Plant Biology Commons^™

Root Hair Single Cell Type Specific Profiles Of Gene Expression And Alternative Polyadenylation Under Cadmium Stress, Jingyi Cao, Congting Ye, Guijie Hao, Carole Dabney-Smith, Arthur G. Hunt, Qingshun Q. Li

Plant and Soil Sciences Faculty Publications

Transcriptional networks are tightly controlled in plant development and stress responses. Alternative polyadenylation (APA) has been found to regulate gene expression under abiotic stress by increasing the heterogeneity at mRNA 3′-ends. Heavy metals like cadmium pollute water and soil due to mining and industry applications. Understanding how plants cope with heavy metal stress remains an interesting question. The Arabidopsis root hair was chosen as a single cell model to investigate the functional role of APA in cadmium stress response. Primary root growth inhibition and defective root hair morphotypes were observed. Poly(A) tag (PAT) libraries from single cell types, i.e., root …

Seasonal Origins Of Soil Water Used By Trees, Scott T. Allen, James W. Kirchner, Sabine Braun, Rolf T. W. Siegwolf, Gregory R. Goldsmith

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Rain recharges soil water storages and either percolates downward into aquifers and streams or is returned to the atmosphere through evapotranspiration. Although it is commonly assumed that summer rainfall recharges plant-available water during the growing season, the seasonal origins of water used by plants have not been systematically explored. We characterize the seasonal origins of waters in soils and trees by comparing their midsummer isotopic signatures (δ2H) to seasonal isotopic cycles in precipitation, using a new seasonal origin index. Across 182 Swiss forest sites, xylem water isotopic signatures show that summer rain was not the predominant water source …

Isolation And Identification Of Potential Bioinoculants Based On Phosphate Solubilizing And Plant Growth Promoting Benefits, Rachel Raths

Electronic Theses and Dissertations

Conservative models have shown that as populations rise, food production needs to double by 2050. Population increase and the green revolution have caused fertilizer inputs to increase since the 1960’s, increasing environmental issues and production costs. These intensive practices have led to degraded arable land and there has been an increase in urbanization meaning we need to make best use of the farming land that is available and ensure it is sustainable for future food production. Due to this, there has been a higher demand for research on more environmentally and economically friendly approaches to food production. Plant growth promoting …

Biogeochemical Response To Vegetation And Hydrologic Change In An Alaskan Boreal Fen Ecosystem, Danielle L. Rupp

Dissertations, Master's Theses and Master's Reports

Boreal peatlands store approximately one third of the earth’s terrestrial carbon, locked away in currently waterlogged and frozen conditions. Peatlands of boreal and arctic ecosystems are affected increasingly by shifting hydrology caused by climate change. The consequences of these relatively rapid ecosystem changes on carbon cycling between the landscape and the atmosphere could provide an amplifying feedback to climate warming. Alternatively, the advancement of terrestrial vegetation into once waterlogged soils could uptake carbon as a sink. Previous work suggests that fens will become an increasingly dominant landscape feature in the boreal. However, studies investigating fens, their response to hydrologic and …

Respon Pertumbuhan Dan Hasil Tanaman Hanjeli Pada Panen Awal Akibat Pemberian Dosis Pupuk Biosilika Dan Paklobutrazol Di Lahan Kering Jatinangor, Ruminta, Tati Nurmala, Yuyun Yuwariah, Nita Yuliani Pratiwi

