Botany Commons^™

A New Species Of Foliicolous Lichenized Fungi From Southwest China: Calopadia Ruiliensissp. Nov., Hai-Xia Wu, Wei-Bin Ren, Xin-Hao Li, Zi-Xiang Yang

Turkish Journal of Botany

Calopadia ruiliensis, found on living leaves in southwest China, is described as a new species, based on morphology and phylogenetic analysis. It is characterized by a foliicolous thallus with yellow greenish to creamy yellow color, rounded apothecia with nonpruinose to thinly pruinose disc, a dark olive-green hypothecium and black-brown subhymenium, and 1-spored asci producing muriform ascospores. Phylogenetic analysis of LSU sequence data shows that the new species clusters in the genus Calopadia with high bootstrap support. The new species is compared with closely related and similar species of Calopadia and a comprehensive description and micrographs are provided.

Temperate Eurasian Origins Of Hawaiian Chenopodium (Amaranthaceae) Plus Description Of A New Species Endemic To Moloka‘I, Jason T. Cantley, Angela J. Mcdonnell, J Branson, S R. Long, W Garnett, Christopher T. Martine

Faculty Journal Articles

Chenopodium taxa of Hawai‘i are tetraploids distinguished from other members of the circumglobally distributed genus by minute morphological characters. Because of these reasons, the geographic origin of Hawaiian Chenopodium has remained unclear. Across the Hawaiian Archipelago, Chenopodium taxa are morphologically variable and grow in highly disparate xeric habitats, especially in terms of precipitation, temperature, wind, salt spray, and solar irradiation. Habitats include dry subalpine shrublands, sandy beach strand of atolls in the Northwest Hawaiian Islands, dry forests, and precipitously tall sea cliffs of northwestern Moloka‘i. From the Moloka‘i sea cliffs, which are battered by high energy winds, salt spray, and …

Karyotypic Phylogeny And Polyploidy Variations Of Paronychia (Caryophyllaceae) Taxa In Turkey, Hali̇l Erhan Eroğlu, Derya Altay, Ümi̇t Budak, Esra Marti̇n

Turkish Journal of Botany

Chromosomal data can provide very valuable information about karyotypic phylogeny and speciation. This is the first study on karyotype phylogeny and polyploidy variations of the genus Paronychia. In this context, the results are these: (1) in 14 taxa, the first report on chromosomes numbers; (2) in 2 taxa, equal chromosome numbers as in the previous report; (3) in all taxa, the first report of detailed karyotype analyses; (4) karyotype asymmetry data and generally symmetrical karyotypes; (5) karyotypic variations by mechanisms of dysploidy and polyploidy; and (6) phylogenetic relationships in Paronychia. The data indicate that Anatolia is an important area for …

Systematics And Ecology Of The Andean Neotropical Schefflera (Araliaceae) With Globose Capitate Inflorescences And Use Of Niche Modeling For Iucn Red List Threat Assessment Of Plerandra Elegantissima (Araliaceae), Carlos V. Rodrigues

Dissertations, Theses, and Capstone Projects

Since the end of the 19^thcentury, ScheffleraJ.R. Forst. & G. Forst.has been recognized as the largest and most wide-ranging genus of Araliaceae. It can be found throughout the humid tropics and subtropics, is not particularly diverse at low elevations in the warmest regions, and a few taxa extend into warm-temperate areas. As currently circumscribed, the genus contains 605 described species and many hundreds more awaiting formal description. However, a succession of phylogenetic studies have confirmed that Schefflera, as currently circumscribed,is polyphyletic, comprising five geographically centered lineages scattered across the phylogenetic tree of Araliaceae, and …

Phylogenetic Placement, Floral Anatomy, And Morphological Characterization Of The North African Pastoral Halophyte Atriplex Mollis Desf. (Amaranthaceae), Abderrazak Tlili, Imed Sbissi, Faycal Boughalleb, Hassen Gouja, Teresa Garnatje, Joan Vallès, Mohamed Neffati

