Physical Sciences and Mathematics Commons^™

Abiotic Stress And Anthocyanins Biosynthesis In Arabidopsis Thaliana, Carolanne Bekus

Student Scholar Showcase

Crops and farmers today are facing unprecedented challenges due to the changing environment. The plants of the future need to be hardy to survive harsh environmental conditions such as increased temperature, and prolonged droughts. It is imperative to understand the mechanisms plants employ to protect themselves under these types of stresses. Anthocyanins are pigments of the flavonoid subclass produced by plants. They impart red to purple color to flowers, fruits, and seeds. They also have antioxidant properties and they contribute to stress tolerance in plants. They are understood to be produced under abiotic stresses in order to protect the plant. …

An Anatomical And Functional Analysis Of Digital Arteries, Katie Highsmith

Student Scholar Showcase

Blood flow to the tissue of the hands and digits is efficiently regulated by vasoconstriction and vasodilation. Through a series of cadaveric dissection, we examined arteries in the hands and digits, including ulnar artery, radial artery, palmar arteries, and digital arteries, for their distribution (branching) patterns and morphological parameters (e.g., thickness, length between branches, external and internal diameters). Using data directly collected from three female cadavers as input variables to our mathematical model, we simulated vasoconstriction (-20% and -10% diameter) and vasodilation (+10% and +20 diameter) to evaluate the extent of changes in blood volume and flow within the arteries. …

Evaluating The Scalability Of Graphene Synthesis, Evan Dexter

Scholar Week 2016 - present

Graphene is a new material, first isolated in 2004, consisting of one to a few atomic layers of carbon in a lattice sheet structure. Graphene has high tensile strength, high surface area, very low electrical resistance, and various other special properties that make it an excellent material for use in emerging technologies in the categories of electrical components, energy systems, and high strength applications. The production scale of graphene sheets and its variations is currently limited to laboratory use, with a great amount of current research going into the development of manufacturing techniques of the material. I conducted experiments to …

Mobilization Of Calcium Across Mineralized Tissues In Yellow Perch, Perca Flavescens, Taylor Bopp

Student Scholar Showcase

Bones in many higher teleost fish, such as percids and centrarchids, lack osteocytes that function as both chemo- and mechano-sensors, and thus, are not actively involved in homeostasis of blood calcium level. Nonetheless, the vertebrae of yellow perch, Perca flavescens (P. flavescens), living in darker and low calcium (Ca) water, have demonstrated adaptive modeling and remodeling of vertebrae to be more mineralized and thus enhance transmission of the axial muscle torque into the thrust force for the C-start predator escape behavior. The prey-predator interaction is expected to occur at closer range between prey fish and predator fish in …

3d Procedural Maze & Cave Generation, Jacob Sharp

Student Scholar Showcase

The goal of this project is to generate a maze or cave procedurally so that a player may be able to explore infinitely without a reoccurring pattern. The project also utilizes Virtual Reality (VR); the user will be able to put on a VR Headset and become more immersed in a procedural environment. One of the challenges that needed to be overcome was simple random number generators did not generate natural looking worlds. Introducing VR to the project created the additional challenge of preventing the user from becoming motion sick. These challenges were both addressed through many hours of research …

Autonomous Watercraft Simulation And Programming, Nicholas J. Savino

Student Scholar Showcase

Automation of various modes of transportation is thought to make travel more safe and efficient. Over the past several decades, advances to semi-autonomous and autonomous vehicles have led to advanced autopilot systems on planes and boats, and an increasing popularity of self-driving cars. We predicted the motion of an autonomous vehicle using simulations in Python. The simulation models the motion of a small scale watercraft, which can then be built and programmed using an Arduino Microcontroller. We examined different control methods for a simulated rescue craft to reach a target. We also examined the effects of different factors, such as …

Mathematical Modeling: Lanchester Equations And The Zombie Apocalypse, Hailey Bauer

Student Scholar Showcase

Mathematical models are systems using mathematical concepts to explain various problems. Mathematical models examine realistic issues such as the different outcomes of wars and fictional problems such as the upcoming zombie apocalypse. The original predictor models of warfare were the Lanchester models, while the zombie apocalypse is a fictional expansion upon mathematical models for infectious diseases. In this paper, we examined and compared the basic versions of these dynamic models by analyzing each model’s set of variables, assumptions, and objectives. The basic versions of the Lanchester equations are the area aimed model and the aimed fire model. While the zombie …

