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2022

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Articles 541 - 570 of 622

Full-Text Articles in Plant Biology

Map Based Www Tool For Recommending Forage Species, M. H. Hall, D. A. Miller, J. H. Cherney Jan 2022

Map Based Www Tool For Recommending Forage Species, M. H. Hall, D. A. Miller, J. H. Cherney

IGC Proceedings (1977-2023)

Selecting the “best” forage species or species mixture requires a knowledge and understanding of the consuming animal, soil characteristics, and forage species. The multivariate nature of the problem presents challenges to those interested in solving the practical problem of maximizing available resources. Earlier work at Cornell University resulted in a WWW-based interface that allowed the user to provide a soil type or zip code and additional management factors to initiate the species selection. This approach relies on either user knowledge of soil series or an implied relationship between zip code and soil series that may often be wrong. To improve …


Remote Sensing Application To Grassland Monitoring, Z. B. Nan Jan 2022

Remote Sensing Application To Grassland Monitoring, Z. B. Nan

IGC Proceedings (1977-2023)

Application of remote sensing to the management of grassland resources, the role this plays in developing sustainable grassland farming systems and opportunities for further development are outlined. Use of remote sensing technologies in grassland monitoring has a history of more than 30 years. Both fine- and coarse-grained remote sensing techniques are used to monitor and study grasslands. Fine-grained techniques are used to study landscape scale processes through the use of sensors providing spatial resolution of a few meters, whereas coarse-grained techniques are used to study catchment scale areas, and even entire biomes, using satellite-based sensors with a spatial resolution of …


Modelling Grassland Ecosystems, J. H. M. Thornley Jan 2022

Modelling Grassland Ecosystems, J. H. M. Thornley

IGC Proceedings (1977-2023)

In this contribution a view of the promise and difficulties of modelling grassland is given. This is largely centred around work with a grassland ecosystem simulator known as the Hurley Pasture Model.

A brief introduction sets forth possible reasons for building a large ecosystem model, and stresses the importance of modelling objectives. It is suggested that a model is de rigeur for any research programme which aims to take a firm grasp of the complex responses of grassland. Mechanistic models are required to provide the understanding needed for intelligent and flexible management of grassland, whatever the prevailing environmental or economic …


Estimating Herbage Mass In Stargrass (Cynodon Nlenfuensis Var Nlenfuensis) Using Sward Surface Height And The Rising Plate Meter, D. E. Oliveira, S. R. Medeiros, L. J. M. Aroeira, L. G. Barioni, D. P. D. Lanna Jan 2022

Estimating Herbage Mass In Stargrass (Cynodon Nlenfuensis Var Nlenfuensis) Using Sward Surface Height And The Rising Plate Meter, D. E. Oliveira, S. R. Medeiros, L. J. M. Aroeira, L. G. Barioni, D. P. D. Lanna

IGC Proceedings (1977-2023)

Estimation of herbage mass is necessary both in research and farm management. Methods for such estimations should be inexpensive, rapid and reliable. Since estimations through hand clipping are time consuming, a range of indirect methods have been developed and tested in the literature. This study had the aim of comparing precision of two indirect methods, sward surface height (SSH) and the rising plate meter (RPM), to estimate herbage mass in stargrass pastures (Cynodon nlenfuensis var. nlenfuensis). Pre-grazing measurements of SSH and RPM readings were taken and compared with the paddock herbage mass. RPM readings were converted into centimeters. Average …


Management-Intensive Grazing Impacts On Total Escherichia Coli, E. Coli O157: H7, And Antibiotic Resistance Genes In A Riparian Stream, Laura M. Rubeck, James E. Wells, Kathy Hanford, Lisa M. Durso, Walter H. Schacht, Elaine D. Berry Jan 2022

Management-Intensive Grazing Impacts On Total Escherichia Coli, E. Coli O157: H7, And Antibiotic Resistance Genes In A Riparian Stream, Laura M. Rubeck, James E. Wells, Kathy Hanford, Lisa M. Durso, Walter H. Schacht, Elaine D. Berry

Department of Agronomy and Horticulture: Faculty Publications

The impacts of management-intensive grazing (MIG) of cattle on concentrations of total Escherichia coli, total suspended solids (TSS), and nitrate-nitrite nitrogen (NO3+NO2-N), and occurrence of E. coli O157:H7 and selected antibiotic resistance genes (ARGs) in stream water and/or sediments were evaluated. Cattle were grazed for twoweek periods in May in each of three years. Overall, grazing increased total E. coli in downstream water by 0.89 log10 MPN/100 mL (p < 0.0001), and downstream total E. coli concentrations were higher than upstream over all sampling intervals. Downstream TSS levels also increased (p ≤ 0.0294) during grazing. In contrast, there was …


