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Full-Text Articles in Medicine and Health Sciences

Interaction Pattern Of Fullerene Family With Different Forms Of Dna, Sumbul Firdaus, Mohtashim Lohani, Anupam Dhasmana, Mohd. Haneef Mar 2015

Interaction Pattern Of Fullerene Family With Different Forms Of Dna, Sumbul Firdaus, Mohtashim Lohani, Anupam Dhasmana, Mohd. Haneef

School of Medicine Publications

Fullerenes have attracted considerable attention due to their unique chemical structure and potential applications. In this study fullerenes (C20 to C180) were interacted with different forms of DNA i.e. A, B and Z-forms. And no such change in the binding score was observed with the change in the sequence of DNA. In fact, binding score increases with the increase in the molecular weight of the fullerene while interacting with A & B-form of DNA but Z-form of DNA shows no regular pattern of binding. Number of interacting base pairs increases as the molecular size of fullerene increases. And the groove …


Whole-Genome Sequencing To Understand The Genetic Architecture Of Common Gene Expression And Biomarker Phenotypes, Andrew R. Wood, Marcus A. Tuke, Mike Nalls, Dena Hernandez, J. Raphael Gibbs, Haoxiang Lin, Christopher S. Xu, Marcio Almeida, John Blangero, Joanne E. Curran, Harald H. H. Goring Mar 2015

Whole-Genome Sequencing To Understand The Genetic Architecture Of Common Gene Expression And Biomarker Phenotypes, Andrew R. Wood, Marcus A. Tuke, Mike Nalls, Dena Hernandez, J. Raphael Gibbs, Haoxiang Lin, Christopher S. Xu, Marcio Almeida, John Blangero, Joanne E. Curran, Harald H. H. Goring

School of Medicine Publications

Initial results from sequencing studies suggest that there are relatively few low-frequency (<5%) variants associated with large effects on common phenotypes. We performed low-pass whole-genome sequencing in 680 individuals from the InCHIANTI study to test two primary hypotheses: (i) that sequencing would detect single low-frequency–large effect variants that explained similar amounts of phenotypic variance as single common variants, and (ii) that some common variant associations could be explained by low-frequency variants. We tested two sets of disease-related common phenotypes for which we had statistical power to detect large numbers of common variant–common phenotype associations—11 132 cis-gene expression traits in 450 individuals and 93 circulating biomarkers in all 680 individuals. From a total of 11 657 229 high-quality variants of which 6 129 221 and 5 528 008 were common and low frequency (<5%), respectively, low frequency–large effect associations comprised 7% of detectable cis-gene expression traits [89 of 1314 cis-eQTLs at P < 1 × 10−06 (false discovery rate ∼5%)] and one of eight biomarker associations at P < 8 × 10−10. Very few (30 of 1232; 2%) common variant associations were fully explained by low-frequency variants. Our data show that whole-genome sequencing can …


Subclinical Atherosclerosis And Obesity Phenotypes Among Mexican Americans, Susan T. Laing, Beverly Smulevitz, Kristina Vatcheva, Mohammad H. Rahbar, Belinda M. Reininger, David D. Mcpherson, Joseph B. Mccormick, Susan P. Fisher-Hoch Mar 2015

Subclinical Atherosclerosis And Obesity Phenotypes Among Mexican Americans, Susan T. Laing, Beverly Smulevitz, Kristina Vatcheva, Mohammad H. Rahbar, Belinda M. Reininger, David D. Mcpherson, Joseph B. Mccormick, Susan P. Fisher-Hoch

School of Mathematical & Statistical Sciences Faculty Publications

Background

Data on the influence of obesity on atherosclerosis in Hispanics are inconsistent, possibly related to varying cardiometabolic risk among obese individuals. We aimed to determine the association of obesity and cardiometabolic risk with subclinical atherosclerosis in Mexican‐Americans.

Methods and Results

Participants (n=503) were drawn from the Cameron County Hispanic Cohort. Metabolic health was defined as <2 of the following: blood pressure ≥130/85; triglyceride ≥150 mg/dL; high‐density lipoprotein cholesterol <40 mg/dL (men) or <50 mg/dL (women); fasting glucose ≥100 mg/dL; homeostasis model assessment of insulin resistance value >5.13; or high‐sensitivity C‐reactive protein >3 mg/L. Carotid intima media thickness (cIMT) was measured. A high proportion of participants (77.8%) were metabolically unhealthy; they were more likely to be male, older, with fewer years of education, and less likely to meet daily recommendations regarding …


An Epigenetic Map Of Age-Associated Autosomal Loci In Northern European Families At High Risk For The Metabolic Syndrome, Omar Ali, Diana Cerjak, Jack W. Kent, Roland James, John Blangero, Melanie A. Carless, Yi Zhang Feb 2015