Jurnal Kultivasi

Hanjeli (Coix lacryma-jobiL) merupakan salah satu tanaman pangan alternatif dan tanaman fungsional. Hanjeli belum sepenuhnya dimanfaatkan petani salah satunya karena tanaman yang cukup tinggi dan memiliki umur cukup lama. Penelitian ini bertujuan untuk mengetahui dosis pupuk biosilika dan konsentrasi paklobutrazol yang dapat memberikan pengaruh terbaik terhadap pertumbuhan dan hasil tanaman hanjeli pulut dipanen awal (matang kuning). Penelitian dilaksanakan bulan Agustus 2017-Januari 2018 di Ciparanje, Universitas Padjadjaran, Jatinangor, Sumedang. Rancangan percobaan yang digunakan adalah rancangan petak terbagi yang terdiri dari petak utama pupuk biosilika dengan dosis 0 kg/ha; 100 kg/ha; 200 kg/ha dan anak petak paklobutrazol dengan konsentrasi 0 ppm; 1250 …

Modulation Of Auxin And Cytokinin Responses By Early Steps Of The Phenylpropanoid Pathway, Jasmina Kurepa, Timothy E. Shull, Sumudu S. Karunadasa, Jan A. Smalle

Plant and Soil Sciences Faculty Publications

Background: The phenylpropanoid pathway is responsible for the synthesis of numerous compounds important for plant growth and responses to the environment. In the first committed step of phenylpropanoid biosynthesis, the enzyme phenylalanine ammonia-lyase (PAL) deaminates L-phenylalanine into trans-cinnamic acid that is then converted into p-coumaric acid by cinnamate-4-hydroxylase (C4H). Recent studies showed that the Kelch repeat F-box (KFB) protein family of ubiquitin ligases control phenylpropanoid biosynthesis by promoting the proteolysis of PAL. However, this ubiquitin ligase family, alternatively named Kiss Me Deadly (KMD), was also implicated in cytokinin signaling as it was shown to promote the degradation of …

Plant And Microbial Responses To Repeated Cu(Oh)2 Nanopesticide Exposures Under Different Fertilization Levels In An Agro-Ecosystem, Marie Simonin, Benjamin P. Colman, Weiyi Tang, Jonathan D. Judy, Steven M. Anderson, Christina M. Bergemann, Jennifer D. Rocca, Jason M. Unrine, Nicolas Cassar, Emily S. Bernhardt

Plant and Soil Sciences Faculty Publications

The environmental fate and potential impacts of nanopesticides on agroecosystems under realistic agricultural conditions are poorly understood. As a result, the benefits and risks of these novel formulations compared to the conventional products are currently unclear. Here, we examined the effects of repeated realistic exposures of the Cu(OH)₂ nanopesticide, Kocide 3000, on simulated agricultural pastureland in an outdoor mesocosm experiment over 1 year. The Kocide applications were performed alongside three different mineral fertilization levels (Ambient, Low, and High) to assess the environmental impacts of this nanopesticide under low-input or conventional farming scenarios. The effects of Kocide over time were …

The Effect Of Preflood Nitrogen And Flood Establishment Timing On Rice Development, Nitrogen Uptake And Grain Yield, Tyler Richmond

Graduate Theses and Dissertations

Urea-N fertilizer is typically applied at the 5-leaf stage to rice (Oryza sativa L.) grown in a dry-seeded, delayed-flood production system. How long the preflood-N can be delayed without adverse effects on yield potential is poorly understood. The research objective was to determine the effects of preflood-N application and flood establishment timing on aboveground-N content, 50% heading, yield components, and grain yield. Trials were established on silt loam soils at the Pine Tree Research Station (PTRS) and Rice Research and Extension Center (RREC) during 2015 and 2016. Urea-N was applied at 0, 45, 90, 135, and 180 kg N ha-1 …

Respons Pertumbuhan Dan Hasil Benih Kentang G0 Di Dataran Medium Terhadap Waktu Dan Cara Aplikasi Paklobutrazol, Nuzula Suci Azima, Anne Nuraini, Sumadi, Jajang Sauman Hamdani