The Analysis Of Results From Paired Paddock Comparisons, David R. Kemp, P. M. Dowling, D. L. Michalk, G. Millar Jan 2022

The Analysis Of Results From Paired Paddock Comparisons, David R. Kemp, P. M. Dowling, D. L. Michalk, G. Millar

IGC Proceedings (1977-2023)

Paired-paddock comparisons are a common way of evaluating new grassland practices at a scale more relevant to farmers. They are also being used to replace or augment designed experiments and can be the only source of information available on a practice. However, it is often uncertain if the differences between paddocks are significant. Importantly, a current trend among funding organisations is to support paddock comparisons. The need for valid procedures to compare unreplicated treatments is increasingly urgent. It is suggested that a range of tools be used to infer statistical significance from using typical error values from related studies or …


Length And Width To Estimate Dry Mass Of Panicum Maximum Cv. Tanzânia Leaves, L. G. Barioni, P. M. Santos, A. Coldebella, M. Corsi Jan 2022

Length And Width To Estimate Dry Mass Of Panicum Maximum Cv. Tanzânia Leaves, L. G. Barioni, P. M. Santos, A. Coldebella, M. Corsi

IGC Proceedings (1977-2023)

An analysis of the relationship of leaf length (LL) and leaf width (LW) with leaf dry weight (LDW) in Panicum maximum was carried out with the objective of improving estimations of tissue flow in that plant. Data was collected in a mob grazing experiment with 28 days grazing interval sampled the day before grazing in 9 grazing cycles. Regression analysis revealed highly significant effect (P < 0.001) of both LL and LW on LDW. A lack of fit test gave strong evidence of non-linear relationship of LDW with LL (p < 0.05), fitting the model 1 0 LDW = β0LLβ1 , while LW presented a linear relation with LDW. LL was a better predictor of LDW than LW. LL solely or in combination with LW produced equations with …


Bioeconomic Model For Decision-Making On Fattening Beef-Cattle, G. Ferreira, O. Cardozo, J. M. Soares De Lima Jan 2022

Bioeconomic Model For Decision-Making On Fattening Beef-Cattle, G. Ferreira, O. Cardozo, J. M. Soares De Lima

IGC Proceedings (1977-2023)

Profitability and competitiveness of agricultural systems it is closely related with the technology used. Economic and financial appraisal of investments on pasture improvements, facilities, feed and management plans, etc. are often required in order to make decisions. A bio-economic simulation model was developed in order to support decision making on beef-cattle grazing fattening. The aim of the model is to show the relationship between the technological alternative analysed in physical terms as well as financial and economic. By this way it is possible to asset and relate the bio-economic impact of the different animal and pasture management alternative technologies. Results …


Sequential Injection Analysis: A Powerful Tool For Routine Soil And Plant Laboratories, A. R. A. Nogueira, F. V. Silva, M. Y. Kamogawa, G. B. Souza, L. F. M. Ferraz Jan 2022

Sequential Injection Analysis: A Powerful Tool For Routine Soil And Plant Laboratories, A. R. A. Nogueira, F. V. Silva, M. Y. Kamogawa, G. B. Souza, L. F. M. Ferraz

IGC Proceedings (1977-2023)

Sequential injection analysis (SIA) present attractive characteristics for analyses in large scale. In SIA the analytical determination can be performed automatically reducing the number of steps usually involved in a chemical analysis. In order to demonstrate the advantages found in the implementation of a SIA procedure in a laboratory dedicated to routine analyze, the determination of volatile nitrogen in silage and soil samples has been performed. The nitrogen content was determined after NH3 on-line separation in alkaline conditions by using a gaseous diffusion or a pervaporation unit for liquid-liquid separation. An ammonium tubular selective electrode detector was used for …


A Chance-Constrained Linear Model For Beef Policy Analysis, Claudio F. Machado, S. T. Morris, C. Dake, A. Macdonald, I. M. Brookes, F. Di Croce, F. Gonzalez, N. J. Auza Jan 2022

A Chance-Constrained Linear Model For Beef Policy Analysis, Claudio F. Machado, S. T. Morris, C. Dake, A. Macdonald, I. M. Brookes, F. Di Croce, F. Gonzalez, N. J. Auza

IGC Proceedings (1977-2023)

A simple linear model to evaluate different bull beef policies (BBP) by incorporating the stochastic nature of pasture yield from a database with separate chance constraints (ChC) was developed. A 100 ha farm was used, and the model was run with five different BBP and set to different levels of pasture yield risk to maximise production.ha-1.year-1. Summer was the most risky season, and the optimum mix of policies changed at different levels of risk. Chance constraint represents an interesting and simple alternative to include pasture variation into a linear model.


