobility Access Index (MAI) that integrates employment accessibility, hospital accessibility, and first-mile subway walking burden using MTA GTFS transit data, NYC Taxi and Limousine Commission trip records, and US Census American Community Survey demographic estimates. Three OLS regression models, supplemented by Lasso, Elastic Net, and Random Forest specifications, test whether structural access gaps are associated with short-distance connector trip intensity and per-worker connector cost burden. Results show that MAI varies substantially across tracts, with high access concentrated in Manhattan and along major subway corridors. …

Forecasting Interborough Express Ridership Using Network-Based Station Typologies And Direct Demand Models, Fomba Kassoh

Student Theses

Forecasting ridership for new transit infrastructure is difficult in the absence of observed outcomes, particularly under domain shift between an existing system and a proposed corridor. This study develops a station-level direct demand modeling (DDM) framework to forecast average weekday ridership for the proposed Interborough Express (IBX) in New York City — a 14-mile circumferential rapid transit corridor connecting Brooklyn and Queens. The approach pairs unsupervised learning with supervised estimation in a common feature space defined by transit service, accessibility, and built-environment characteristics. K-means clustering identifies latent station typologies (node–place regimes), and IBX stations are projected into this topology to …

Ai-Infused Writing-Intensive Problems For Introduction To Programming In C++, Esma Yildirim

Open Educational Resources

This exercise book uses Writing-Intensive (WI) pedagogy in an introductory programming course setting, because I believe WI can help students engage in deeper analysis of programming problems while strengthening their critical and analytical thinking skills. In computer science, a single problem can often be solved using multiple algorithms, designs, and implementation strategies. Exploratory thinking and reflective writing can improve students’ ability not only to read and write computer programs, but also to evaluate the efficiency, readability, and maintainability of algorithms and code. Students must learn not only how to design solutions, but also how to compare alternatives and determine the …

Origin And Age Of Fluvioglacial Sediments On Staten Island Ny And Implications For Meltwater Flow, Jane L. Alexander, Victoria Rivelli, Sean T. Thatcher

Publications and Research

In the northeastern United States, sediments related to the expansion and contraction of the Laurentide ice sheet have been extensively mapped throughout New England, as well as in New Jersey and on Long Island. However, linking these deposits around New York City is challenging due to the extensive urbanization. Staten Island is less developed than the other boroughs of New York City, however outcrops of rock and surface sediment are limited, making interpretation of its geologic history challenging. When small areas of sediment are temporarily exposed, they can be used to improve our understanding of sediment erosion and deposition over …

Microtubules In Breast Cancer: Exploring The Α/Β-Tubulin Toggle Switch And Its Implications In Human Breast Cancer, Annemarie Ianos

Student Theses and Dissertations

Microtubules, composed of a/b-tubulin heterodimers, play a central role in breast cancer tumor growth by polymerizing, leading to metastasis and depolymerizing, contributing to proliferation. Human enzymes protein kinase Ca (PKC-a) and cyclin-dependent kinase 1 (Cdk-1) mediate phosphorylation at sites a:Ser165 and b:Ser172, respectively, influencing the growth of microtubules. It is possible that alternating phosphorylation at these sites contribute to an a/b-tubulin “toggle switch” that mediates microtubule instability and tumor growth.

The project investigates the influence of the toggle switch model on microtubule stability by determining the impact of mutants (a:S165D, a:S165N, a:S165S_P, b:S172S_P and a:S165S_P/b:S172S …

What Is The Skeleton Of Cognition? A Structural Account Of World Reconstruction Through Processing Axes, Griselda Poe

Publications and Research

This paper describes how the placement of a single processing axis reorganizes human cognition and generates a reconstructed world.

Most existing psychological and social theories begin from emotion, desire, morality, or social behavior. In doing so, they have discussed what forms on top of the cognitive skeleton without first fixing the skeleton itself. When the skeleton is not fixed, entirely different explanations of the same phenomenon can coexist, and it becomes difficult to identify which constitutes a foundational account.

This paper fixes the skeleton first. That skeleton is the processing axis.

