Plant Biology Commons^™

Sources Of Error For Ultrasonic Measurements Of Steer Compositional Traits In Grazing Studies, Glen E. Aiken, F. M. Rouquette Jr., A. H. Brown Jr.

IGC Proceedings (1977-2023)

Real-time ultrasound technology has potential use for measuring compositional traits in grazing studies. Sources of error with this application must be identified for designing experiments with adequate precision to determine treatment effects. A study was conducted to evaluate breed type (Angus x Brahman, AB; Simmental x [Angus x Brahman], SAB; Simmental x [Brahman x Hereford], SBH), initial body weight, and initial ultrasonic measures as sources of experimental error in the analyses of external fat (EF) depths and longissimus dorsi (ribeye) areas (LDA). Steers were ultrasonically scanned at the initiation and conclusion of a grazing study that examined stocking rate effects …

Grassland Management And Animal Product Quality, G. W. Sheath, J. B. Coulon, Q. A. Young

IGC Proceedings (1977-2023)

The expectations of consumers ultimately determine the specification of product quality; and grassland systems produce a wide range of animal-based products. Therefore, to provide focus, this paper deals only with food products that are destined for markets that exhibit strong discretionary choice. Quality expectations of consumers have traditionally been based on product attributes such as taste, freshness, nutritional value and appearance, but customer expectations are expanding to encompass food safety, environmental care, animal welfare and biotechnologies.

Grassland forages and their management influence the intrinsic sensory properties of food. A dairy products case study is presented, indicating that pasture species and …

Priority Setting And Funding Of Agricultural Research, M. Petit

IGC Proceedings (1977-2023)

Agricultural research funding amounts and modalities have been profoundly transformed in recent years in many countries. For instance, competitive funding has become the norm rather than the exception in most countries and funding sources have been greatly diversified. In addition, in some major countries, the private sector has become a major actor In agricultural research, both as a funder of research and as a provider research results. This poses a major challenge to public research institutions, which remain the major agricultural research actors and employers of researchers in most countries. With these changes in funding, formal procedures for research priority-setting …

The Last Continuous Grasslands On Earth: Identification And Conservation Importance, Rheinhardt Scholtz, Dirac L. Twidwell Jr

Department of Agronomy and Horticulture: Faculty Publications

Grasslands are the most threatened and least protected biome. Yet, no study has been conducted to identify the last remaining continuous grasslands on Earth. Here, we used World Wildlife Fund (WWF) and International Union for Conservation of Nature (IUCN) classifications to measure the degree of intactness remaining for the world's grassland ecoregions. This analysis revealed three findings of critical conservation importance. First, only a few large, intact grasslands remain. Second, every continent with a grassland ecoregion considered in this study contains at least one relatively intact grassland ecoregion. Third, the largest remaining continuous grasslands identified in this analysis have persisted …

Dilemma: Increase In Human Food Production Or Use Of Grasslands For Environmental And / Or Social Purposes, A. D. Meister

IGC Proceedings (1977-2023)

In the title for this paper we find three major objectives: to feed the world, sustain the environment and provide resources for social purposes, and a dilemma. Even though the word ‘dilemma’ usually implies choice between undesirable alternatives, it is obvious that the alternatives here are not undesirable. Is the dilemma then, that we can only do one at the time, or that the consequences of favouring one over the other can lead to undesirable outcomes? It is my opinion that we are talking about the latter interpretation. It is the foreclosing of options by allowing one objective to dominate …

The Development And Prospect Of Chinese Grassland Economic System, Fuzeng H.

IGC Proceedings (1977-2023)

China is a country with an old agriculture civilization of the world. The arrangement of the crop and pasture area had developed from Han and Tang dynasty. (From A.C 206.to AD 907). Chinese livestock economic had undergone the winding development for a thousand years of feudal society, however, It still belong to a phase of the loose private ownership. From 1949 when The People's Republic of China was founded, the pasture was nationalized and collective management. Since 1980s, the planned economic changed into the market economic gradually. The pasture was public ownership, but management by contract, paid utilization and unchanged …

Contextual Factors In The Management Of Common Grazing Lands: Lessons From Mongolia And Northwestern China, R. Mearns

IGC Proceedings (1977-2023)