An Epigenetic Map Of Age-Associated Autosomal Loci In Northern European Families At High Risk For The Metabolic Syndrome, Omar Ali, Diana Cerjak, Jack W. Kent, Roland James, John Blangero, Melanie A. Carless, Yi Zhang

School of Medicine Publications

Background: The prevalence of chronic diseases such as cancer, type 2 diabetes, metabolic syndrome (MetS), and cardiovascular disease increases with age in all populations. Epigenetic features are hypothesized to play important roles in the pathophysiology of age-associated diseases, but a map of these markers is lacking. We searched for genome-wide age-associated methylation signatures in peripheral blood of individuals at high risks for MetS by profiling 485,000 CpG sites in 192 individuals of Northern European ancestry using the Illumina HM450 array. Subjects (ages 6-85 years) were part of seven extended families, and 73% of adults and 32% of children were overweight …


New Genetic Loci Link Adipose And Insulin Biology To Body Fat Distribution, D. Shungin, T. W. Winkler, D. C. Croteau-Chonka, T. Ferreira, A. E. Locke, R. Mägi, R. J. Strawbridge, T. H. Pers, K. Fischer, John Blangero Feb 2015

New Genetic Loci Link Adipose And Insulin Biology To Body Fat Distribution, D. Shungin, T. W. Winkler, D. C. Croteau-Chonka, T. Ferreira, A. E. Locke, R. Mägi, R. J. Strawbridge, T. H. Pers, K. Fischer, John Blangero

School of Medicine Publications

Body fat distribution is a heritable trait and a well-established predictor of adverse metabolic outcomes, independent of overall adiposity. To increase our understanding of the genetic basis of body fat distribution and its molecular links to cardiometabolic traits, here we conduct genome-wide association meta-analyses of traits related to waist and hip circumferences in up to 224,459 individuals. We identify 49 loci (33 new) associated with waist-to-hip ratio adjusted for body mass index (BMI), and an additional 19 loci newly associated with related waist and hip circumference measures (P < 5 × 10−8). In total, 20 of the 49 waist-to-hip ratio adjusted for BMI loci show significant sexual dimorphism, 19 of which display a stronger effect in women. The identified loci were enriched for genes expressed in adipose tissue and for putative regulatory elements in adipocytes. Pathway analyses implicated adipogenesis, angiogenesis, transcriptional regulation and insulin resistance as processes affecting fat distribution, providing insight into potential pathophysiological mechanisms.


Genetic Studies Of Body Mass Index Yield New Insights For Obesity Biology, A. E. Locke, B. Kahali, S. I. Berndt, A. E. Justice, T. H. Pers, F. R. Day, C. Powell, S. Vedantam, M. L. Buchkovich, John Blangero Feb 2015

Genetic Studies Of Body Mass Index Yield New Insights For Obesity Biology, A. E. Locke, B. Kahali, S. I. Berndt, A. E. Justice, T. H. Pers, F. R. Day, C. Powell, S. Vedantam, M. L. Buchkovich, John Blangero

School of Medicine Publications

Obesity is heritable and predisposes to many diseases. To understand the genetic basis of obesity better, here we conduct a genome-wide association study and Metabochip meta-analysis of body mass index (BMI), a measure commonly used to define obesity and assess adiposity, in up to 339,224 individuals. This analysis identifies 97 BMI-associated loci (P < 5 × 10-8), 56 of which are novel. Five loci demonstrate clear evidence of several independent association signals, and many loci have significant effects on other metabolic phenotypes. The 97 loci account for ∼2.7% of BMI variation, and genome-wide estimates suggest that common variation accounts for >20 % of BMI variation. Pathway analyses provide strong support for a role of the central nervous system in obesity susceptibility and implicate new genes and pathways, including those related to synaptic function, glutamate signalling, insulin secretion/action, energy metabolism, lipid biology and adipogenesis.


Closed Cases? - The Mentioning Of Medical Errors In Doctors' Memoirs, Angelika Potempa Feb 2015

Closed Cases? - The Mentioning Of Medical Errors In Doctors' Memoirs, Angelika Potempa

Philosophy Faculty Publications

The concession of errors in the pursuit of the art of medicine, where mishaps can lead to deleterious consequences is at the center of this paper. The social costs of medical errors and a professional culture with a strong tradition of self-regulation and shielding itself via a more or less permeable “Wall of Silence” make the issue not only interesting but keep it timely. The focus is on how and within what framework medical errors are admitted in the memoirs of American doctors. The times remembered reach from the 1950s and 1960s to the present.