Age Status Effects On Female Silk Production And Male Courtship Response In Dolomedes Scriptus, Joseph Osborne

Student Scholar Showcase

Female Dolomedes scriptus, the striped fishing spider, serve as model organisms exhibiting pheromone production as a means of chemical signaling. Previous work has shown that male fishing spiders are responsive to female silk, and preferentially court in the presence of silk from mature virgins. In our research, we hypothesized that mature females produced larger quantities of silk than penultimate females in an attempt to elicit greater male mating response. Female spiders of both age statuses were kept for two days in a gridded tank. Sub-sampling of silk lines that crossed a random portion of the grid produced results signifying …

A Chemical In Filter Paper Interferes With Trail Following Behavior In The Termite Reticulitermes Hesperus (Banks), Kathryn Vest

Student Scholar Showcase

Termites follow chemical trails. In previous experiments we dissolved and diluted chemicals in acetone to test if they elicited trail following. Each trail was a straight line across the arena drawn with 10 µl using a glass capillary (Microcaps). We noticed a minor but stable response to trails laid with pure acetone. The response could be caused by contaminated acetone or by a chemical in the filter paper (Watman #5) that lined our arena (petri dish, 10cm diameter). We could confirm that the termites respond to acetone alone. Soxkhlet extraction for 8 hours removed the signal from the filter paper. …

Group Theoretical Analysis Of Arbitrarily Large, Colored Square Grids, Brett Ehrman

Student Scholar Showcase

In this research, we examine n x n grids whose individual squares are each colored with one of k distinct colors. We seek a general formula for the number of colored grids that are distinct up to rotations, reflections, and color reversals. We examine the problem using a group theoretical approach. We define a specific group action that allows us to incorporate Burnside’s Lemma, which leads us to the desired general results

Death Arena Game, Ryan Deasy, Nick Snan, Albert Anderson, David Cole, Shahzada Aqib Gill

Student Scholar Showcase

Death Arena is a 3D first-person action shooter with a horror twist. The player has 30 seconds to collect guns and health before a monster spawns. The map will be large with indoor and outdoor play. In each round a more powerful boss spawns with minions. Our goal is to appeal to horror and action fans alike.

Effect Of Environmental Conditions On Biomass Of Symplocarpus Foetidus, Christy Lemay

Student Scholar Showcase

Symplocarpus foetidus (skunk cabbage) is an obligate wetland plant that occurs sporadically in wetlands throughout Virginia. Its life cycle is well studied with flowers budding in late January to early February through a process known as thermogenesis that heats the soil surrounding the plant. Pollination of fruits by flies and distribution of fruits/seeds through wildlife. Leaves appear in March with full growth above ground by early May. The leaves die back by July. Reproduction and distribution is sensitive to disturbance and environmental factors such as soil moisture, hydrology, and seed distribution. We collected environmental data in eight designated wetland plots …

Generating Spectra Using Pca-Based Spectral Mixture Models, Joseph S. Makarewicz, Heather D. Makarewicz

Scholar Week 2016 - present

PCA-based spectra mixture models have been created for several laboratory mixture data sets. This presentation provides examples of spectra that were generated using PCA-based spectra mixture models.

Synthesis Of Cyclopropyl Analogs Of Acetylcholine, Douglas Armstrong, Zachary Emptage

Scholar Week 2016 - present

The Ph.D. research by Douglas Armstrong was highly successful for the synthesis of the trans cyclopropyl analog of acetylcholine, but only marginally successful for the cis isomer. In recent years he has developed novel ideas as to how the synthesis of the cis isomer may be improved upon, in ways using more current methods. He has done experiments using some of those methods, and the results, although preliminary, look good.

Characteristics Of Soils Under Common Management Practices On Farms In Western Kentucky, River Dowell

Scholars Week

Characteristics of Soils under Common Management Practices

on Farms in Western Kentucky

River O. Dowell and Iin P. Handayani, Murray State University, Kentucky

ABSTRACT

Properly understanding the importance of soil properties and how they continuously change is a key to achieving sustainability in agriculture. This study was conducted to observe the changes of soil properties regarding common tillage systems in Kentucky. Undisturbed and disturbed soil samples were collected from Butler County, KY at depths of 0-7.5 cm and 7.5-15 cm from four sites representing the different management practices of conventional tillage, no-till, pasture, and woodlands. The samples were analyzed for …

Exploring A Practical Development Of Quantum Computing, Juliano A. Everett, Andrea N. Zambrano, Carlos Aguayza

Publications and Research

Tasked with describing a Quantum architecture (Superconducting loops), we additionally explored how the chosen architecture is used, developed, and how one could get started in understanding the way in which some quantum algorithms work with this architecture through Python and IBM's tools (Qiskit and IBM Q Experience).

