Physical Sciences and Mathematics Commons^™

Probiotic Intervention Does Not Affect Recovery Of Hippocampal Memory Following Disruption From High-Fat Diets In Adult Female Rats, Trisha Patel, Cameron Smith

Science University Research Symposium (SURS)

High-fat diets are prevalent in the United States and other countries, contributing to potential health concerns. Previous research has shown that foods with high-fat levels can lead to deficits in spatial memory and alter the hippocampus, a brain area important for spatial learning and memory. Research has also shown that memory deficits can be improved and sometimes restored by increasing the levels of probiotic intake while consuming a high-fat diet. In a previous experiment, adult female rats were fed a high-fat diet and showed spatial memory impairments. The rats were then reverted back to a control, low-fat diet and split …

Data From: Climate Change-Driven Cumulative Mountain Pine Beetle-Caused Whitebark Pine Mortality In The Greater Yellowstone Ecosystem, William W. Macfarlane

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In 2018-2019 the Landscape Assessment System (LAS), an aerial survey method was used to assess mountain pine beetle (Dendroctonus ponderosae; MPB) - caused mortality of whitebark pine (Pinus albicaulis) across the Greater Yellowstone Ecosystem (59000 km2; GYE). This consisted of 11,942 km of flightlines, along which 4,434 geo-tagged, oblique aerial photos were captured and processed. A mortality rating of none to severe (0 to 4 nt attack or 5.0 5.4 old attack) was assigned to each photo based on the amount of red (recent attack) and gray (old attack) trees visible. The method produced a photo inventory of 74 percent …

Data From: Root Distributions Predict Shrub-Steppe Responses To Precipitation Intensity, Andrew Kulmatiski, Karen H. Beard

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Precipitation events are becoming more intense around the world, changing the way water moves through soils and plants. Plant rooting strategies that sustain water uptake under these conditions are likely to become more abundant (e.g., shrub encroachment). Yet, it remains difficult to predict species responses to climate change because we typically do not know where active roots are located or how much water they absorb. Here, we applied a water tracer experiment to describe forb, grass, and shrub root distributions. These measurements were made in 8 m by 8 m field shelters with low or high precipitation intensity. We used …

Impact Of Climate Change On Surgery: A Scoping Review To Define Existing Knowledge And Identify Gaps, Tina Bharani, Rebecca Achey, Harris Jamal, Alexis Cherry, Malcolm K. Robinson, Guy J. Maddern, Deirdre K. Tobias, Divyansh Agarwal

Department of Surgery Faculty Papers

With climate change accelerated at a worrisome rate, global warming also will have implications for surgery and surgical practice. The goal of this current study was to systematically survey the literature and better understand how climate change has affected surgical disease burden, surgical care delivery, and surgical outcomes. We performed a comprehensive scoping review, screening 3334 unique citations from three databases – 1766 from Embase, 1329 from Pubmed and 239 from Scopus – to identify studies that had associated climate change with surgery. After systematic searching, quality appraisal, and data extraction, we synthesized findings from qualitative and quantitative studies. Twenty-six …

Long-Acting Cabotegravir And The Emergence Of Drug-Resistant Hiv, Katharine Gurski

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Environmental, Ecological, And Epidemiological Applications: Introduction To Mathematical Modeling, Suzanne Sumner

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Optimal Harvest Control Within A Predator-Prey System: A Case Study In Chesapeake Bay Fishes, Iordanka Panayotova

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Msis-Glenn: Natural Selection In Wolves Leads To Domesticated Dogs Predicted By Agent-Based Model Simulations, Alex Capaldi, David C. Elzinga

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Compartmental Modeling For The Neophyte: An Application Of Berkeley-Madonna, Olcay Akman, Siddharth Bhumpelli, Cody Cline, Christopher Hay-Jahans

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Kentucky Karst Dye Trace Database, Sarah M. Arpin, Benjamin W. Tobin, Maaz Fareedi, Adam Link, James C. Currens

Research Data--KGS

This dataset provides the geographical locations of karst groundwater basins, groundwater flowpaths, and dye injection/recovery points in Kentucky. Dye tracing is a common method used for understanding groundwater movement. Dye is poured (or injected) into a sinking stream, well, sinkhole, or body of water, where it is carried down-gradient by flowing water. The locations at which dye is recovered (typically at artesian springs) indicates a connection from injection to recovery site. This connection is refered to as a groundwater flowpath. Conducting multiple dye traces across an area allows for the interpretation of regional groundwater flow by assessing where flowpaths either …