Turkish Journal of Botany

Atriplex mollis Desf. (Amaranthaceae), a North African endemic halophytic species, is further described in this study. Phylogenetic analysis based on a combined dataset of ITS and ETS rDNA and atpB-rbcL and trnK cpDNA showed that A. mollis is closely related to the Malta- and Gozo-endemic Cremnophyton lanfrancoi Brullo & Pavone. Given this close phylogenetic relationship, A. mollis is also considered among the oldest species of Atriplex, together with C. lanfrancoi. Molecular data also suggest that A. mollis in North Africa, C. lanfrancoi on Malta Island, and Atriplex cana Ledeb.in Eurasian semideserts constitute a separate clade within the tribe Atripliceae. As …

Fungal Dna Barcode (Its Nrdna) Reveals More Diversity Than Expected In Tulostoma From Macedonia, Katerina Rusevska, Franciso De Diego Calonge, Mitko Karadelev, María Paz Martín

Turkish Journal of Botany

With the aim of clarifying the number of Tulostoma species in Macedonia, and to verify some previous collections, molecular analyses were carried out on four morphologically identified species collected in different habitats (at the edges of oak or juniper forests, pine plantations, meadows, rocky places, roadsides). Sixty-two new sequences were generated and compared with recently published sequences included in public databases. According to the barcoding sequences fourteen Tulostoma species are identified in Macedonia and ten of them were assigned to known species: Tulostoma brumale , T. fimbriatum/, T. lusitanicum, T. cf. moravecii, T. melanocyclum, T. punctatum, T. simulans, T. squamosum, …

Hedysarum Alamutense (Fabaceae-Hedysareae), A New Species From Iran, And Itsphylogenetic Position Based On Molecular Data, Haniyeh Nafisi, Shahrokh Kazempour-Osaloo, Valiollah Mozaffarian, Mohammad Amini Rad

Turkish Journal of Botany

Hedysarum alamutense, a new species in the tribe Hedysareae DC. (Fabaceae), is described and illustrated. It belongs to the traditionally recognized Hedysarum L. section Multicaulia (Boiss.) B.Fedtsch., which extends over the West Alborz Mountains in northern Iran. This species is characterized by greenish stems and corolla persisting in fruiting stage and has mostly 1?2-jointed, unarmed, biconvex pods with short hairs becoming bald early, and flattened margins. Phylogenetic analyses of molecular data clearly unite this species with H. formosum Fisch. & C.A.Mey. ex Basin. The new species is characterized by 4 singleton nucleotide substitutions, suggesting it as a distinct taxon. Phylogenetic …

Systematics Of Malesian-Pacific Piper (Piperaceae), Rani Asmarayani

Dissertations

Comprised of ~2400 spp., Piper is a major clade in the magnoliid angiosperms. Three major groups are recognized in Piper, i.e., the Neotropical, Asian and South Pacific. Unlike Neotropical Piper,relationships in the Paleotropical Piper remain enigmatic. This study focused on the Paleotropical Piperwith emphasize on the Malesian-Pacific Piper, Malesia being the center of diversity of the genus in the Paleotropics. The goals are to evaluate relationships within Paleotropical Piper (chapter 1), to evaluate characters, morphological (chapter 1) and stem anatomical (chapter 2), that may distinguish clades, and to investigate the species boundaries focusing on the well-supported …

Resolving The Position Of Astragalus Borysthenicus Klokov Within The Astragalus L. Species, Nataliia Karpenko, Viktoriia Martyniuk, Oksana Tyshchenko, Andrii Tarieiev, Ayten Tekpinar, Vitaliia Didenko, Igor Kostikov

Turkish Journal of Botany

The present study is focused on several species from the genus Astragalus L. with the aim to clarify the taxonomic status of Ukrainian local endemic species Astragalus borysthenicus Klokov, which is sometimes considered a synonym to A. onobrychis L. In this study, the morphological features, current taxonomy, taxonomical history, and phylogenetic analysis based on rDNA Bayesian inference, as well as comparative analysis of ITS1 and ITS2 secondary structures, were investigated. It was found that A. borysthenicus is distant from A. onobrychis according to phylogenetic analysis. Moreover, A. borysthenicus has differences from the investigated taxa in its secondary structures of ITS1 …