Jurnal Kultivasi

Aplikasi paklobutrazol pada penanaman kentang di dataran medium dapat mengurangi sintesis giberelin yang menyebabkan penurunan hasil kentang. Efektifitas paklobutrazol tidak hanya dipengaruhi oleh konsentrasi, tetapi juga waktu dan cara aplikasinya. Tujuan penelitian ini adalah untuk memperoleh waktu dan cara aplikasi paklobutrazol yang memberikan pengaruh paling baik dalam meningkatkan hasil benih kentang G0 di dataran medium. Rancangan penelitian menggunakan Rancangan Acak Kelompok (RAK) Faktorial dengan 3 ulangan. Perlakuannya terdiri dari waktu aplikasi paklobutrazol yaitu 28, 35 dan 42 HST (Hari Setelah Tanam) dan cara aplikasi paklobutrazol yaitu disemprot ke daun, disiram ke media tanam dan kombinasi antara penyemprotan ke daun dan …

Microbial Interactions In The Phyllosphere Increase Plant Performance Under Herbivore Biotic Stress, Muhammad Saleem, Nicole Meckes, Zahida H. Pervaiz, Milton B. Traw

Plant and Soil Sciences Faculty Publications

The phyllosphere supports a tremendous diversity of microbes and other organisms. However, little is known about the colonization and survival of pathogenic and beneficial bacteria alone or together in the phyllosphere across the whole plant life-cycle under herbivory, which hinders our ability to understand the role of phyllosphere bacteria on plant performance. We addressed these questions in experiments using four genetically and biogeographically diverse accessions of Arabidopsis thaliana, three ecologically important bacterial strains (Pseudomonas syringae DC3000, Xanthomonas campestris, both pathogens, and Bacillus cereus, plant beneficial) under common garden conditions that included fungus gnats (Bradysia spp.). …

Short-Term Effects Of Nutrients On A Barrier Island Grassland Community, Ashley Moulton

Theses and Dissertations

Increased nutrient availability globally has the potential to affect community functional composition of plants in nutrient limited environments, such as coastal grassland systems. Stability of these systems are threatened worldwide by urbanization, as well as effects of sea level rise and increased frequency and intensity of storms, and atmospheric N deposition, associated with climate change. Annual net primary productivity (ANPP), species composition, and functional traits (community weighted specific leaf area (CWSLA), leaf area index (LAI), growth form and photosynthetic pathway) were measured across four treatments to assess multiple resource limitation of nitrogen (N) and phosphorus (P) and functional community response …

Pertumbuhan Dan Hasil Padi Gogo Hubungannya Dengan Kandungan Prolin Dan 2-Acetyl-1-Pyrroline Pada Kondisi Kadar Air Tanah Berbeda, A. Y. Rahayu, T. A.D. Haryanto, S. N. Iftitah

Jurnal Kultivasi

Penelitian ini bertujuan untuk mengetahui respons varietas padi gogo pada kadar air tanah berbeda terhadap pertumbuhan, hasil dan kandungan prolin dan 2-acetyl-1-pyrroline biji. Penelitian dilaksanakan di Universitas Tidar Magelang mulai bulan September 2012 sampai dengan Maret 2013. Percobaan menggunakan Rancangan Acak Kelompok Lengkap terdiri atas dua faktor yaitu varietas padi gogo (Inpago Unsoed-1, galur JSPGA 136, varietas Situ-bagendit (non-aromatik) dan varietas Mentik Wangi) dan tingkat kadar air tanah (100 % kapasitas lapang dan 50 % kapasitas lapang). Variabel pengamatan meliputi: tinggi tanaman (cm), jumlah anakan total per rumpun (batang), jumlah anakan produktif (batang), total panjang akar (m), umur berbunga (hst), …

Cover Crop Establishment And Potential Benefits To Arkansas Farmers, Ashley Elizabeth Humphreys

Graduate Theses and Dissertations

Soybean farmers in Arkansas need best management practices (BMPs) that maximize the benefits of using cover crops including planting date and fertilization recommendations. An evaluation of cover crop species, planting dates, seeding rates, fertilizer rates, and N accumulation aids in providing these BMPs. The first objective of this research is to assess the effect of planting date on biomass production, as well as looking at the interaction of seeding rate or fertilizer rate for legumes or non-legumes, respectively, using Austrian winter pea (Pisum sativum), cereal rye (Secale cereale), black oats (Avena strigosa), wheat (Triticum aestivum), and tillage radish (Raphanus sativus). …

Evaluating Pedestrial Compaction Variation & Soil Organic C Content, Gunner B. Decker

Scholars Week

Over time, playing fields are monitored by overall appearance. However, pedestrian compaction is not evenly distributed throughout the entire surface.