Utilizing Low-Cost Sensors To Monitor Indoor Air Quality In Mongolian Gers, Callum Flowerday, Jaron C. Hansen, Phil Lundrigan, Christopher Kitras

Faculty Publications

Air quality has important climate and health effects. There is a need, therefore, to monitor air quality both indoors and outdoors. Methods of measuring air quality should be cost-effective if they are to be used widely, and one such method is low-cost sensors (LCS). This study reports on the use of LCSs in Ulaanbataar, Mongolia to measure PM_2.5 concentrations inside yurts or “gers”. Some of these gers were part of a non-government agency (NGO) initiative to improve insulating properties of these housing structures. The goal of the NGO was to decrease particulate emissions inside the gers; a secondary result …

Broadband Cavity-Enhanced Absorption Spectroscopy (Bbceas) Coupled With An Interferometer For On-Band And Off-Band Detection Of Glyoxal, Callum Flowerday, Jaron Hansen, Ryan Thalman

ScholarsArchive Data

These data are the raw data from the BBCEAS. The "data_" files are the PMT data and the "DualDetection_08_02_2023" files are the spectrograph data. The PMT data are found in column 7 of the sheet. Column 1 is the time stamp.

Nalidarturbopauseshear, Titus Yuan

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The USU Na lidar has been upgraded to be able to measure temperature and winds in the lower thermosphere up to ~ 115 km routinely. The new capability, coupled with the existing nightglow instruments at USU, enables the investigation of the extreme large wind and shears in this region and their correlation to the atmospheric gravity waves activities in the upper mesosphere.

Gsprint23/Congressionaltwitternetwork: Data In Brief Article, Gina Sprint

Computer Science Faculty Scholarship

This repository stores the accompanying code and data for the weighted, bidirectional graph (henceforth referred to as a "Twitter Influence Network" graph) presented in the research papers 1. Fink et. al "A centrality measure for quantifying spread on weighted, directed networks" Physica A, 2023 (DOI link: https://doi.org/10.1016/j.physa.2023.129083) and 2. Fink et. al "A Congressional Twitter network dataset quantifying pairwise probability of influence" Data in Brief (https://doi.org/10.1016/j.dib.2023.109521 or https://repository.gonzaga.edu/physicsschol/2). This graph represents the how information flows in a network of US Congress members. Tweets from these members span the date range between February 9, 2022, and June 9, …

Hydrology Data For Fern Cave, Alabama (2020-2022), Benjamin Tobin, Benjamin V. Miller, Matthew Niemiller, Andrea Erhardt

Research Data--KGS

Dataset includes water level from four sites within Fern Cave in Jackson County Alabama. Additionally, it includes chemistry of water, sediments and cave-adapted isopods.

Long Island Sound Reef Gis Data, Robert M. Cerrato, Matthew Sclafani

SoMAS Research Data

High-resolution backscatter and bathymetric maps created by multibeam sonar surveys were used to identify different seafloor bottom types within existing, potentially expanded, and newly proposed reef areas in New York waters. Existing sites included Smithtown in Long Island Sound (LIS), and Rockaway, Atlantic Beach, Hempstead, Yellowbar, Kismet, Fire Island, Twelve Mile along the South Shore. Potential expansions are proposed on the South Shore for McAllister, Moriches, and Shinnecock reefs in addition to a new site called Sixteen Fathom. In Long Island Sound, new sites are proposed for Huntington/Oyster Bay, Port Jefferson/Mount Sinai, and Mattituck. Grab samples were collected within these …

South Shore Of Long Island Reef Gis Data, Robert M. Cerrato, Matthew Sclafani

SoMAS Research Data

High-resolution backscatter and bathymetric maps created by multibeam sonar surveys were used to identify different seafloor bottom types within existing, potentially expanded, and newly proposed reef areas in New York waters. Existing sites included Smithtown in Long Island Sound (LIS), and Rockaway, Atlantic Beach, Hempstead, Yellowbar, Kismet, Fire Island, Twelve Mile along the South Shore. Potential expansions are proposed on the South Shore for McAllister, Moriches, and Shinnecock reefs in addition to a new site called Sixteen Fathom. In Long Island Sound, new sites are proposed for Huntington/Oyster Bay, Port Jefferson/Mount Sinai, and Mattituck. Grab samples were collected within these …