Xanthagaricus Pakistanicus Sp. Nov. (Agaricaceae): First Report Of The Genus From Pakistan, Shah Hussain, Najam-Ul-Sahar Afshan, Habib Ahmad, Hassan Sher, Abdul Khalid

Turkish Journal of Botany

Xanthagaricus pakistanicus is described as a new species from lowland northern Pakistan, based on morphological and molecular data. It is characterized by a yellowish pileus, covered with dark brown squamules, a stipe with yellowish fibrils, globose basidiospores, and pileal squamules made up of pseudoparenchymatous epithelium with encrusted walls. Molecular phylogenetic trees were inferred based on nucleotide sequences of the internal transcribed spacer (ITS1-5.8S-ITS2) region and 28S nuclear ribosomal DNA. In phylogenetic analyses the genus Hymenagaricus sensu lato (s. l.) was inferred as a nonmonophyletic group and recovered in two monophyletic clades, consisting of species of the genera Xanthagaricus and Hymenagaricus …

Ekimia Ozcan-Secmenii (Apiaceae), A New Species From Southwest Anatolia, Turkey, Serdar Gökhan Şenol, Volkan Eroğlu, Nazli Bahar Peli̇t, Duygu Bozyel

Turkish Journal of Botany

Ekimia ozcan-secmenii Şenol & Eroğlu sp. nov. (Apiaceae) is described from SW Turkey. E. ozcan-secmenii differs from its close affinity, E. bornmuelleri, by life form (monocarpic), petal and bracteole morphology, and mericarp features. These data were more supported by the results of nrDNA ITS sequences. The ML tree depicted based on phylogenetic studies aimed to reveal the closeness of the Laserpitium and Prangos species as well as the location the affinity of species in the genus Ekimia. The taxonomic situation of Prangos hulusi was also evaluated based on nrDNA ITS sequences. Since E. ozcan-secmenii is distributed in Sami Soydam Sandalcık …

A New Species Of Cymbocarpum (Apiaceae) From The Central Anatoliaregion Of Turkey And Its Phylogenetic Position Within Tordylieae, Yusuf Menemen, Burçi̇n Çingay, Aşkin Öykü Çi̇men, Şeref Ertaş

Turkish Journal of Botany

A new species, Cymbocarpum alinihatii, is described from the Central Anatolia Region of Turkey. Diagnostic and morphological characteristics that distinguish it from allied species C. anethoides, C. wiedemannii, C. amanum, C. erythraeum, and C. marginatum and an identification key for all Cymbocarpum species are provided. To assess its phylogenetic placement, a maximum parsimony analysis of nrDNA ITS sequences from representative members of tribe Tordylieae was carried out. It shows that the new species nests within a well-supported clade comprising members of Cymbocarpum with strong bootstrap value, but it is distinguished from its most closely related species, C. anethoides and C. …

A New Species Of Barssia (Ascomycota, Helvellaceae) From Turkey, Hasan Hüseyi̇n Doğan, Fuat Bozok, Hatira Taşkin

Turkish Journal of Botany

A new species of the genus Barssia was identified from Turkey using both morphological and phylogenetic analysis of the ribosomal internal transcribed spacer region (ITS rDNA) and nuclear ribosomal large subunit (LSU rDNA) gene sequences. Macroscopic and microscopic features of the fresh samples were photographed and a diagnostic key of the genus Barssia was built considering characteristics of known species.

Boletus Himalayensis (Basidiomycota; Boletales), A New Porcini Species From Pakistan, Samina Sarwar, Sana Jabeen, Ishtiaq Ahmad, Bryn Dentinger, Abdul Nasir Khalid

Turkish Journal of Botany

Morphology and phylogenetic analyses using the ITS and LSU regions of nrDNA were carried out on bolete collections belonging to Boletus s. str., originating from the Himalayan region of Pakistan. The phylogenetic analysis outlined the existence of previously unknown species of this genus. It is described here as Boletus himalayensis . Illustrations of the macroscopic characters and the microscopic features of the new species are provided. The distinction of B. himalayensis from allied species is discussed.