Analysis Of Multiple Cytokine Polymorphisms In Individuals With Untreated Deep Carious Lesions Reveals Il1b (Rs1143643) As A Susceptibility Factor For Periapical Lesions Development, Alisa Dill, Ariadne Letra, Letıcia Chaves De Souza, Mamatha Yadlapati, Cláudia Cristina Biguetti, Gustavo P. Garlet, Alexandre R. Vieira, Renato Menezes Silva Feb 2015

Analysis Of Multiple Cytokine Polymorphisms In Individuals With Untreated Deep Carious Lesions Reveals Il1b (Rs1143643) As A Susceptibility Factor For Periapical Lesions Development, Alisa Dill, Ariadne Letra, Letıcia Chaves De Souza, Mamatha Yadlapati, Cláudia Cristina Biguetti, Gustavo P. Garlet, Alexandre R. Vieira, Renato Menezes Silva

School of Podiatric Medicine Publications

Introduction

It has been proposed that individual genetic predisposition may contribute to persistent apical periodontitis. Cytokines are associated with levels of inflammation and are involved in caries, pulpal, and periapical tissue destruction. We hypothesized that polymorphisms in cytokine genes may contribute to an individual’s increased susceptibility to apical tissue destruction in response to deep carious lesions.

Methods

Subjects with deep carious lesions, with or without periapical lesions (≥ 3 mm) were recruited at the University of Pittsburgh and the University of Texas at Houston. Genomic DNA samples of 316 patients were sorted into 2 groups: 136 cases with deep carious …


Preconception And Early Pregnancy Air Pollution Exposures And Risk Of Gestational Diabetes Mellitus, Candace Robledo, Pauline Mendola, Edwina H. Yeung, Tuija Männistö, Rajeshwari Sundaram, Danping Liu, Qi Ying, Seth Sherman, Katherine Grantz Feb 2015

Preconception And Early Pregnancy Air Pollution Exposures And Risk Of Gestational Diabetes Mellitus, Candace Robledo, Pauline Mendola, Edwina H. Yeung, Tuija Männistö, Rajeshwari Sundaram, Danping Liu, Qi Ying, Seth Sherman, Katherine Grantz

School of Medicine Publications

Background: Air pollution has been linked to gestational diabetes mellitus (GDM) but no studies have evaluated impact of preconception and early pregnancy air pollution exposures on GDM risk.

Methods: Electronic medical records provided data on 219,952 singleton deliveries to mothers with (n=11,334) and without GDM (n=208,618). Average maternal exposures to particulate matter (PM) ≤ 2.5μm (PM2.5) and PM2.5 constituents, PM ≤ 10μm (PM10), nitrogen oxides (NOx), carbon monoxide, sulfur dioxide (SO2) and ozone (O3) were estimated for the 3-month preconception window, first trimester, and gestational weeks 1-24 based on modified Community Multiscale Air Quality models for delivery hospital referral regions. …


Comprehensive Assessment Of The Disputed Ret Y791f Variant Shows No Association With Medullary Thyroid Carcinoma Susceptibility, Rodrigo A. Toledo, Roxanne Hatakana, Delmar M. Lourenço, Susan C. Lindsey, Cleber P. Camacho, Marcio A. Almeida, José V. Lima, Tomoko Sekiya, Elena Garralda, John Blangero Feb 2015

Comprehensive Assessment Of The Disputed Ret Y791f Variant Shows No Association With Medullary Thyroid Carcinoma Susceptibility, Rodrigo A. Toledo, Roxanne Hatakana, Delmar M. Lourenço, Susan C. Lindsey, Cleber P. Camacho, Marcio A. Almeida, José V. Lima, Tomoko Sekiya, Elena Garralda, John Blangero

School of Medicine Publications

Accurate interpretation of germline mutations of the rearranged during transfection (RET) proto-oncogene is vital for the proper recommendation of preventive thyroidectomy in medullary thyroid carcinoma (MTC)-prone carriers. To gain information regarding the most disputed variant of RET, ATA-A Y791F, we sequenced blood DNA samples from a cohort of 2904 cancer-free elderly individuals (1261 via Sanger sequencing and 1643 via whole-exome/genome sequencing). We also accessed the exome sequences of an additional 8069 individuals from non-cancer-related laboratories and public databanks as well as genetic results from the Catalogue of Somatic Mutations in Cancer (COSMIC) project. The mean allelic frequency observed in the …


Pleiotropic Locus For Emotion Recognition And Amygdala Volume Identified Using Univariate And Bivariate Linkage, Emma E.M. Knowles, Reese Mckay, Jack W. Kent, Emma Sprooten, Melanie A. Carless, Joanne E. Curran, Marcio A. Almeida, Thomas D. Dyer, Harald H.H. Göring, Ravi Duggirala, John Blangero Feb 2015