Seen in a global perspective, pastoral development is now increasingly motivated by social and environmental objectives rather than by production- or output-orientated objectives. Attention is shifting towards a broader concern with sustainability, both of grasslands, and of the livelihoods of those who rely on them (de Haan et al, 1997, Fratkin and Mearns forthcoming). Quite how these twin sustainability objectives may be achieved in particular contexts, however, is an empirical question. Drawing on examples from a diverse range of natural grassland-based livestock production systems under economic transition in Mongolia and northwestern China, this summary paper aims to show how an …

De-Intensification Of Grasslands: Understanding The Processes To Find The Balance, K. C. Hodgkinson

IGC Proceedings (1977-2023)

There is a growing trend in Australia and other developed countries for deintensification of animal production from grasslands and for grasslands to be used for purposes other than livestock grazing. These shifts are occurring for a variety of reasons including unsustainable land management practices, environmental pollution, loss of conservation value, poor commodity prices and declining rural infra-structure and communities. In Australia, the shifts are under way in agricultural grasslands, where sown pastures occur in a matrix of semi-natural woodlands, but less so in the other three major natural grasslands that forms the arid and semi-arid rangelands.

The conversion of natural …

De-Intensification Of Grasslands: Current State And Trends, Michael Duru, Bernard Hubert

IGC Proceedings (1977-2023)

De-intensified use of grasslands, and more generally of the livestock systems they support, has been triggered by a growing sensitivity of citizens to environmental quality (nitrogen) and quality of animal products, and by the warnings addressed to political authorities by scientists about the environmental consequences of economic imbalances (decreasing biodiversity, drop in soil fertility, greenhouse effect), and in particular of food overproduction in Europe.

From an ecological standpoint, grassland de-intensification must be envisaged whenever the techniques implemented disrupt resource sustainability. The grassland resource itself may be at risk when a rate of vegetation offtake by herbivores that is incompatible with …

Chapter 018 - Caves, Janice M. Glime

Bryophyte Ecology Volume 4: Habitat and Role

Explore the contents of Bryophyte Ecology, Volume 4, Chapter 18 - Caves by clicking the links above. For the Contents section of this ebook, as well as Volumes 1 through 5, please visit the Bryophyte Ecology Main Page.

Use CTRL+F to easily search within PDF files.

Ebook sponsored by Michigan Technological University and the International Association of Bryologists.

Leveraging Herbaria Specimens: A New 3d Imaging Protocol And Analyses Of Diversity Of West Virginia Rosids, Zachary Scott Shamblin

Theses, Dissertations and Capstones

Herbaria are repositories of plant natural history, whose data can provide insights into the life histories of plant taxa over space and time. Recent initiatives to digitize herbarium data have made studies over broad geographic and taxonomic extents possible, with the ability of scientists to access data from large databases of herbaria. Most of the digitization initiatives have focused on flat 2D herbaria sheets, but herbaria also include 3D collections, such as fungi, mosses, lichens, and dry fruits. In Chapter 1 we propose an easy and cost-effective workflow that uses free photogrammetry software to produce 3D images of 3D herbaria …

The Future Of The Big Sagebrush Ecosystem: Plant Community Response To Grazing, Wildfire, And Invasive Annual Grass In A Changing Climate, Margaret Eleanor England

Theses, Dissertations and Capstones

Climate change is increasingly affecting the plant communities across the world. In the Western United States, these changes are affecting plant communities and their risk of invasive species, as well as the frequency and severity of wildfire. Big sagebrush (Artemisia tridentata Nutt.) ecosystems of the Western United States are facing threats of increasingly frequent wildfire and invasion of the annual grass cheatgrass (Bromus tectorum L.), which may be exacerbated by global climate change. Past studies have found cheatgrass to exhibit a positive feedback loop with wildfire, and climate change is expected to facilitate expansion of the cheatgrass …

Thermal Tolerances Of The Invasive Macrophyte Hydrilla Verticillata, Joshua Williams

Graduate Research Showcase

Invasive species often rapidly spread due to their ability to adapt to a wide range of habitats they can occupy and lack of competition. Hydrilla verticillata is an invasive aquatic macrophyte that has spread across the United States due to human activities. Like many aquatic plants, Hydrilla has the ability to reproduce through fragmentation of the mother plant. In this method, Hydrilla fragments are then dispersed by water current to other areas where they can settle and grow. To date, little is known about the abiotic conditions that may restrict the spread of invasive Hydrilla. However, compared to other macrophytes …