Spanish River Carbonatite: Its Benefits And Potential Use As A Soil Supplement In Agriculture, James J

Theses and Dissertations (Comprehensive)

A critical problem facing agriculture today is being able to consistently and sustainably provide plants with adequate nutrients for growth. With this problem being exacerbated by the ever-increasing human population, new perspectives and techniques are required to ensure global food security. In order to fully realize potential solutions, however, plant growth and nutrition cannot be exclusively focused upon. The soil-microorganism-plant system is comprised of many interconnected and interdependent processes that together support plant growth: it is upon these processes that the focus must be placed. In this work, the agromineral Spanish River Carbonatite (SRC) is characterized using the framework of …

A Desert In Disguise: The Resilience Of The Nebraska Sandhills, Jeff Hartman

School of Natural Resources: Dissertations, Theses, and Student Research

The Nebraska Sandhills are the largest sand dune system in the Western Hemisphere, and are unique because they remain relatively undisturbed from row crop agriculture. Research in the past two decades demonstrated that the Sandhills are dynamic on millennial timescales, switching between stabilized, vegetated states to non-vegetated, mobilized states. The Sandhills are currently stabilized, but understanding how ecological processes are altered as sand dunes transition from stabilized to mobilized states, provides insight into the thresholds, stability, and resilience of this grassland ecosystem. My research investigated the impacts of vegetation disturbances on ecological processes and the sand dune surface stability. For …

Rice Grain Yield And Nitrogen Uptake And Ammonia Volatilization From Urea As Affected By Urea Amendment And Simulated Rainfall, Randy Dempsey

Graduate Theses and Dissertations

The effect of rainfall between urea application and flood establishment on N loss and grain yield of rice (Oryza sativa L.) has not been studied. The first research objective was to compare the effects of simulated rainfall amounts and N-(n-butyl) thiophosphoric triamide (NBPT) urease inhibitor rate on NH3 volatilization and rice growth. Three field experiments were conducted and NH3 volatilization was measured in two experiments for 11 days after urea application (DAU) in semi-open chambers. Urea or NBPT-treated urea (NBPT-Urea) was subjected to six simulated rainfall amounts (0-25 mm) applied 5 to 15 h after urea application and flooded 7 …

Productivity And Biological Nitrogen Fixation Of Different Species Of Vetches (Vicia Spp.) Under The Rainfed Conditions Of West Asia, Ali Abd El Moneim, Mohan C. Saxena

IGC Proceedings (1977-2023)

The low rainfall areas of West Asia are characterized by pastoral production system primarily based on small ruminants (sheep and goats). Rangelands serve as the main source of feed. With increasing population, the demand for livestock products has increased. As a consequence, the stocking rates have soared, increasing the pressure on rangelands. Rangeland degradation has therefore been increasing threatening the sustainability of livestock production system and the livelihood of the people dependent on it. Production of additional feed is essential to reduce the pressure on rangelands. Vetches (Vicia spp.) are endemic in the area and can be potential source …

Livestock Production From Grasslands With Improved Management Compared To Traditional Management, Florian Leiber

IGC Proceedings (1977-2023)

The value of traditional versus improved management systems for grassland is discussed. The set target is the persistence of the ecological, economic and social multifunctionality of grasslands and the increase of food output from these areas without increasing parallel requirements for arable crop or energy inputs. Based on the fact that historically traditional systems were stable and sustainable in many cases, while severe damage is faced nowadays, it is argued that lot of improvement should be based on the acknowledgment of successful traditional practises. The challenge might rather be to define improvement as a contemporary development of traditional techniques. The …