Mapping Nitrogen Fixing Shrubs In Dry Unimproved Tussock Grassland, C. C. Boswell, W. L. Lowther, P. D. Espie Jan 2022

Mapping Nitrogen Fixing Shrubs In Dry Unimproved Tussock Grassland, C. C. Boswell, W. L. Lowther, P. D. Espie

IGC Proceedings (1977-2023)

Global Positioning System (GPS) was used to both map the positions of individual nitrogen-fixing shrub plants and record individual plant height and breadth dimensions, within a small catchment of dry sub-humid unimproved short tussock grassland. The distributions of different species of shrubs varied with different landscape units within the catchment. The information will provide the base data for a first approximation of the role of the shrubs in the nitrogen balance of the ecosystem, which is pivotal to the sustainability of pastoral farming in the tussock grasslands.


Repeated Measurement Analyses Of Forages In Cropping Systems, A. R. De Freitas, O. Primavesi, L. De A. Corrêa, A. C. Primavesi, E. B. Pott, A. Dos S. Mascioli Jan 2022

Repeated Measurement Analyses Of Forages In Cropping Systems, A. R. De Freitas, O. Primavesi, L. De A. Corrêa, A. C. Primavesi, E. B. Pott, A. Dos S. Mascioli

IGC Proceedings (1977-2023)

Repeated measurements (RM) are common in forage experiments. The data used in this study were accumulated ammonia losses by volatilization (N) and dry matter production (DM) of Cynodon dactylon cv. Coastcross pasture from an experiment in blocks with five levels of urea: 0, 25, 50, 100 and 200 kg of N ha-1, applied in five periods (cuttings). For N, RM were the averages of cuttings and nine days of observation. The F test for the hypothesis of no effect for Period and Level x Period interaction (DM) and for Days and Level x Days interaction was not affected …


Farmwi$E: A Flexible Decision Support Tool For Grazing Systems Management, A. D. Moore Jan 2022

Farmwi$E: A Flexible Decision Support Tool For Grazing Systems Management, A. D. Moore

IGC Proceedings (1977-2023)

CSIRO's new FarmWi$e decision support tool provides a framework that permits pasture-livestock systems and management policies of any level of complexity to be simulated. An underlying "modelling protocol" permits other simulation models to be added, further extending its domain of applicability. Management policies are specified in FarmWi$e by means of rules that govern when, whether and how management events take place. An example of the use of FarmWi$e to study lamb production is given.


Sward Height; Visual Estimate Compared With Plate Meter Height, W. B. Bryan, E. C. Prigge, E. L. Nestor, O. J. Gekara, M. A. Schettini Jan 2022

Sward Height; Visual Estimate Compared With Plate Meter Height, W. B. Bryan, E. C. Prigge, E. L. Nestor, O. J. Gekara, M. A. Schettini

IGC Proceedings (1977-2023)

Sward height (SH) is widely used in pasture research and farm practice to evaluate pasture conditions. Visual estimates can take less time than actual measurements. This study compared visually estimated SH, of continuously grazed cool-season permanent pasture with plate meter height. Weekly estimates, by five people, were made on 12, 0.75 to 1 ha fields, grazed at two intensities. Paired data (visual estimate and plate meter height) were subjected to variance and covariance analyses and prediction equations were developed. Average visual height accounted for 86% of the variability in plate meter height. Inclusion of other sources of variability in the …


Sources Of Error For Ultrasonic Measurements Of Steer Compositional Traits In Grazing Studies, Glen E. Aiken, F. M. Rouquette Jr., A. H. Brown Jr. Jan 2022

Sources Of Error For Ultrasonic Measurements Of Steer Compositional Traits In Grazing Studies, Glen E. Aiken, F. M. Rouquette Jr., A. H. Brown Jr.