The question is: when a single processing axis organizes …

Deep Learning Compilers, Raffi Khatchadourian

Open Educational Resources

These lecture slides introduce deep learning compilers for a graduate compiler-construction course (CSc 81010). Building on the classical compiler pipeline, they show how modern machine-learning systems compile tensor programs: static tensor and type analysis (illustrated by a WALA/Ariadne-based refactoring of imperative TensorFlow code to graph mode), MLIR-based end-to-end compilation with IREE, and the PyTorch 2.x stack—TorchDynamo graph capture, AOTAutograd, PrimTorch operator decomposition, and TorchInductor lowering to Triton (GPU) and C++/OpenMP (CPU). The slides are a self-contained HTML (W3C Slidy) deck with editable Pandoc Markdown source. Part of a two-session unit on advanced compiler topics; see also "LLMs in Compiler Construction."

Llms In Compiler Construction, Raffi Khatchadourian

Open Educational Resources

These lecture slides survey the use of large language models (LLMs) in compiler construction for a graduate compiler course (CSc 81010). They situate LLMs across the compiler pipeline and examine representative work: foundation models trained on LLVM IR and assembly (Meta's LLM Compiler), LLM-driven code optimization, binary decompilation (LLM4Decompile), and LLM-assisted automated refactoring—alongside the challenges of applying probabilistic models to tasks that demand correctness. The slides are a self-contained HTML (W3C Slidy) deck with editable Pandoc Markdown source. Part of a two-session unit on advanced compiler topics; see also "Deep Learning Compilers."

What History Shows: A Structural Account Of Fixed-Point Theory Formation, Griselda Poe

Publications and Research

Theory generation has long been subsumed under categories such as creativity, genius, and innovation. These categories do not distinguish assembly-based conceptual synthesis from fixed-point theory generation.

This paper makes that distinction explicit. The termination condition of assembly is external: data, citation, endorsement, usability. The termination condition of fixed-point theory generation is internal: consistency with internally held constraints, resolution of structural contradiction. The two operate under different processing conditions.

The historical record confirms this distinction. What Darwin, Einstein, Spinoza, and Kant produced was not assembly. Their processes involved unresolved branch retention and decomposition necessity, arriving at internally constrained fixed-point termination. Freud …

Propasafe-Hybrid: A Text-Based Hybrid Propaganda Detection Tool, Thomas Kimmeth, Avijit Roy, Vivek Sharma

Publications and Research

Propagandistic content increasingly circulates through online news and social media, where readers often encounter it with limited scrutiny, highlighting the need for reliable and fine-grained detection. This paper introduces Propasafe-Hybrid, a sentence-level system that integrates a fine-tuned transformer classifier with LLM-based technique classification to identify, label, and explain specific propaganda strategies. The pipeline generates actionable outputs, including highlighted sentences, technique assignments, and concise rationales, so users can immediately understand why a sentence was flagged and how each label was determined. To control inference cost, Propasafe-Hybrid employs a cost-aware pre-filtering stage that forwards only high-likelihood sentences to LLMs, reducing token usage …

Radar Spoofing Attacks And Their Impact On Sensor Fusion-Based Perception For Autonomous Vehicles, Ahmad Mohammed Bara

Student Theses

Safe autonomous vehicle (AV) operation depends on robust perception of the surrounding environment. While multimodal sensing—integrating cameras, LiDAR, and radar—provides comprehensive environmental awareness, radar’s robustness under adverse conditions has made it a critical component of modern perception pipelines. However, the security vulnerabilities of radar within these fusion architectures remain largely unexplored. This work presents an end-to-end analysis of radar spoofing attacks on learning-based radar–camera fusion systems. Using a simulation framework grounded in reflect-array attack models, we inject physically plausible perturbations into radar measurements by altering depth by and velocity, while maintaining crossmodal consistency. Evaluation on the nuScenes dataset shows that …

Propasafe-Hybrid: A Text-Based Hybrid Propaganda Detection Tool (Ila 2026 Presentation), Thomas Kimmeth, Avijit Roy, Vivek Sharma

Publications and Research

This presentation introduces Propasafe-Hybrid, a hybrid system for sentence-level propaganda detection that combines offline transformer-based classification with selective large language model (LLM) explainability. The system employs a two-stage pipeline in which a local BERT-based classifier evaluates all input text and filters non-propagandistic content, while only high-confidence candidates are forwarded to an LLM for rhetorical technique labeling and explanation. This design enables cost-aware, privacy-conscious, and scalable analysis by reducing unnecessary reliance on external models.