Pleiotropic Locus For Emotion Recognition And Amygdala Volume Identified Using Univariate And Bivariate Linkage, Emma E.M. Knowles, Reese Mckay, Jack W. Kent, Emma Sprooten, Melanie A. Carless, Joanne E. Curran, Marcio A. Almeida, Thomas D. Dyer, Harald H.H. Göring, Ravi Duggirala, John Blangero

School of Medicine Publications

Objective: The role of the amygdala in emotion recognition is well established, and amygdala volume and emotion recognition performance have each been shown separately to be highly heritable traits, but the potential role of common genetic influences on both traits has not been explored. The authors investigated the pleiotropic influences of amygdala volume and emotion recognition performance. Method: In a sample of randomly selected extended pedigrees (N=858), the authors used a combination of univariate and bivariate linkage to investigate pleiotropy between amygdala volume and emotion recognition performance and followed up with association analysis. Results: The authors found a pleiotropic region …


Identification And Functional Characterization Of G6pc2 Coding Variants Influencing Glycemic Traits Define An Effector Transcript At The G6pc2-Abcb11 Locus, Anubha Mahajan, Xueling Sim, Hui Jin Ng, Alisa Manning, Manuel A. Rivas, Heather M. Highland, Adam E. Locke, Niels Grarup, Hae Kyung Im, John Blangero, Joanne E. Curran Jan 2015

Identification And Functional Characterization Of G6pc2 Coding Variants Influencing Glycemic Traits Define An Effector Transcript At The G6pc2-Abcb11 Locus, Anubha Mahajan, Xueling Sim, Hui Jin Ng, Alisa Manning, Manuel A. Rivas, Heather M. Highland, Adam E. Locke, Niels Grarup, Hae Kyung Im, John Blangero, Joanne E. Curran

School of Medicine Publications

Genome wide association studies (GWAS) for fasting glucose (FG) and insulin (FI) have identified common variant signals which explain 4.8% and 1.2% of trait variance, respectively. It is hypothesized that low-frequency and rare variants could contribute substantially to unexplained genetic variance. To test this, we analyzed exome-array data from up to 33,231 non-diabetic individuals of European ancestry. We found exome-wide significant (P<5×10-7) evidence for two loci not previously highlighted by common variant GWAS: GLP1R (p.Ala316Thr, minor allele frequency (MAF)=1.5%) influencing FG levels, and URB2 (p.Glu594Val, MAF = 0.1%) influencing FI levels. Coding variant associations can highlight potential effector genes at (non-coding) GWAS signals. At the G6PC2/ABCB11 locus, we identified multiple coding …


Statistical Modeling Of Microrna Expression With Human Cancers, Ke-Sheng Wang, Yue Pan, Chun Xu Jan 2015

Statistical Modeling Of Microrna Expression With Human Cancers, Ke-Sheng Wang, Yue Pan, Chun Xu

Health & Biomedical Sciences Faculty Publications

MicroRNAs (miRNAs) are small non-coding RNAs (containing about 22 nucleotides) that regulate gene expression. MiRNAs are involved in many different biological processes such as cell proliferation, differentiation, apoptosis, fat metabolism, and human cancer genes; while miRNAs may function as candidates for diagnostic and prognostic biomarkers and predictors of drug response. This paper emphasizes the statistical methods in the analysis of the associations of miRNA gene expression with human cancers and related clinical phenotypes: 1) simple statistical methods include chi-square test, correlation analysis, t-test and one-way ANOVA; 2) regression models include linear and logistic regression; 3) survival analysis approaches such as …


A Comparison Of Self-Acceptance Of Disability Between Thai Buddhists And American Christians, Roy K. Chen, Wilaiporn Kotbungkair, Alicia D. Brown Jan 2015

A Comparison Of Self-Acceptance Of Disability Between Thai Buddhists And American Christians, Roy K. Chen, Wilaiporn Kotbungkair, Alicia D. Brown

School of Rehabilitation Services & Counseling Faculty Publications

Having a disability can significantly change a person’s life in many aspects. Research has shown that people with disabilities collectively have diminished access and fewer opportunities to pursue education, find gainful employment, and engage in intimate relationships. Self-acceptance of disability is, therefore, critical to help build resilience, confidence, and psychological well-being in this population. The purpose of the study was to compare the self-acceptance of disability in international settings, specifically in the context of religions. The sample of the study included 98 Thai Buddhists and 95 American Christians with neuromuscular disorders. Constructs used for the study included demographic characteristics, Hope …


Curcumin: A Folklore Remedy From Kitchen On The Way To Clinic As Cancer Drug, Debasish Bandyopadhyay Jan 2015

Curcumin: A Folklore Remedy From Kitchen On The Way To Clinic As Cancer Drug, Debasish Bandyopadhyay