Raw Diffraction Data For 1tel-Aa-Vwa (Sumo), Wwpdb Id: 7n1o, Moriah H. Mathis, Braydan D. Bezzant, Diana T. Ramírez, Supeshala D. Nawarathnage, Tzanko I. Doukov, James Moody

ScholarsArchive Data

This X-ray diffraction dataset was collected on October 21Oct2020 at SSRL Beamline BL9-2. The crystal was of Batch 1 1TEL-AA-vWa (SUMO) The solved structure used frames 1-999 and has been deposited in the wwPDB under the PDB ID 7N1O. This data can be readily processed using XDS, AutoProc, CCP4, HKL2000/3000, or other crystallographic X-ray diffraction data processing software. The files have a human-readable header but are otherwise binary.

Raw Diffraction Data For 3tel-Hlx-Darpin (Sumo), Wwpdb Id: 7n2b, Supeshala D. Nawarathnage, Parag Laljibhai Gajjar, Derick R. Bunn, Cameron Stewart, Tzanko I. Doukov, James Moody

ScholarsArchive Data

This X-ray diffraction dataset was collected on October 21Oct2020 at SSRL Beamline BL9-2. The crystal was of 3TEL-hlx-DARPin (SUMO) The solved structure used frames 1-1799 and has been deposited in the wwPDB under the PDB ID 7N2B. This data can be readily processed using XDS, AutoProc, CCP4, HKL2000/3000, or other crystallographic X-ray diffraction data processing software. The files have a human-readable header but are otherwise binary.

Data Supporting The Paper "Droplet Growth Or Evaporation Does Not Buffer The Variability In Supersaturation In Clean Clouds", Jesse Anderson, Ian Helman, Raymond Shaw, Will Cantrell

Michigan Tech Research Data

Water vapor supersaturation in clouds is a random variable that drives activation and growth of cloud droplets. The Pi Convection-Cloud Chamber generates a turbulent cloud with a microphysical steady-state that can be varied from clean to polluted by adjusting the aerosol injection rate. The supersaturation distribution and its moments, e.g., mean and variance, are investigated for varying cloud microphysical conditions. High-speed and co-located Eulerian measurements of temperature and water vapor concentration are combined to obtain the temporally resolved supersaturation distribution. This allows quantification of the contributions of variances and covariances between water vapor and temperature. Results are consistent with expectations …

Assessing Boil Water Notices As Health-Risk Communication: Risk Perceptions, Efficacy, And Compliance During Winter Storm Uri, Ashleigh M. Day, Sydney O'Shay, Khairul Islam, Matthew W. Seeger, Shawn P. Mcelmurry

Open Data at Wayne State

Winter Storm Uri was an extreme disaster that impacted much of the United States during February of 2021. Texas and Oklahoma were generally not prepared for such an event and experienced massive power grid failures. This led to cascading risks including water system disruptions and many boil water notices (BWNs). The breakdown of some communication channels and the inability to enact protective actions due to power outages, as well as travel limitations on public roads, complicated both dissemination and implementation. Under these conditions, a non-representative, cross-sectional, survey was collected to assess individuals experience BWNs and how perceived efficacy impacts compliance. …

Modeling Honeymoon And Divorce Effects In Wolbachia Control Trials Of Dengue, Casey P. O'Brien

Biology and Medicine Through Mathematics Conference

No abstract provided.

In Quest Of A Shared Planet: Negotiating Climate From The Global South, Naveeda Khan

Literary Studies

Based on the author’s eight years of fieldwork with the United Nations-led Conference of Parties (COP), In Quest of a Shared Planet offers an illuminating first-person ethnographic perspective on climate change negotiations. Focusing on the Paris Agreement, anthropologist Naveeda Khan introduces readers to the only existing global approach to the problem of climate change, one that took nearly thirty years to be collectively agreed upon. She shares her detailed descriptions of COP21 to COP25 and growing understanding of the intricacies of the climate negotiation process, leading her to ask why countries of the Global South invested in this slow-moving process …

Procedural Level Generation For A Top-Down Roguelike Game, Kieran Ahn, Tyler Edmiston