Potential Of Forages In Crop Diversification And Crop Rotation, Martin H. Entz, Joanne Thiessen Martens

IGC Proceedings (1977-2023)

Redesign of agricultural systems according to ecological principles has been proposed for the development of sustainable systems. We review a wide variety of ecologically-based crop production practices that focus on forage crops in farming systems and discuss their potential role in enhancing the profitability, environmental sustainability and resilience. Crop-livestock systems that most closely mimic natural systems through appropriate integration of diverse components appear to offer the greatest potential benefits. These systems are more energy efficient and combine high productivity with low ecological footprint. Greater understanding of ecological relationships within crop-livestock systems are required to purposefully and proactively redesign agricultural systems …

Forage Seed Quality: Dormancy, Standards And Quarantine, John G. Hampton

IGC Proceedings (1977-2023)

There are many dimensions to the concept of seed quality. Viable seed which will not germinate when provided with all the requirements for germination is dormant. Forage grasses mostly exhibit non-deep physiological dormancy (PD), while physical dormancy (PY) is common in forage legumes where imbibition is prevented by the seed coat’s impermeability to water (hard seed). Methods for breaking PD and PY to allow germination testing and/or crop establishment are discussed.

In the seed industry seed quality standards are an important feature of quality assurance and may apply for seed production contracts, seed certification, seed sale and seed importing. Standards …

Quality Seed Production And Effective Marketing Systems For Development Of Grasslands, M. Philip Rolston

IGC Proceedings (1977-2023)

Seed quality is defined as (i) maintaining genetic purity using seed certification principles (generation system; isolation; previous cropping history); (ii) achieving high levels of physical purity (especially low weed seed levels) by in field weed control and seed cleaning; (iii) achieving high levels of seed germination at harvest and maintaining germination through the seed supply chain. Seed production systems must not only produce high quality seed but also achieve economic seed yields. Seed crops have to be profitable (by being high yielding) to justify the investment of time and input costs to achieve quality. This in turn requires supporting research …

Scouting Benefits And Developing Innovations In Temperate Grassland To Sustainable Agriculture Production, Walter Ayala, Ethel Barrios, Ignacio Macedo, Jorge Sawchik, José A. Terra

IGC Proceedings (1977-2023)

Agricultural intensification raises concern about land use and future effects to natural resources. The world demand for grain, meat and forest products is increasing constantly. Changes are occurring at large scale, being a compromise for policy makers to contribute to identify opportunities to readdress the productive scenario. There is available technology to reduce impacts, without restricting necessarily productivity. Grasslands provide a large series of economical and ecological benefits to the agricultural systems, being the literature exhaustive in examples. Ley-farming and cover crops technologies are good examples of environmentally sound soil management practices. The society is also worried about an improper …

Evergraze: A Partnership Between Researchers, Farmers And Advisors To Deliver Effective Grassland Management, Warwick B. Badgery, Kate Sargeant, Michael A. Friend, Scott Glyde, Paul Sanford, Ralph Behrendt, Meredith L. Mitchell, Sean Murphy, Angela Avery

IGC Proceedings (1977-2023)

The profitable and sustainable management of livestock production from grassland systems is challenging and it can be difficult to develop a research structure that addresses farmer’s needs and has acceptable rigour and on-ground impact. This paper describes the attributes of research, development and extension (RD&E) programs that are required for a successful partnership between researchers, farmers and advisors. Insights are provided from the EverGraze program that designed, tested and implemented farming systems based on perennial pastures across southern Australia. With this project farmers and advisors were involved in setting research direction, designing experiments, providing strategic guidance over the management of …

Ecologically And Socially Sustainable Livestock Development In Marginal Areas, Ilse Köhler-Rollefson