Environmental Gradients Impact Key Leaf Traits In Riparian Trees, Amanda Malone

Electronic Theses and Dissertations

Specific leaf area (SLA) reflects a plant’s carbon investment per area and relates to generalized leaf economics spectrum growth strategies (LES). To fill gaps of knowledge about intraspecific SLA variation and why it is often inconsistent with the LES, we studied the response of two riparian tree species along the urban-rural gradient in Northeastern Colorado: an invasive, nitrogen-fixer with broad tolerances and a nitrogen-limited and shade-intolerant native. Despite these differences, the two species responded similarly, apart from the response to the urban-rural gradient, in which lower nitrogen in rural areas was associated with a more conservative strategy in the native …

Dccam-Mrnet: Mixed Residual Connection Network With Dilated Convolution And Coordinate Attention Mechanism For Tomato Disease Identification, Yujian Liu, Yaowen Hu, Weiwei Cai, Guoxiong Zhou, Jialei Zhan, Liujun Li

Civil, Architectural and Environmental Engineering Faculty Research & Creative Works

Tomato is an important and fragile crop. During the course of its development, it is frequently contaminated with bacteria or viruses. Tomato leaf diseases may be detected quickly and accurately, resulting in increased productivity and quality. Because of the intricate development environment of tomatoes and their inconspicuous disease spot features and small spot area, present machine vision approaches fail to reliably recognize tomato leaves. As a result, this research proposes a novel paradigm for detecting tomato leaf disease. The INLM (integration nonlocal means) filtering algorithm, for example, decreases the interference of surrounding noise on the features. Then, utilizing ResNeXt50 as …

Fddm1 And Fddm2, Two Sgs3-Like Proteins, Function As A Complex To Affect Dna Methylation In Arabidopsis, Shengjun Li, Weilong Yang, Yunfeng Liu, Guangyong Li, Xiang Liu, Yaling Liu, James R. Alfano, Chi Zhang, Bin Yu

Center for Plant Science Innovation: Faculty Publications

DNA methylation is an important epigenetic modification required for the specific regulation of gene expression and the maintenance of genome stability in plants and animals. However, the mechanism of DNA demethylation remains largely unknown. Here, we show that two SGS3-like proteins, FACTOR OF DNA DEMETHYLATION 1 (FDDM1) and FDDM2, negatively affect the DNA methylation levels at ROS1-dependend DNA loci in Arabidopsis. FDDM1 binds dsRNAs with 50 overhangs through its XS (rice gene X and SGS3) domain and forms a heterodimer with FDDM2 through its XH (rice gene X Homology) domain. A lack of FDDM1 or FDDM2 increased DNA methylation levels …

Qteller: A Tool For Comparative Multi-Genomic Gene Expression Analysis, Margaret R. Woodhouse, Shatabdi Sen, David Schott, John L. Portwood Ii, Michael Freeling, Justin W. Walley, Carson M. Andorf, James Schnable

Center for Plant Science Innovation: Faculty Publications

Motivation: Over the last decade, RNA-Seq whole-genome sequencing has become a widely used method for measuring and understanding transcriptome-level changes in gene expression. Since RNA-Seq is relatively inexpensive, it can be used on multiple genomes to evaluate gene expression across many different conditions, tissues and cell types. Although many tools exist to map and compare RNA-Seq at the genomics level, few web-based tools are dedicated to making data generated for individual genomic analysis accessible and reusable at a gene-level scale for comparative analysis between genes, across different genomes and meta-analyses. Results: To address this challenge, we revamped the comparative gene …

A Phytobacterial Tir Domain Effector Manipulates Nad+ To Promote Virulence, Samuel Eastman, Thomas Smith, Mark A. Zaydman, Panya Kim, Samuel Martinez, Neha Damaraju, Aaron Diantonio, Jeffrey Milbrandt, Thomas Clemente, James R. Alfano, Ming Guo

Department of Agronomy and Horticulture: Faculty Publications

The Pseudomonas syringae DC3000 type III effector HopAM1 suppresses plant immunity and contains a Toll/interleukin-1 receptor (TIR) domain homologous to immunity-related TIR domains of plant nucleotide-binding leucine-rich repeat receptors that hydrolyze nicotinamide adenine dinucleotide (NAD+) and activate immunity. In vitro and in vivo assays were conducted to determine if HopAM1 hydrolyzes NAD+ and if the activity is essential for HopAM1’s suppression of plant immunity and contribution to virulence. HPLC and LC-MS were utilized to analyze metabolites produced from NAD+ by HopAM1 in vitro and in both yeast and plants. Agrobacterium-mediated transient expression and in planta inoculation assays were performed to …