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

Numerous compounds are widely distributed in nature and many of these possess medicinal/biological/pharmacological activity. Curcumin, a polyphenol derived from the rhizomes (underground stems) of Curcuma longa Linn (a member of the ginger family, commonly known as turmeric) is a culinary spice and therapeutic used in India for thousands of years to induce color and flavor in food as well as to treat a wide array of diseases. The origin of turmeric as spice and folklore medicine is so old that it is lost in legend. Curcumin has many beneficial pharmacological effects which includes, but are not limited with, antimicrobial, anti-inflammatory, …


Genome-Wide Methylome Analyses Reveal Novel Epigenetic Regulation Patterns In Schizophrenia And Bipolar Disorder, Yongsheng Li, Cynthia Camarillo, Juan Xu, Tania Bedard Arana, Yun Xiao, Zheng Zhao, Hong Chen, Mercedes Ramirez, Juan Zavala, Michael A. Escamilla, Chun Xu Jan 2015

Genome-Wide Methylome Analyses Reveal Novel Epigenetic Regulation Patterns In Schizophrenia And Bipolar Disorder, Yongsheng Li, Cynthia Camarillo, Juan Xu, Tania Bedard Arana, Yun Xiao, Zheng Zhao, Hong Chen, Mercedes Ramirez, Juan Zavala, Michael A. Escamilla, Chun Xu

Health & Biomedical Sciences Faculty Publications

Schizophrenia (SZ) and bipolar disorder (BP) are complex genetic disorders. Their appearance is also likely informed by as yet only partially described epigenetic contributions. Using a sequencing-based method for genome-wide analysis, we quantitatively compared the blood DNA methylation landscapes in SZ and BP subjects to control, both in an understudied population, Hispanics along the US-Mexico border. Remarkably, we identified thousands of differentially methylated regions for SZ and BP preferentially located in promoters 3'-UTRs and 5'-UTRs of genes. Distinct patterns of aberrant methylation of promoter sequences were located surrounding transcription start sites. In these instances, aberrant methylation occurred in CpG islands …


Sex-Specific Genetic Effects In Physical Activity: Results From A Quantitative Genetic Analysis, Vincent P. Diego, Raquel Nichele De Chaves, John Blangero, Daniel Santos, Thayse Natacha Gomes, Fernanda Karina Dos Santos, Rui Garganta, Peter T. Katzmarzyk, José Ar Maia Jan 2015

Sex-Specific Genetic Effects In Physical Activity: Results From A Quantitative Genetic Analysis, Vincent P. Diego, Raquel Nichele De Chaves, John Blangero, Daniel Santos, Thayse Natacha Gomes, Fernanda Karina Dos Santos, Rui Garganta, Peter T. Katzmarzyk, José Ar Maia

School of Medicine Publications

Background: The objective of this study is to present a model to estimate sex-specific genetic effects on physical activity (PA) levels and sedentary behaviour (SB) using three generation families.

Methods: The sample consisted of 100 families covering three generations from Portugal. PA and SB were assessed via the International Physical Activity Questionnaire short form (IPAQ-SF). Sex-specific effects were assessed by genotype-by-sex interaction (GSI) models and sex-specific heritabilities. GSI effects and heterogeneity were tested in the residual environmental variance. SPSS 17 and SOLAR v. 4.1 were used in all computations.

Results: The genetic component for PA and SB domains varied from …


Experimental Approaches To Derive Cd34+ Progenitors From Human And Nonhuman Primate Embryonic Stem Cells, Qiang Shi, John L. Vandeberg Jan 2015

Experimental Approaches To Derive Cd34+ Progenitors From Human And Nonhuman Primate Embryonic Stem Cells, Qiang Shi, John L. Vandeberg

School of Medicine Publications

Traditionally, CD34 positive cells are predominantly found in the umbilical cord and bone marrow, thus are considered as hematopoietic progenitors. Increasing evidence has suggested that the CD34+ cells represent a distinct subset of cells with enhanced progenitor activity; CD34 is a general marker of progenitor cells in a variety of cell types. Because the CD34 protein shows expression early on in hematopoietic and vascular-associated tissues, CD34+ cells have enormous potential as cellular agents for research and for clinical cell transplantation. Directed differentiation of embryonic stem cells will give rise to an inexhaustible supply of CD34+ cells, creating an exciting approach …


Activation Of T-Cell Protein-Tyrosine Phosphatase Suppresses Keratinocyte Survival And Proliferation Following Uvb Irradiation, Hyunseung Lee, Liza D. Morales, Thomas J. Slaga, Dae Joon Kim Jan 2015

Activation Of T-Cell Protein-Tyrosine Phosphatase Suppresses Keratinocyte Survival And Proliferation Following Uvb Irradiation, Hyunseung Lee, Liza D. Morales, Thomas J. Slaga, Dae Joon Kim