Honors Thesis

In this file, I present a sequence of algorithms that handle procedural level generation for the game Fragment, a game designed for CMSI 4071 and CMSI 4071 in collaboration with students from the LMU Animation department. I use algorithms inspired by graph theory and implementing best practices to the best of my ability. The full level generation sequence is comprised of four algorithms: the terrain generation, boss room placement, player spawn point selection, and enemy population. The terrain generation algorithm takes advantage of tree traversal methods to create a connected graph of walkable tiles. The boss room placement algorithm randomly …

Minions Fitness Tracker, Mohammad Hasibur Rahman

2023 MathWorks Fitness Tracker Challenge-Archive

I made a fitness tracker that counts the steps of user using their mobile device. I made this tracker using MATLAB sensor and added the sensor path with the mobile device, the tracker would count the number of steps taken by finding peaks in acceleration data.

Spot1328 Meira Spit, Robert C. Mahon, Elizabeth J. Trower, Benjamin P. Smith, Tyler A. Lincoln, Juliana Olsen-Valdez, John S. Magyar, Cedric J. Hagen

2D Wave Spectral Data, South Arm, Great Salt Lake, Utah

Data in this folder are produced by a SoFarOcean Spotter wave buoy deployed along the south arm of the Great Salt Lake, near Antelope Island State Park from the period of July 13, 2021 through June 28, 2022, in relatively shallow water, approximately 1.6m.

IMPORTANT NOTE: Water depths for #1328 (Miera Spit) started at ~1.7 m, but dropped rapidly to 0.9 m on July 15, 2021 and dropped further to ~0.4 m on August 17, 2021. The timing of these rapid water depth changes matches the timing of buoy location changes when the anchor was dragged inshore by waves. When …

Spot1328 Meira Spit Derived Data, Robert C. Mahon, Elizabeth J. Trower, Benjamin P. Smith, Tyler A. Lincoln, Juliana Olsen-Valdez, John S. Magyar, Cedric J. Hagen

2D Wave Spectral Data, South Arm, Great Salt Lake, Utah

Data in this folder are produced by a SoFarOcean Spotter wave buoy deployed along the south arm of the Great Salt Lake, near Antelope Island State Park from the period of July 13, 2021 through June 28, 2022, in relatively shallow water, approximately 1.6m.

IMPORTANT NOTE: Water depths for #1328 (Miera Spit) started at ~1.7 m, but dropped rapidly to 0.9 m on July 15, 2021 and dropped further to ~0.4 m on August 17, 2021. The timing of these rapid water depth changes matches the timing of buoy location changes when the anchor was dragged inshore by waves. When …

Spot1356 Black Rock, Robert C. Mahon, Elizabeth J. Trower, Benjamin P. Smith, Tyler A. Lincoln, Juliana Olsen-Valdez, John S. Magyar, Cedric J. Hagen

2D Wave Spectral Data, South Arm, Great Salt Lake, Utah

Data in this folder are produced by a SoFarOcean Spotter wave buoy deployed along the south arm of the Great Salt Lake, near Antelope Island State Park from the period of July 13, 2021 through June 28, 2022, in relatively shallow water, approximately 1.6m.

Spot1356 Black Rock Derived Data, Robert C. Mahon, Elizabeth J. Trower, Benjamin P. Smith, Tyler A. Lincoln, Juliana Olsen-Valdez, John S. Magyar, Cedric J. Hagen

2D Wave Spectral Data, South Arm, Great Salt Lake, Utah

Data in this folder are produced by a SoFarOcean Spotter wave buoy deployed along the south arm of the Great Salt Lake, near Antelope Island State Park from the period of July 13, 2021 through June 28, 2022, in relatively shallow water, approximately 1.6m.

Multiple Sequence Alignment Guided By Clam, Emily Light

Senior Honors Projects

For my honors project, I am continuing my research with my academic advisor, Dr. Daniels on creating an approach to the Multiple Sequence Alignment problem in the Rust programming language. This approach will be attached to Dr. Daniels’ CLAM (Clustered Learning for Approximate Manifolds) to enable it to globally and locally align DNA sequences. This research was divided into three separate parts: building the algorithms, implementing them into CLAM’s metric, and measuring and improving the performance of the algorithms. This project includes two separate but related algorithms; Needleman-Wunsch algorithm and the Smith-Waterman algorithm.

The Needleman-Wunsch algorithm takes in two DNA …