Phylogenetic Patterns Of Foliar Mineral Nutrient Accumulation Among Gypsophiles And Their Relatives In The Chihuahuan Desert, Clare Muller, Michael J. Moore, Zoe Feder, Helene Tiley, Rebecca E. Drenovsky

2017 Faculty Bibliography

PREMISE OF THE STUDY: Gypsum endemism in plants (gypsophily) is common on gypsum outcrops worldwide, but little is known about the functional ecology of Chihuahuan Desert gypsophiles. We investigated whether leaf chemistry of gypsophile lineages from the northern Chihuahuan Desert are similar to leaves of related nonendemic (gypsovag) species relative to their soil chemistry. We expected widely distributed gypsophiles (hypothesized to be older lineages on gypsum) would have distinct leaf chemistry from narrowly distributed, relatively younger lineages endemic to gypsum and gypsovags, reflecting adaptation to gypsum.

METHODS: We collected leaves from 23 gypsophiles and related nonendemic taxa growing on nongypsum …

Systematics, Biogeography, And Species Delimitation Of The Malagasy Psorospermum (Hypericaceae), Heritiana S. Ranarivelo

Dissertations

Psorospermum belongs to the tribe Vismieae (Hypericaceae). Morphologically, Psorospermum is very similar to Harungana, which also belongs to Vismieae along with another genus, Vismia. Interestingly, Harungana occurs in both Madagascar and mainland Africa, as does Psorospermum; Vismia occurs in both Africa and the New World. However, the phylogeny of the tribe and the relationship between the three genera are uncertain. Using freshly collected specimens from my fieldwork as well as extant herbarium specimens, I aimed first, to generate a phylogeny of Psorospermum; second, to investigate its biogeography; and third, to investigate species boundaries within Malagasy Psorospermum …

Dianthus Ucarii (Caryophyllaceae): A New Species From The Northwest Of Turkey, Ergi̇n Hamzaoğlu, Murat Koç, İlker Büyük

Turkish Journal of Botany

Dianthus ucarii Hamzaoğlu & Koç (Caryophyllaceae) is described as a new species to science based on material collected in Kırklareli Province in northwestern Turkey. The new taxon belongs to sect. Carthusiani (Boiss.) F.N.Williams and it is closely related to Dianthus pinifolius Sm., an Eastern Mediterranean element. A description, illustration, and identification key for the new species are given. In addition, D. ucarii and D. pinifolius are compared in terms of general morphology and molecular phylogeny.

A New Species Of Micromeria (Lamiaceae) From Köyceğiz (Muğla, Southwest Of Turkey), Hayri̇ Duman, Tuncay Di̇rmenci̇

Turkish Journal of Botany

A new species, Micromeria aybalae H.Duman & Dirmenci (Lamiaceae), Micromeria Benth. sect. Micromeria, is described from Muğla Province in southwestern Turkey. A description, taxonomic note, distribution map, habitat, and nrDNA ITS and cpDNA trnL-F based phylogeny are presented. The differences between the new species and its allies, Micromeria cremnophila Boiss. & Heldr. s.l. and M. hispida Benth., are discussed, and an identification key is provided for the Turkish Micromeria.

Taxonomy Of Poa Jubata And A New Section Of The Genus (Poaceae), Evren Cabi̇, Robert John Soreng, Lynn Gillespie

Turkish Journal of Botany

Poa jubata A.Kern. is an ephemeral, southeastern European species of which little is known. A molecular phylogenetic analysis of Poa L., including all previously identified major lineages, shows this species to be isolated, with a genotype here designated as J (plastid) j (nrDNA). It is assigned to the monotypic P. sect. Jubatae sect. nov. The section is differentiated from other Poa sections in having 5-nerved upper glumes, very narrow palea flanges, an annual habit, and erect solitary culms. Poa jubata occurs along coastal regions of the Balkans and is rather rare. Two new collections were made in 2015 in Thrace, …