Effect Of Locality Recognition On Aggressive Behavior In The Red Swamp Crayfish, Procambarus Clarkii, Brett K. Muramoto, Tyler Farley

Seaver College Research And Scholarly Achievement Symposium

Climate change affects habitat globally, facilitating the expansion and rapid proliferation of invasive species which damage the newly invaded ecosystem. Intraspecific aggression among an invasive species is an important focus in ecological studies because it can contribute to their overall success as invaders. The crayfish species, Procambarus clarkii, inhabits freshwater streams in the Santa Monica Mountains (Los Angeles, CA) as an aggressive invasive predator. These invasive crayfish are well known for their highly aggressive interactions with conspecifics. It has been shown that body size, temperature, sex, and level of hunger influence their levels of aggression. However, there is a …

Heterogeneous Boolean Networks With Two Totalistic Rules, Katherine Toh

UNO Student Research and Creative Activity Fair

Boolean Networks are being used to analyze models in biology, economics, social sciences, and many other areas. These models simplify the reality by assuming that each element in the network can take on only two possible values, such as ON and OFF. The node evolution is governed by its interaction with other nodes in its neighborhood, which is described mathematically by a Boolean function or rule. For simplicity reasons, many models assume that all nodes follow the same Boolean rule. However, real networks often use more than one Boolean rule and therefore are heterogeneous networks. Heterogeneous networks have not yet …

Lake Sediment Analysis At Heron Haven Nature Center, Erik Lato

UNO Student Research and Creative Activity Fair

Understanding the chemical composition of a wetland sanctuary lakebed can help us understand how recent developments may have changed the chemical composition. Due to recent dredging by the U.S. Army Corps of Engineers and previous research on water composition at Heron Haven, the goal of this project was to determine the chemical composition as a function of sediment depth. The concentration of seven different metals and nutrients were analyzed in terms of depth. The aluminum, iron, and phosphate concentrations had no real discernible concentration change as a function of depth. There is some hint of a steady increase of manganese …

Fourier Series Expansion Methods For The Heat And Wave Equations In Two And Three Dimensions On Spherical Domains, Matthew Eller

UNO Student Research and Creative Activity Fair

Description: The Fourier series expansion method is an invaluable approach to solving partial differential equations, including the heat and wave equations. For homogeneous heat and wave equations, the solution can readily be found through separation of variables and then expansion of the solution in terms of the eigenfunctions. Solutions to inhomogeneous heat and wave equations through Fourier series expansion methods were not readily available in the literature for two- and three-dimensional cases. In my previous paper, I developed an approach for solving inhomogeneous heat and wave equations on cubic domains using Fourier series expansion methods. I shall extend my …

Investigating Daily Variation In Lotic Prairie Ecosystems, Dominick Caniglia

UNO Student Research and Creative Activity Fair

The goal of this project is to investigate the hydrochemistry of the prairie stream system at Glacier Creek Preserve, namely to determine the chemical behavior as it varies over time. Past sampling revealed annual/seasonal trends, which prompted this study investigating possible changes over the course of a day. To accomplish this, water samples were taken hourly for a twelve hour period in September and November 2018, and were analyzed at the Durham Science Center. All samples were obtained at the furthest downstream site available. The main focus was to study alkalinity and dissolved mineral content. Preliminary data suggests that alkalinity …

The Effect Of Arm Swing On Countermovement Vertical Jump Performance, Arash Mohammadzadeh Gonabadi

UNO Student Research and Creative Activity Fair

Vertical jumping is one of the popular ways to evaluate ankle-knee efficiency in athletic population. Arm swing can play a crucial role in enhancing vertical jump performance. This study aimed to address the differences in kinetic and kinematic parameters during countermovement jump motion with arm swing (AS) and no arm swing (NAS). We used OpenSim to examine the efficacy of AS in reducing the impulse applied to the body and changes in range of lower limb joint angles at landing instant. We calculated the maximum vertical peak of the ground reaction force and impulse generated at landing in two different …