School of Medicine Publications

Chronic exposure to UV radiation can contribute to the development of skin cancer by promoting protein-tyrosine kinase (PTK) signaling. Studies show that exposure to UV radiation increases the ligand-independent activation of PTKs and induces protein-tyrosine phosphatase (PTP) inactivation. In the present work, we report that T-cell PTP (TC-PTP) activity is stimulated during the initial response to UVB irradiation, which leads to suppression of keratinocyte cell survival and proliferation via the down-regulation of STAT3 signaling. Our results show that TC-PTP-deficient keratinocyte cell lines expressed a significantly increased level of phosphorylated STAT3 after exposure to low dose UVB. This increase corresponded with …


El Razonamiento Clínico Desde El Ciclo Básico, Una Opción De Integración En Las Ciencias Médicas, María Teresa Castañeda Licón, Hugo Esteban Rodríguez Uribe, Octelina Castillo Ruiz, Erick D. Lopez, José M. Rodriguez Jan 2015

El Razonamiento Clínico Desde El Ciclo Básico, Una Opción De Integración En Las Ciencias Médicas, María Teresa Castañeda Licón, Hugo Esteban Rodríguez Uribe, Octelina Castillo Ruiz, Erick D. Lopez, José M. Rodriguez

Health & Biomedical Sciences Faculty Publications

Fundamento: el razonamiento clínico propicia la integración de conocimientos en la formación del profesional de la salud para el desempeño adecuado de su futura labor.

Objetivo: analizar la opinión general de los estudiantes acerca de la inserción de casos clínicos en la asignatura Fisiología, para propiciar el desarrollo del razonamiento clínico desde las ciencias básicas biomédicas.

Métodos: se realizó un estudio descriptivo transversal en la Facultad de Medicina de la Universidad Autónoma de Tamaulipas. El universo estuvo constituido por los estudiantes del tercer semestre de la carrera durante el período de enero a mayo de 2013. Se seleccionó una muestra …


Bayesian Survival Analysis Of Genetic Variants In Ptprn2 Gene For Age At Onset Of Cancer, Ke-Sheng Wang, Yue Pan, Weize Wang, Chun Xu Jan 2015

Bayesian Survival Analysis Of Genetic Variants In Ptprn2 Gene For Age At Onset Of Cancer, Ke-Sheng Wang, Yue Pan, Weize Wang, Chun Xu

Health & Biomedical Sciences Faculty Publications

Background: The protein tyrosine phosphatase, receptor type, N polypeptide 2 (PTPRN2) gene may play a role in cancer; however, no study has focused on the associations of genetic variants within the PTPRN2 gene with age at onset (AAO) of cancer.

Methods: This study examined 220 single nucleotide polymorphisms (SNPs) within the PTPRN2 gene in the Marshfield sample with 716 cancer cases (any diagnosed cancer, excluding minor skin cancer) and 2,848 non-cancer controls. Multiple logistic regression model and linear regression model in PLINK software were used to examine the association of each SNP with the risk of cancer and AAO, respectively. …


The Acute Effects Of Aerobic Exercise Durations On Arterial Compliance In Recreationally Active Males, Joe Angel Lopez Jan 2015

The Acute Effects Of Aerobic Exercise Durations On Arterial Compliance In Recreationally Active Males, Joe Angel Lopez

Theses and Dissertations - UTB/UTPA

PURPOSE: The purposes of this study were to 1) examine the acute effects of different aerobic exercise durations on large (LAC) and small (SAC) arterial compliance, 2) examine the acute effects of different aerobic exercise durations on central pulse wave velocity (cPWV), peripheral pulse wave velocity (pPWV), Aortic Index (AIx), and 3) to examine the acute effects of aerobic exercise durations on hemodynamics.

METHODS: Eighteen male subjects (age= 23.4±2.0) performed a maximal aerobic stress test (Bruce protocol) in order to estimate VO2max. Participants were required to meet in the lab fasted for at least 8 hours for three …


Genetics Of Kidney Disease And Related Cardiometabolic Phenotypes In Zuni Indians: The Zuni Kidney Project, Sandra L. Laston, V. Saroja Voruganti, Karin Haack, Vallabh O. Shah, Arlene Bobelu, Jeanette Bobelu, Donica Ghahate, Antonia M. Harford, Susan S. Paine, Francesca Tentori Jan 2015

Genetics Of Kidney Disease And Related Cardiometabolic Phenotypes In Zuni Indians: The Zuni Kidney Project, Sandra L. Laston, V. Saroja Voruganti, Karin Haack, Vallabh O. Shah, Arlene Bobelu, Jeanette Bobelu, Donica Ghahate, Antonia M. Harford, Susan S. Paine, Francesca Tentori