IGC Proceedings (1977-2023)

Real-time ultrasound technology has potential use for measuring compositional traits in grazing studies. Sources of error with this application must be identified for designing experiments with adequate precision to determine treatment effects. A study was conducted to evaluate breed type (Angus x Brahman, AB; Simmental x [Angus x Brahman], SAB; Simmental x [Brahman x Hereford], SBH), initial body weight, and initial ultrasonic measures as sources of experimental error in the analyses of external fat (EF) depths and longissimus dorsi (ribeye) areas (LDA). Steers were ultrasonically scanned at the initiation and conclusion of a grazing study that examined stocking rate effects …


Grassland Management And Animal Product Quality, G. W. Sheath, J. B. Coulon, Q. A. Young Jan 2022

Grassland Management And Animal Product Quality, G. W. Sheath, J. B. Coulon, Q. A. Young

IGC Proceedings (1977-2023)

The expectations of consumers ultimately determine the specification of product quality; and grassland systems produce a wide range of animal-based products. Therefore, to provide focus, this paper deals only with food products that are destined for markets that exhibit strong discretionary choice. Quality expectations of consumers have traditionally been based on product attributes such as taste, freshness, nutritional value and appearance, but customer expectations are expanding to encompass food safety, environmental care, animal welfare and biotechnologies.

Grassland forages and their management influence the intrinsic sensory properties of food. A dairy products case study is presented, indicating that pasture species and …


Priority Setting And Funding Of Agricultural Research, M. Petit Jan 2022

Priority Setting And Funding Of Agricultural Research, M. Petit

IGC Proceedings (1977-2023)

Agricultural research funding amounts and modalities have been profoundly transformed in recent years in many countries. For instance, competitive funding has become the norm rather than the exception in most countries and funding sources have been greatly diversified. In addition, in some major countries, the private sector has become a major actor In agricultural research, both as a funder of research and as a provider research results. This poses a major challenge to public research institutions, which remain the major agricultural research actors and employers of researchers in most countries. With these changes in funding, formal procedures for research priority-setting …


The Last Continuous Grasslands On Earth: Identification And Conservation Importance, Rheinhardt Scholtz, Dirac L. Twidwell Jr Jan 2022

The Last Continuous Grasslands On Earth: Identification And Conservation Importance, Rheinhardt Scholtz, Dirac L. Twidwell Jr

Department of Agronomy and Horticulture: Faculty Publications

Grasslands are the most threatened and least protected biome. Yet, no study has been conducted to identify the last remaining continuous grasslands on Earth. Here, we used World Wildlife Fund (WWF) and International Union for Conservation of Nature (IUCN) classifications to measure the degree of intactness remaining for the world's grassland ecoregions. This analysis revealed three findings of critical conservation importance. First, only a few large, intact grasslands remain. Second, every continent with a grassland ecoregion considered in this study contains at least one relatively intact grassland ecoregion. Third, the largest remaining continuous grasslands identified in this analysis have persisted …


Dilemma: Increase In Human Food Production Or Use Of Grasslands For Environmental And / Or Social Purposes, A. D. Meister Jan 2022

Dilemma: Increase In Human Food Production Or Use Of Grasslands For Environmental And / Or Social Purposes, A. D. Meister

IGC Proceedings (1977-2023)

In the title for this paper we find three major objectives: to feed the world, sustain the environment and provide resources for social purposes, and a dilemma. Even though the word ‘dilemma’ usually implies choice between undesirable alternatives, it is obvious that the alternatives here are not undesirable. Is the dilemma then, that we can only do one at the time, or that the consequences of favouring one over the other can lead to undesirable outcomes? It is my opinion that we are talking about the latter interpretation. It is the foreclosing of options by allowing one objective to dominate …


The Development And Prospect Of Chinese Grassland Economic System, Fuzeng H. Jan 2022

The Development And Prospect Of Chinese Grassland Economic System, Fuzeng H.