Design For Safety: Decreasing First Responder Health Risks Through Real-Time Bio-Sensor Alerts, Suzy Fendrick

UNO Student Research and Creative Activity Fair

The focus of this research project is using the Design Thinking process to create an informative dashboard for first responders. Design Thinking involves empathizing with the user, defining the problems to be solved, ideation, creating prototypes, and testing. This iterate process focuses on the user, resulting in the most effective product possible. The dashboard will display real-time biosensor data from sensors in the first responders’ uniforms. This project is part of a larger project with the goal of vastly improving the safety of first responders during emergency hazardous material incidents.

Estimating Variations In Metabolic Cost Within The Stride Cycle During Level And Uphill Walking, Arash Mohammadzadeh Gonabadi

UNO Student Research and Creative Activity Fair

Indirect calorimetry provides the average cost of a stride cycle and prevents from identifying which part of the gait cycle causes increased metabolic cost in patients, however, recent simulation methods allow estimating the time profile of metabolic cost within the stride cycle. In this study, we compare the estimations of the time profile of the metabolic cost of two simulation methods for level and uphill walking. We used kinematic, kinetic and electromyography data from level and uphill walking (one participant) to estimate the time profiles of metabolic cost using the muscle-level metabolic model of Umberger using electromyography and kinematic data …

Investigating Nutrient Solubility And Retention In No Till And Tilled Agricultural Soils, Dillon Klein

UNO Student Research and Creative Activity Fair

FUSE Grant

Data Analytics Pipeline For Rna Structure Analysis Via Shape, Quinn Nelson

UNO Student Research and Creative Activity Fair

Coxsackievirus B3 (CVB3) is a cardiovirulent enterovirus from the family Picornaviridae. The RNA genome houses an internal ribosome entry site (IRES) in the 5’ untranslated region (5’UTR) that enables cap-independent translation. Ample evidence suggests that the structure of the 5’UTR is a critical element for virulence. We probe RNA structure in solution using base-specific modifying agents such as dimethyl sulfate as well as backbone targeting agents such as N-methylisatoic anhydride used in Selective 2’-Hydroxyl Acylation Analyzed by Primer Extension (SHAPE). We have developed a pipeline that merges and evaluates base-specific and SHAPE data together with statistical analyses that provides confidence …

Synthesis Of A Sulfur Variant For Treatment Of Trypanosomiasis, Carlos Vera-Esquivel

UNO Student Research and Creative Activity Fair

Previous work in our lab has found diphenyl ether benzylamines showed a successful response with a micromolar concentration of our lead compound to treat the deadly Trypanosamiosis rhodesience. Furthermore, mammalian cell lines saw promising resistance towards damages. The goal of this study was to synthesize a diphenyl thio benzylamine variant. This variant was more active toward T. b. rhodesience but showed more toxicity to both rat 10 (IC₅₀ mM) and human cell lines (HFF, HC-₀₄, U-₂ OS, and HEK₂₉₃). The selectivity index (ratio of toxicity to activity in the same concentration units (SI)) …

Information Literacy For Chemistry In The Real World, Alyssa H. Valcourt

Alyssa H. Valcourt

No abstract provided.

Automatic Program Rewriting In Non-Ground Answer Set Programs, Yuliya Lierler

Yuliya Lierler

No abstract provided.

Gene Co-Expression Networks Analysis Reveal Novel Molecular Endotypes In Alpha-1 Antitrypsin Deficiency, Jen-Hwa Chu, Wenlan Zang

Yale Day of Data

Rationale:Alpha-1 antitrypsin deficiency (AATD) is a genetic condition that predisposes to early onset pulmonary emphysema and airways obstruction. The exact mechanism through which AATD leads to lung disease is incompletely understood.

Objectives: To investigate the effect of AAT genotype and augmentation therapy on bronchoalveolar lavage (BAL) and peripheral blood mononuclear cells (PBMC) transcriptome, while examining the link between gene expression profiles, and clinical features of AATD.

Methods: We performed RNA-Seq on RNA extracted from BAL and PBMC on samples obtained from 89 AATD patients enrolled in the Genomic Research in Alpha-1 Antitrypsin Deficiency and Sarcoidosis (GRADS) study. Differential …