Geospatial Data Trees 1981, Grace K. Attea, Ryan W. Mcewan, John L. Vankat

Data Files for Old-Growth Deciduous Forest Dynamics Archive: Hueston Woods

Location and demographic data collected for each individual tree in 1981 in Hueston Woods State Nature Preserve. These maps were digitized from the historical field maps to a GIS shapefile for each sampling year. Geographic Coordinate System: GCS_North_American_1983. Projected Coordinate System: NAD_1983_StatePlane_Ohio_South_FIPS_3402 (meters).

Predicting Munsell Color For Turfgrass Leaves, William L. Berndt, Roch E. Gaussoin

Department of Agronomy and Horticulture: Faculty Publications

Linking turfgrass color to hue, value, chroma (H V/C) in the Munsell Plant Tissue Color Book is a visual comparison process for specifying and communicating plant color. If subjectivity of visual comparison can be mitigated, then accuracy of color matching may be improved. Research was conducted to develop an algorithm predicting H V/C from CIE-xyY color (xyY) in digital images of leaves of four turfgrasses. First, value-chroma (V/C) arrays for Munsell hue groups 5Y, 2.5GY, 5GY, 7.5GY, 10GY, and 2.5G were converted to xyY. Next, chromaticity (xy) plots from each array were fitted with …

Degradation And Nitrogen Cycling In The Context Of Biodiversity-Ecosystem Function Relationships In The Inquiline Bacterial Community Of Darlingtonia Californica, Megan Teigen

Cal Poly Humboldt theses and projects

Biodiversity-ecosystem function (BEF) research aims to explain how species and their environments interact with each other. Microbial communities engage in vital biogeochemical pathways in a variety of natural ecosystems, and yet there are large knowledge gaps about the specific metabolic pathways in which they are involved. Degradation specifically contributes to nitrogen cycling globally through the breakdown of large organic nitrogen compounds into small inorganic nitrogen that is necessary for the survival of many other organisms. In this study, I focused on the degradative function of the inquiline microbial communities found within the carnivorous pitcher plant, Darlingtonia californica. Darlingtonia grows in …

Characterization Of Salt And Drought Tolerance In Sunflower (Helianthus Annuus L.), Sevgi Saylak

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Consequent to the increasing world population, food sources are needed to be increased to meet the nutritional needs. However, due to natural processes and agricultural activities, the most destructive environmental factors that limit crop production, soil salinity, and drought-exposed areas are growing. As one of the major oilseed crops, sunflower (Helianthus annuus L.), is considered to be moderately tolerant to salt and drought. Although it can grow in arid to semi-arid regions, increasing salinity and drought might adversely affect sunflower production. This study aimed to investigate several sunflower germplasms' morphological responses to salt and drought stresses. For this purpose, …

Genome-Wide Identification Of Wrky Transcription Factor Encoding Genes In Amborella Trichopoda Baill. (Amborellaceae), Bijaya Pradhan

Electronic Theses and Dissertations

WRKY transcription factors (TFs) are DNA-binding proteins, which play important roles in managing plant stresses and regulating growth and development processes. The WRKY TF family has expanded significantly through genome/gene duplications in the plant evolutionary process. Although the WRKY TFs have been identified in hundreds of plant species, they are yet to be identified in Amborella trichopoda, a species that represents the most basal group of Angiosperms. The main objectives of this study were to conduct genome-wide identification of the WRKY gene family in A. trichopoda and to assess their homologs in Angiosperms. In this study, we identified …

E. Coli Persister Cell Survival And Rhizobia Attachment To Soybean Roots, Tanim Islam

Electronic Theses and Dissertations

The theme of this thesis revolves around how bacteria respond and thrive during stress. Chapters 1-3 are about how bacteria deal with life-threatening antibiotics. Chapter 4 covers new research on how bacteria can move from a stressful individual lifestyle (free-living bacteria) to initiating a symbiotic relationship with a plant (a less stressful lifestyle). In Chapter 1, I briefly summarize the current state of knowledge in the field of antibiotic resistance and persistence. In Chapter 2, I add to this knowledge by providing new insights into several antibiotics' potency and exploring the antibiotic Eagle effect. In Chapter 3, I use pyruvate …