IGC Proceedings (1977-2023)

China is a country with an old agriculture civilization of the world. The arrangement of the crop and pasture area had developed from Han and Tang dynasty. (From A.C 206.to AD 907). Chinese livestock economic had undergone the winding development for a thousand years of feudal society, however, It still belong to a phase of the loose private ownership. From 1949 when The People's Republic of China was founded, the pasture was nationalized and collective management. Since 1980s, the planned economic changed into the market economic gradually. The pasture was public ownership, but management by contract, paid utilization and unchanged …


Contextual Factors In The Management Of Common Grazing Lands: Lessons From Mongolia And Northwestern China, R. Mearns Jan 2022

Contextual Factors In The Management Of Common Grazing Lands: Lessons From Mongolia And Northwestern China, R. Mearns

IGC Proceedings (1977-2023)

Seen in a global perspective, pastoral development is now increasingly motivated by social and environmental objectives rather than by production- or output-orientated objectives. Attention is shifting towards a broader concern with sustainability, both of grasslands, and of the livelihoods of those who rely on them (de Haan et al, 1997, Fratkin and Mearns forthcoming). Quite how these twin sustainability objectives may be achieved in particular contexts, however, is an empirical question. Drawing on examples from a diverse range of natural grassland-based livestock production systems under economic transition in Mongolia and northwestern China, this summary paper aims to show how an …


De-Intensification Of Grasslands: Understanding The Processes To Find The Balance, K. C. Hodgkinson Jan 2022

De-Intensification Of Grasslands: Understanding The Processes To Find The Balance, K. C. Hodgkinson

IGC Proceedings (1977-2023)

There is a growing trend in Australia and other developed countries for deintensification of animal production from grasslands and for grasslands to be used for purposes other than livestock grazing. These shifts are occurring for a variety of reasons including unsustainable land management practices, environmental pollution, loss of conservation value, poor commodity prices and declining rural infra-structure and communities. In Australia, the shifts are under way in agricultural grasslands, where sown pastures occur in a matrix of semi-natural woodlands, but less so in the other three major natural grasslands that forms the arid and semi-arid rangelands.

The conversion of natural …


De-Intensification Of Grasslands: Current State And Trends, Michael Duru, Bernard Hubert Jan 2022

De-Intensification Of Grasslands: Current State And Trends, Michael Duru, Bernard Hubert

IGC Proceedings (1977-2023)

De-intensified use of grasslands, and more generally of the livestock systems they support, has been triggered by a growing sensitivity of citizens to environmental quality (nitrogen) and quality of animal products, and by the warnings addressed to political authorities by scientists about the environmental consequences of economic imbalances (decreasing biodiversity, drop in soil fertility, greenhouse effect), and in particular of food overproduction in Europe.

From an ecological standpoint, grassland de-intensification must be envisaged whenever the techniques implemented disrupt resource sustainability. The grassland resource itself may be at risk when a rate of vegetation offtake by herbivores that is incompatible with …


Chapter 018 - Caves, Janice M. Glime Jan 2022

Chapter 018 - Caves, Janice M. Glime

Bryophyte Ecology Volume 4: Habitat and Role

Explore the contents of Bryophyte Ecology, Volume 4, Chapter 18 - Caves by clicking the links above. For the Contents section of this ebook, as well as Volumes 1 through 5, please visit the Bryophyte Ecology Main Page.

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Ebook sponsored by Michigan Technological University and the International Association of Bryologists.


Leveraging Herbaria Specimens: A New 3d Imaging Protocol And Analyses Of Diversity Of West Virginia Rosids, Zachary Scott Shamblin Jan 2022

Leveraging Herbaria Specimens: A New 3d Imaging Protocol And Analyses Of Diversity Of West Virginia Rosids, Zachary Scott Shamblin

Theses, Dissertations and Capstones

Herbaria are repositories of plant natural history, whose data can provide insights into the life histories of plant taxa over space and time. Recent initiatives to digitize herbarium data have made studies over broad geographic and taxonomic extents possible, with the ability of scientists to access data from large databases of herbaria. Most of the digitization initiatives have focused on flat 2D herbaria sheets, but herbaria also include 3D collections, such as fungi, mosses, lichens, and dry fruits. In Chapter 1 we propose an easy and cost-effective workflow that uses free photogrammetry software to produce 3D images of 3D herbaria …


The Future Of The Big Sagebrush Ecosystem: Plant Community Response To Grazing, Wildfire, And Invasive Annual Grass In A Changing Climate, Margaret Eleanor England Jan 2022

The Future Of The Big Sagebrush Ecosystem: Plant Community Response To Grazing, Wildfire, And Invasive Annual Grass In A Changing Climate, Margaret Eleanor England