Cladonia Trapezuntica (Cladoniaceae, Lichenized Ascomycota): A Robust Morphotype Of Pycnothelia Papillaria, A Taxonomic Study With Conservational Survey, Ayhan Şenkardeşler, Demet Cansaran Duman, Laszlo Lökös, Teuvo Ahti

Turkish Journal of Botany

The long-neglected lichen described as Cladonia trapezuntica was rediscovered at its type locality in Turkey thanks to historical maps available at the Natural History Museum in Vienna. Molecular, morphological, and chemical analyses were applied to determine whether C. Trapezuntica is a distinct species or rather falls within the phenotypic variation of Pycnothelia papillaria. Although most of the podetia appear to be unusual for P. Papillaria, the molecular evidence indicates that C. Trapezuntica should be considered as a synonym of P. Papillaria, and the cushion-like growth form, taller podetia with irregular to dichotomously or trichotomously branching pattern, and scarce primary thallus …

A New Species Of Lepiota, Lepiota Lahorensis, From Lahore, Pakistan, Tayyaba Qasim, Abdul Khalid, Else Vellinga

Turkish Journal of Botany

Lepiota lahorensis sp. nov. is described from Lahore, Pakistan. Its characterizing features are pinkish brown pileus with dark brown furfuraceous scales, oblong to ellipsoid spores, clavate cheilocystidia, and pileus covering made up of trichodermal elements without shorter elements at their base. The phylogenetic analysis based on nuclear ribosomal internal transcribed spacer sequence shows its unique position in sect. Ovisporae.

Study Of Phylogenetic Relationship Of Turkish Species Ofmatthiola (Brassicaceae) Based On Issr Amplification, Beki̇r Doğan, Mustafa Çeli̇k, Murat Ünal, Abdurrahman Sefali, Esra Marti̇n, Ayla Kaya

Turkish Journal of Botany

Matthiola W.T.Aiton is a taxonomically complex genus in which there are many problems, mostly with Matthiola longipetala and M. Odoratissima. Matthiola species native to Turkey were collected from various locations in Anatolia, and their DNA was isolated. Revision studies performed on the basis of molecular data obtained from studies conducted in recent years have made the phylogenetic relationships and systematic positions of the taxa more apparent and reliable. Consequently, the remaining taxonomic problems among the species have been resolved through the use of DNA-based molecular analysis methods, which, unlike phenotype studies, are not affected by environmental factors. The inter-simple sequence …

Taxonomy Of The Genus Athallia And Its Diversity In Turkey, Jan Vondrak, Mehmet Gökhan Halici, Mi̇that Güllü, Rasi̇me Demi̇rel

Turkish Journal of Botany

Molecular analyses of ITS nrDNA, using 42 new and 56 GenBank sequences, revealed 12 supported lineages of Athallia consistent with phenotype data. We regard these lineages as species. Eight of them were previously recognized as species in Athallia, and here we make three new combinations: A. Baltistanica, A. Brachyspora, and A. Necator. Eight of these species have been recorded in Turkey; of them, A. Baltistanica and A. Saxifragarum are new to the country. The former is also new to Greece. Athallia baltistanica is recorded for the first time outside the Karakoram Mountains (N Pakistan). We propose a broader species concept …

Genetic Relationships Among The Genera Cicer L., Lathyrus L., Lens Mill., And Vicia L., Together With Similarity Of Lens Taxa Based On Morphological And Aflp Markers, Zeynep Yildizdoğan, Cengi̇z İkten, Nedi̇m Mutlu, Cengi̇z Toker

Turkish Journal of Botany

The molecular characterization of the seven taxa in the genus Lens Mill. with Vicia montbretii has not been performed, and species of the genera Vicia L., Lathyrus L., and Cicer L. using AFLP markers have not been elucidated so far. The objectives of the present study were the assessment of (i) genetic relationships among the genera Lens, Vicia, Lathyrus, and Cicer based on AFLP markers, (ii) relationships within the genus Lens including the accessions of L. lamottei Czefr., L. tomentosus Ladiz., and L. odemensis Ladiz., based on morphological and AFLP data, and (iii) position of the species Vicia montbretii (Fisch. …