IGC Proceedings (1977-2023)

“Marginal areas” are perceived as difficult and unproductive landscapes, always under the threat of drought, desertification and poverty. Yet, both dryland and high altitude marginal areas have an extraordinary output of livestock products; in the efficiency of producing human-edible protein they far surpass more fertile areas. This productivity under adverse climatic conditions rests on sophisticated strategies and social institutions developed by pastoral communities to deal with variability in the availability of resources. It depends on the use of animal genetic resources that are adapted to make best use of local vegetation and can cope with seasonal variations in availability. Livestock …

Valuing Variability--New Perspectives On Climate Resilient Dryland Development, Saverio Kratli

IGC Proceedings (1977-2023)

Valuing Variability is a challenge to the view of the drylands as naturally vulnerable to food insecurity and poverty. It argues that improving agricultural productivity in dryland environments is possible by working with climatic uncertainty rather than seeking to control it – a view that runs contrary to decades of development practice in arid and semi-arid lands.

Participatory And Holistic Approaches With Grassland Farmers And Development Of Policies, Alain Peeters

IGC Proceedings (1977-2023)

The world is changing rapidly. Grassland farmers and ruminant livestock breeders will have to adapt to these changing environmental, social and economic conditions. Research can help them at the condition that linear ‘top-down’ technology transfer methods are abandoned for the benefit of participatory and holistic approaches. These approaches classified in the generic term of ‘Farming System Research’ consider farmers as real research partners, and they merge farmer’s and scientist’s ideas with those of other stakeholder types. They combine scientist’s and farmer’s knowledge for creating fast innovations, easily adopted by farmers since farmers themselves contribute to their design and their development. …

Sustainable Grasslands: Resolving Management Options For Livelihood And Environmental Benefits, David R. Kemp, Warwick B. Badgery, David L. Michalk

IGC Proceedings (1977-2023)

To help solve the major issues of improving livelihoods and environmental services, grassland research needs to be evaluated within the context of relevant farm systems. Treatments need to show that they not only have significant effects but that they have effects that are meaningful in the context of the relevant farm system. Research often defines an optimum criterion for management that is a single point, but that is difficult to achieve in practice, especially when there are several components in a grassland system that need to be optimised. It is argued that an appropriate criterion for optimising management is a …

Climate Change Impact And Adaptation In Temperate Grassland And Livestock Industries, Afshin Ghahramani, Andrew D. Moore

IGC Proceedings (1977-2023)

Climate is projected to have negative impact on temperate grassland and livestock productions across the globe. Moderately elevated atmospheric CO₂ in the near future is expected to increase plant photosynthetic rates but this is likely to be limited by soil nitrogen deficits. However, in Australia at least it is unlikely that positive effect of elevated CO₂ on plant production be able to offset the negative impacts of climate change. Currently there is a considerable gap between actual and achievable production and profit in Australian grazing systems and many management and genetic improvements for climate adaptation would operate by …

Climate-Smart Brachiaria For Improving Livestock Production In East Africa: Emerging Opportunities, Sita R. Ghimire, Donald M. G. Njarui, Mupenzi Mutimura, Juan A. Cardoso, Linda Johnson, Elias M. Gichangi, Suliana Teasdale, Kennedy Odokonyero, John Caradus, Idupulapati M. Rao, Appolinaire Djikeng

IGC Proceedings (1977-2023)

Brachiaria grass is an important tropical forage of African origin with desirable attributes of agricultural and environmental significance. Brachiaria has been extensively cultivated as a pasture across the tropics except in its endemic provenance of Africa. In 2013, a collaborative research program was initiated in Kenya and Rwanda with the aim of improving the availability of quality livestock feeds adapted to drought and low fertility soils using Brachiaria. The outcomes sought were increased livestock productivity leading to improved farmer income and the development of seed production opportunities. The program has identified five preferred cultivars, and four of them are currently …