Propasafe-Hybrid identifies propagandistic techniques such as loaded language, obfuscation, and appeal to fear, and generates concise natural language rationales that make these techniques interpretable to users. By …

Processing Conditions In Narrative Interpretation: A Structural Account Of Cf/Ef Divergence In "The Clerk's Tale”, Griselda Poe

Publications and Research

This paper applies the framework established in Paper 19, "Cognition Is Not Content: A Structural Account of Processing Conditions," to re-describe Chaucer's "The Clerk's Tale" from The Canterbury Tales.

The same narrative produces two incompatible interpretations: a record of domestic violence, and a story of genuine love. This divergence does not arise from differences in ethical judgment or emotional response. It arises from structural differences in the conditions under which information is reconstructed.

This paper does three things. First, it analyzes the characters Walter and Griselda in terms of CF (Core-foregrounded) and EF (Modulation-foregrounded) processing conditions. Second, it describes …

The Space In Between, Cailyn Dawson

Theses and Dissertations

This paper asks the question: is it possible for our bodies to hold contradicting identities at the same time?  Through monochromatic self- portraits, the artist creates a link between quantum mechanics and painting, using the principle of superposition to depict these multiple unformed states of being.

Software Integration In Personal Healthcare Devices And The Patient User Experience, Yassine Chahid, Patrick Slattery

Publications and Research

This study examines the current landscape and future direction of medical device hardware and software integration, focusing on how each contributes to patient care. It begins by analyzing hardware focused medical devices, such as implantable tools patients may rely on to assist with their condition, alongside diagnostic and monitoring equipment used to treat conditions in a variety of medical areas (e.g. cardiovascular conditions). It then evaluates how software is currently integrated through embedded systems, data processing, and user interfaces that support real time monitoring and clinical decision making, and how this impacts quality of care for the patient whilst minimizing …

Cognition Is Not Content: A Structural Account Of Processing Conditions, Griselda Poe

Publications and Research

Human cognition has been described in terms of content. This description becomes insufficient once artificial systems make output observable apart from subject attribution, intention, and relational context. Under this contrast condition, what becomes visible is a layered structure in which output, reconstruction, evaluation, and termination do not necessarily coincide. The same input may register as complete under one processing condition while remaining unresolved under another. This separability means that content-based description does not merely omit an additional variable: it can mislocate a processing difference as a difference in meaning, personality, intention, ability, or attitude. This is not a proposal for …

Reading The Room: A Structural Account Of Constraint-Based Processing And Its Limits In Artificial Systems, Griselda Poe

Publications and Research

This paper does not introduce a new structure.

It makes explicit a structural relation implied but not directly stated in prior work.

Human interpersonal processing is grounded in the co-presence of internal constraint and dependency.

These do not exist as separable components.

They form a single structural condition.

This paper shows that what is commonly described as “reading the room” is not a unitary function.

It differs across configurations in how this condition is processed.

In EF configurations, the effect of this condition is expressed through translation into self-return: outputs are evaluated in terms of how they return to the …

Extreme Cf: A Structural Account Of Processing Absence And Category Absence In Cf-Foregrounded Configurations, Griselda Poe

Publications and Research

Existing frameworks of cognition and intervention assume that processing occurs, meaning is available, and evaluation can be applied.

This paper describes a configuration in which this assumption does not hold.

In CF-foregrounded processing where modulation is absent, processing occurs only when coherence is satisfied. When coherence is not satisfied, processing does not occur. Under this condition, no representation is generated, no evaluation applies, and no action selection is produced.

Within single-layer cognitive models, EF and CF are not distinguished. Within such models, CF does not exist as a condition.

This configuration has not been represented as a category within existing …

Climate Change And Transportation, Paul J. Marchese

Open Educational Resources

This module examines how climate change is affecting transportation systems across multiple sectors, including roads, rail, air, maritime, and active transportation. It highlights key climate trends such as rising temperatures, sea level rise, and extreme weather, and explains how these factors disrupt infrastructure, operations, and safety. The module also explores the economic, operational, and policy challenges associated with maintaining resilient transportation systems under changing environmental conditions. Finally, it presents a range of adaptation and mitigation strategies, emphasizing engineering solutions, sustainable technologies, and data-driven decision-making.