Theses, Dissertations and Capstones

Climate change is increasingly affecting the plant communities across the world. In the Western United States, these changes are affecting plant communities and their risk of invasive species, as well as the frequency and severity of wildfire. Big sagebrush (Artemisia tridentata Nutt.) ecosystems of the Western United States are facing threats of increasingly frequent wildfire and invasion of the annual grass cheatgrass (Bromus tectorum L.), which may be exacerbated by global climate change. Past studies have found cheatgrass to exhibit a positive feedback loop with wildfire, and climate change is expected to facilitate expansion of the cheatgrass …


Thermal Tolerances Of The Invasive Macrophyte Hydrilla Verticillata, Joshua Williams Jan 2022

Thermal Tolerances Of The Invasive Macrophyte Hydrilla Verticillata, Joshua Williams

Graduate Research Showcase

Invasive species often rapidly spread due to their ability to adapt to a wide range of habitats they can occupy and lack of competition. Hydrilla verticillata is an invasive aquatic macrophyte that has spread across the United States due to human activities. Like many aquatic plants, Hydrilla has the ability to reproduce through fragmentation of the mother plant. In this method, Hydrilla fragments are then dispersed by water current to other areas where they can settle and grow. To date, little is known about the abiotic conditions that may restrict the spread of invasive Hydrilla. However, compared to other macrophytes …


Environmental Gradients Impact Key Leaf Traits In Riparian Trees, Amanda Malone Jan 2022

Environmental Gradients Impact Key Leaf Traits In Riparian Trees, Amanda Malone

Electronic Theses and Dissertations

Specific leaf area (SLA) reflects a plant’s carbon investment per area and relates to generalized leaf economics spectrum growth strategies (LES). To fill gaps of knowledge about intraspecific SLA variation and why it is often inconsistent with the LES, we studied the response of two riparian tree species along the urban-rural gradient in Northeastern Colorado: an invasive, nitrogen-fixer with broad tolerances and a nitrogen-limited and shade-intolerant native. Despite these differences, the two species responded similarly, apart from the response to the urban-rural gradient, in which lower nitrogen in rural areas was associated with a more conservative strategy in the native …


Fddm1 And Fddm2, Two Sgs3-Like Proteins, Function As A Complex To Affect Dna Methylation In Arabidopsis, Shengjun Li, Weilong Yang, Yunfeng Liu, Guangyong Li, Xiang Liu, Yaling Liu, James R. Alfano, Chi Zhang, Bin Yu Jan 2022

Fddm1 And Fddm2, Two Sgs3-Like Proteins, Function As A Complex To Affect Dna Methylation In Arabidopsis, Shengjun Li, Weilong Yang, Yunfeng Liu, Guangyong Li, Xiang Liu, Yaling Liu, James R. Alfano, Chi Zhang, Bin Yu

Center for Plant Science Innovation: Faculty Publications

DNA methylation is an important epigenetic modification required for the specific regulation of gene expression and the maintenance of genome stability in plants and animals. However, the mechanism of DNA demethylation remains largely unknown. Here, we show that two SGS3-like proteins, FACTOR OF DNA DEMETHYLATION 1 (FDDM1) and FDDM2, negatively affect the DNA methylation levels at ROS1-dependend DNA loci in Arabidopsis. FDDM1 binds dsRNAs with 50 overhangs through its XS (rice gene X and SGS3) domain and forms a heterodimer with FDDM2 through its XH (rice gene X Homology) domain. A lack of FDDM1 or FDDM2 increased DNA methylation levels …


Qteller: A Tool For Comparative Multi-Genomic Gene Expression Analysis, Margaret R. Woodhouse, Shatabdi Sen, David Schott, John L. Portwood Ii, Michael Freeling, Justin W. Walley, Carson M. Andorf, James Schnable Jan 2022

Qteller: A Tool For Comparative Multi-Genomic Gene Expression Analysis, Margaret R. Woodhouse, Shatabdi Sen, David Schott, John L. Portwood Ii, Michael Freeling, Justin W. Walley, Carson M. Andorf, James Schnable

Center for Plant Science Innovation: Faculty Publications

Motivation: Over the last decade, RNA-Seq whole-genome sequencing has become a widely used method for measuring and understanding transcriptome-level changes in gene expression. Since RNA-Seq is relatively inexpensive, it can be used on multiple genomes to evaluate gene expression across many different conditions, tissues and cell types. Although many tools exist to map and compare RNA-Seq at the genomics level, few web-based tools are dedicated to making data generated for individual genomic analysis accessible and reusable at a gene-level scale for comparative analysis between genes, across different genomes and meta-analyses. Results: To address this challenge, we revamped the comparative gene …