Plant-Pollinator Interaction Networks In Remnant And Reconstructed Palouse Prairie In Eastern Wa, Usa, Emma Hoskins

EWU Masters Thesis Collection

Ecological restoration is often focused on re-establishing native plant communities, without considering the larger ecological community, specifically pollinators, despite their being critical to native forb reproduction. Further, ecological restoration has the potential to mitigate global pollinator declines by rebuilding native ecosystems, providing pollinators with floral resources and nesting habitat. This is especially true for prairie restoration, which struggles to establish diverse, abundant native forb communities. The USDA Conservation Reserve Program State Acres for Wildlife Enhancement (CRP SAFE) Palouse Prairie Project provides funding to convert agricultural fields into native Palouse Prairie habitat for the benefit of wildlife. Due to financial and …

Role Of Seed Mixes, Biochar Soil Amendment, And The Soil Seed Bank In Improving Palouse Prairie Restoration, Kristine Snyder

EWU Masters Thesis Collection

The Palouse Prairie Ecoregion of Eastern Washington and Idaho is critically endangered. Eastern Washington University (EWU) has begun a ~120 acre campus prairie restoration; however, there is considerable uncertainty about the most effective restoration approach. Annual seeds and soil organic matter are important for succession and soil moisture, but their roles are unknown for Palouse prairie restoration. Additionally, the soil seedbank of the Palouse ecoregion is widely unknown but could provide insight into methods or species to use for restoration. My research aimed to determine the effects of seed mix diversity, annual seed addition, and soil organic matter (as biochar) …

The Role Of Nitric Oxide In Inter- And Intra- Cellular Signaling In Plant Defense, Fan Xia

Theses and Dissertations--Plant Pathology

Plants have evolved a sophisticated immune system to defend themselves against pathogens. This immune response can be triggered in response to pathogen-associated molecular patterns (PAMP) or specialized effectors that are recognized by the plant resistance (R) proteins. The latter, commonly referred to as effector-triggered immunity (ETI), is well known to induce broad-spectrum resistance throughout the plants. This phenomenon known as systemic acquired resistance (SAR) is regulated by several chemical signals including salicylic acid (SA), and free radical nitric oxide (NO) and reactive oxygen species (ROS). These signals operate in two parallel branches with NO/ROS functioning downstream of pipecolic acid (Pip) …

Diversity And Evolution Of Inflorescences In Cuscuta, Morgan Glofcheskie

Theses and Dissertations (Comprehensive)

Cuscuta (dodder) includes ca. 200 species of plant obligate stem parasites with both ecological and economical significance. Inflorescences have been historically used in Cuscuta for species descriptions and identification keys, but no comprehensive study exists to date. The main objective of this study was to survey the diversity of inflorescences, and to understand their evolution and possible form-function relationships. The inflorescence architecture of 132 Cuscuta taxa was analyzed using herbarium specimens, and eight species were grown to study their inflorescence development. Inflorescence traits were mapped into a genus phylogeny obtained from a combined analysis of nuclear ITS and plastid trnL-F …

Callery Pear Removal Experiment: Trees-Intact (Medlar Conservation Area), Margaret E. Maloney, Eric B. Borth, Grace Dietsch, Mary C. Lloyd, Ryan W. Mcewan

Five Rivers MetroParks Collaboration Data Archive

The invasive tree Callery pear (Pyrus calleryana) is problematic in open habitats in the American Midwest. We investigated the efficacy of various control techniques on P. calleryana invasion in grasslands. Treatments were applied to P. calleryana stems that were single-stemmed trees (around 7 years; n = 40 stems), and response of those stems was measured.

Callery Pear Removal Experiment: Trees-Sprouting (Stillwater Conservation Area), Margaret E. Maloney, Eric B. Borth, Grace Dietsch, Mary C. Lloyd, Ryan W. Mcewan

Five Rivers MetroParks Collaboration Data Archive

The invasive tree Callery pear (Pyrus calleryana) is problematic in open habitats in the American Midwest. We investigated the efficacy of various control techniques on P. calleryana invasion in grasslands. Treatments were applied to P. calleryana stems that had experienced mowing annually for several years and were sprouting (n = 100 stems) and response of those stems was measured.