School of Medicine Publications

The objective of this study is to identify genetic factors associated with chronic kidney disease (CKD) and related cardiometabolic phenotypes among participants of the Genetics of Kidney Disease in Zuni Indians study. The study was conducted as a community-based participatory research project in the Zuni Indians, a small endogamous tribe in rural New Mexico. We recruited 998 members from 28 extended multigenerational families, ascertained through probands with CKD who had at least one sibling with CKD. We used the Illumina Infinium Human1M-Duo version 3.0 BeadChips to type 1.1 million single nucleotide polymorphisms (SNPs). Prevalence estimates for CKD, hyperuricemia, diabetes, and …


Preconception Maternal And Paternal Exposure To Persistent Organic Pollutants And Birth Size: The Life Study, Candace A. Robledo, Edwina H. Yeung, Pauline Mendola, Rajeshwari Sundaram, Jose Maisog Jan 2015

Preconception Maternal And Paternal Exposure To Persistent Organic Pollutants And Birth Size: The Life Study, Candace A. Robledo, Edwina H. Yeung, Pauline Mendola, Rajeshwari Sundaram, Jose Maisog

School of Medicine Publications

Background: Persistent organic pollutants (POPs) are developmental toxicants, but the impact of both maternal and paternal exposures on offspring birth size is largely unexplored.

Objective: We examined associations between maternal and paternal serum concentrations of 63 POPs, comprising five major classes of pollutants, with birth size measures.

Methods: Parental serum concentrations of 9 organochlorine pesticides, 1 polybrominated biphenyl (PBB), 7 perfluoroalkyl chemicals (PFCs), 10 polybrominated diphenyl ethers (PBDEs), and 36 polychlorinated biphenyls (PCBs) were measured before conception for 234 couples. Differences in birth weight, length, head circumference, and ponderal index were estimated using multiple linear regression per 1-SD increase in …


Binding Pattern Elucidation Of Nnk And Nnal Cigarette Smoke Carcinogens With Ner Pathway Enzymes: An Onco- Informatics Study, Qazi Mohammad Sajid Jamal, Anupam Dhasmana, Mohtashim Lohani, Sumbul Firdaus, Md Yousuf Ansari, Ganesh Chandra Sahoo, Shafiul Haque Jan 2015

Binding Pattern Elucidation Of Nnk And Nnal Cigarette Smoke Carcinogens With Ner Pathway Enzymes: An Onco- Informatics Study, Qazi Mohammad Sajid Jamal, Anupam Dhasmana, Mohtashim Lohani, Sumbul Firdaus, Md Yousuf Ansari, Ganesh Chandra Sahoo, Shafiul Haque

School of Medicine Publications

Cigarette smoke derivatives like NNK (4-(Methylnitrosamino)-1-(3-pyridyl)-1-butanone) and NNAL (4-(methylnitrosamino)-1-(3-pyridyl)-1-butan-1-ol) are well-known carcinogens. We analyzed the interaction of enzymes involved in the NER (nucleotide excision repair) pathway with ligands (NNK and NNAL). Binding was characterized for the enzymes sharing equivalent or better interaction as compared to +Ve control. The highest obtained docking energy between NNK and enzymes RAD23A, CCNH, CDK7, and CETN2 were -7.13 kcal/mol, -7.27 kcal/mol, -8.05 kcal/mol and -7.58 kcal/mol respectively. Similarly the highest obtained docking energy between NNAL and enzymes RAD23A, CCNH, CDK7, and CETN2 were -7.46 kcal/mol, -7.94 kcal/mol, -7.83 kcal/mol and -7.67 kcal/mol respectively. In order …


A Retrospective Examination Of Mean Relative Telomere Length In The Tasmanian Familial Hematological Malignancies Study, Nicholas B. Blackburn, Jac C. Charlesworth, James R. Marthick, Elizabeth M. Tegg, Katherine A. Marsden, Velandai Srikanth, John Blangero, Ray M. Lowenthal, Simon J. Foote, Joanne L. Dickinson Jan 2015

A Retrospective Examination Of Mean Relative Telomere Length In The Tasmanian Familial Hematological Malignancies Study, Nicholas B. Blackburn, Jac C. Charlesworth, James R. Marthick, Elizabeth M. Tegg, Katherine A. Marsden, Velandai Srikanth, John Blangero, Ray M. Lowenthal, Simon J. Foote, Joanne L. Dickinson

School of Medicine Publications

Telomere length has a biological link to cancer, with excessive telomere shortening leading to genetic instability and resultant malignant transformation. Telomere length is heritable and genetic variants determining telomere length have been identified. Telomere biology has been implicated in the development of hematological malignancies (HMs), therefore, closer examination of telomere length in HMs may provide further insight into genetic etiology of disease development and support for telomere length as a prognostic factor in HMs. We retrospectively examined mean relative telomere length in the Tasmanian Familial Hematological Malignancies Study using a quantitative PCR method on genomic DNA from peripheral blood samples. …