Pre-Experiential Constraint Reconstruction: A Structural Account Of The Prior Layer In Dialogue With Jung, Griselda Poe

Publications and Research

Experiences commonly described as pre-experiential memory—such as immediate recognition, familiarity without prior exposure, and the sense of "already knowing"—are typically interpreted as the retrieval of stored content. However, this storage-based account does not provide a structurally consistent explanation of how such content is preserved prior to experience or reactivated in a form that aligns with present input.

This paper extends the three-layer cognitive architecture developed in prior work in this series (Poe, 2026n), in which cognition operates across Core processing, Modulation, and an operationally inaccessible Prior layer that supplies constraints to all processing.

This paper proposes an alternative account in …

The Core-Modulation Architecture (Cma): A Structural Overview Of Hallucination As Structural Mismatch, Griselda Poe

Publications and Research

Hallucination is defined not as factual error but as a structural failure of alignment across target, layer, and constraint.

Within the Core-Modulation Architecture (CMA), cognition proceeds through layered processing and requires layer-specific termination conditions. Hallucination arises when Modulation-level termination is registered as completion while Core-level resolution has not occurred, producing structurally ungrounded but locally coherent outputs.

Detection is therefore structural rather than content-based, focusing on layer mismatch and termination failure.

This document presents a minimal structural account of hallucination within the CMA framework.

Ai Method For Classification Of Diagnosis Of Near-Infrared Breast Lesion Images, Kaiquan Chen, Fangyang Shen, Honggang Wang, Zhengchao Dong, Jizhong Xiao, Ming Ma, Afroza Aktar, Christopher Chow, Wenxiong Zhang

Publications and Research

In near-infrared optical breast lesion screening and diagnosis systems, high-speed four-dimensional scanners can dynamically acquire tens of thousands of lesion images within a five-minute period. Currently, manual computer annotation is required to generate standard samples from these scanned breast lesion images, a process that depends heavily on physicians with clinical expertise. On average, a single physician can annotate only approximately ten samples per working day. As a result, this process is time-consuming and labor-intensive, and the collected samples often suffer from low accuracy, large variability, and limited diagnostic reliability. Several AI-based annotation tools, such as QuPath, HALO AI™, and X-AnyLabeling, …

Searching Within Galaxies For The Earliest Signs Of Quenching With Spatially Resolved Star Formation Histories In Uvcandels Galaxies At Z < 0.3, Charlotte Olsen, Eric Gawiser, Charlotte Welker, Harry Teplitz, Kartheik Iyer, Xin Wang, Marc Rafelski, Rogier A. Windhorst, Anton Koekemoer, Anahita Alavi, Ben Sunnquist, Norman Grogin, Yicheng Guo, Christopher J. Conselice, L. Y. Aaron Yung, Kalina Nedkova, Bahram Mobasher, Ray A. Lucas, Vihang Mehta, Y. Sophia Dai, Jonathan P. Gardner

Publications and Research

Understanding the complicated processes that regulate star formation and cause a galaxy to become quiescent is key to our comprehension of galaxy evolution. We used eight well-resolved star-forming z < 0.3 galaxies from the UVCANDELS survey, where a total of 10 Hubble Space Telescope bands, including UV follow-up in UVIS/F275W, allow us to reconstruct the star formation histories (SFHs) of regions across each galaxy. This approach provides a powerful tool to explore the spatiotemporal connection between star formation and galaxy evolution. The spatial and temporal profiles of stellar mass and star formation rate (SFR) surface density were obtained from the SFHs of these regions. We measure scaling relations and projected radial profiles of regions within each galaxy at the time of observation and at 1 Gyr lookback time, noting possible trends in the evolution. By comparing the change in star formation over time, we can infer the timing and location of star formation and see early signs of star formation shutting off before quenching occurs. We compared the SFR density–stellar mass density scaling relations for individual galaxies as they evolve from 1 Gyr lookback time. The correlation lines pivot around a log-stellar mass surface density of 7.25 [M⊙ kpc−2], which may be evidence of a self-regulating process on these scales. Radial profiles of the galaxy logarithmic specific SFR (sSFR) show an overall decrease over 1 Gyr, but five galaxies show a greater change in log(sSFR) at the outskirts than the center, indicating a possible early onset of quenching in these galaxies.