Transarterial Embolization Of Renal Tumors Improves Surgical Outcomes: A Case Series, Henry Reinhart, Melhem Ghaleb, Brian R. Davis Jan 2015

Transarterial Embolization Of Renal Tumors Improves Surgical Outcomes: A Case Series, Henry Reinhart, Melhem Ghaleb, Brian R. Davis

School of Medicine Publications

Introduction

Operative treatment of renal tumors can be associated with a high rate of perioperative morbidity related to hemorrhage and injury to adjacent anatomical structures. This morbidity of solid organ surgery is especially prevalent when the lesion involves chronic inflammation or a desmoplastic reaction from a rapidly growing tumor. No consensus on the use of transarterial embolization has been fashioned as the number of prospective studies is small. This study proposes to examine the beneficial effects of selective transarterial embolization of the kidney prior to surgical resection.

Presentation of case

A retrospective case matched review was performed of consecutive nephroureterectomies …


Disruption Of Skin Stem Cell Homeostasis Following Transplacental Arsenicosis; Alleviation By Combined Intake Of Selenium And Curcumin, Shiv Poojan, Sushil Kumar, Vikas Verma, Anupam Dhasmana, Mohtashim Lohani, Mukesh K. Verma Jan 2015

Disruption Of Skin Stem Cell Homeostasis Following Transplacental Arsenicosis; Alleviation By Combined Intake Of Selenium And Curcumin, Shiv Poojan, Sushil Kumar, Vikas Verma, Anupam Dhasmana, Mohtashim Lohani, Mukesh K. Verma

School of Medicine Publications

Of late, a consirable interest has grown in literature on early development of arsenicosis and untimely death in humans after exposure to iAs in drinking water in utero or during the childhood. The mechanism of this kind of intrauterine arsenic poisoning is not known; however it is often suggested to involve stem cells. We looked into this possibility by investigating in mice the influence of chronic in utero exposure to arsenical drinking water preliminarily on multipotent adult stem cell and progenitor cell counts at the beginning of neonatal age. We found that repeated intake of 42.5 or 85ppm iAs in …


Shared Genetic Variance Between Obesity And White Matter Integrity In Mexican Americans, Elena A. Spieker, Peter Kochunov, Laura M. Rowland, Emma Sprooten, Anderson M. Winkler, Rene L. Olvera, Laura Almasy, Ravi Duggirala, Peter T. Fox, John Blangero, David C. Glahn, Joanne E. Curran Jan 2015

Shared Genetic Variance Between Obesity And White Matter Integrity In Mexican Americans, Elena A. Spieker, Peter Kochunov, Laura M. Rowland, Emma Sprooten, Anderson M. Winkler, Rene L. Olvera, Laura Almasy, Ravi Duggirala, Peter T. Fox, John Blangero, David C. Glahn, Joanne E. Curran

School of Medicine Publications

Obesity is a chronic metabolic disorder that may also lead to reduced white matter integrity, potentially due to shared genetic risk factors. Genetic correlation analyses were conducted in a large cohort of Mexican American families in San Antonio (N = 761, 58% females, ages 18–81 years; 41.3 ± 14.5) from the Genetics of Brain Structure and Function Study. Shared genetic variance was calculated between measures of adiposity [(body mass index (BMI; kg/m2) and waist circumference (WC; in)] and whole-brain and regional measurements of cerebral white matter integrity (fractional anisotropy). Whole-brain average and regional fractional anisotropy values for 10 major …


Discovering Schizophrenia Endophenotypes In Randomly Ascertained Pedigrees, David C. Glahn, Jeff T. Williams, Joanne E. Curran, Harald H. H. Goring, Thomas D. Dyer, Anderson M. Winkler, Rene L. Olvera, Ravi Duggirala, Laura Almasy, John Blangero Jan 2015

Discovering Schizophrenia Endophenotypes In Randomly Ascertained Pedigrees, David C. Glahn, Jeff T. Williams, Joanne E. Curran, Harald H. H. Goring, Thomas D. Dyer, Anderson M. Winkler, Rene L. Olvera, Ravi Duggirala, Laura Almasy, John Blangero

School of Medicine Publications

Background

Although case-control approaches are beginning to disentangle schizophrenia’s complex polygenic burden, other methods will likely be necessary to fully identify and characterize risk genes. Endophenotypes, traits genetically correlated with an illness, can help characterize the impact of risk genes by providing genetically relevant traits that are more tractable than the behavioral symptoms that classify mental illness. Here we present an analytic approach for discovering and empirically validating endophenotypes in extended pedigrees with very few affected individuals. Our approach indexes each family member’s risk as a function of shared genetic kinship with an affected individual, often referred to as the …