Phylogenetic Relationships Among Native Oxytropis Species In Turkey Using The Trnl Intron, Trnl-F Igs, And Trnv Intron Cpdna Regions, Ayten Tekpinar, Seher Karaman Erkul, Zeki̇ Aytaç, Zeki̇ Kaya

Turkish Journal of Botany

We tested the phylogenetic utility of three chloroplast DNA loci, i.e. the trnL(UAA) intron, trnL(UAA)-F(GAA) intergenic spacer (IGS), and trnV(UAC) intron, across thirteen native Oxytropis species. Our objective was to determine whether any of these chloroplast DNA markers could be beneficial to figure out phylogenetic relationships among Oxytropis species. To increase the interspecific sampling, nine sequences of the trnL intron and trnL-F regions were retrieved from GenBank and included in the analyses. No sequence of the trnV intron region was available in the database and so only sequences of the native species were used for the analyses. Phylogenies derived from …

Molecular Phylogenetics And Historical Biogeography Of The Tribe Chiococceae (Rubiaceae), Sushil Kumar Paudyal

Biological Sciences Theses & Dissertations

Chiococceae are a monophyletic assemblage of morphologically very diverse groups of plants ranging in habit from subshrubs to shrubs to tall trees exhibiting an astonishing variation in shapes and sizes of corolla, and kinds of fruits and seeds. They are primarily distributed in the Neotropics but also occur in the West Pacific islands; thus exhibiting amphi-Pacific tropical disjunction. This study addresses the phylogenetic relationships and biogeography of the Chiococceae using molecular DNA sequence data, and presents novel data on the tribal and generic delimitations, intergeneric relationships, and the origin and dispersal of this group.

In the most recent tribal delimitations …

Towards A New Classification Of Salvia S.L.: (Re)Establishing The Genus Pleudia Raf., Maria Will, Natalie Schmalz, Regine Classen-Bockhoff

Turkish Journal of Botany

Salvia L. İn its traditional circumscription is the largest genus within the mint family. To date, the magnitude of the task has rendered it difficult to provide a genus-wide revision based on morphological data. Current molecular investigations based on a dense taxon sampling representing the whole phenotypic diversity and distribution range of Salvia confirmed that the genus is polyphyletic. Salvia species fall in 4 distinct clades, although all of them, except Clade IV, also include non-Salvia genera. A taxonomic revision is thus urgently needed with two different approaches that have to be considered: (1) to include the 5 morphologically distinct …

Phylogeny Of Korean Opuntia Spp. Based On Multiple Dna Regions, Krishnamoorthy Srikanth, Sung Soo Whang

Turkish Journal of Botany

Although Opuntia species are of high agronomic value in Korea, the taxonomic position of Korean Opuntia species has never been investigated. The taxonomic position of Korean Opuntia spp. Within the tribe Opuntieae was examined based on DNA sequence analysis of matK, trnL-F, atpB-rbcl, and ITS regions. The total amplified sequence length was 2977 bp; only 18 parsimonious informative sites were present, even though they belonged to different species. A phylogenetic tree using both the maximum likelihood method with 2000 bootstrap replications and Bayesian posterior probabilities was constructed. The new forma, Opuntia humifusa f. Jeollaensis, used in this study was placed …

A New Species Of Teucrium Sect. Scordium (Lamiaceae) From Se Of Turkey, Taner Özcan, Tuncay Di̇rmenci̇, Fati̇h Coşkun, Ekrem Akçi̇çek, Özal Güner

Turkish Journal of Botany

A new species of Teucrium L. from Southeast Anatolia (Turkey), Teucrium sirnakense Özcan & Dirmenci, is described and illustrated. The new species belongs to the sect. Scordium Boiss. and is closely related to Teucrium melissoides Boiss. & Hausskn. and Teucrium scordium L. s.l. The differences between the new species and its allies are discussed. A description, distribution map, ITS nrDNA phylogeny, and taxonomic comments on the new species are provided.

Genetic Diversity And Relationships Within And Among Onobrychis Species Using Molecular Markers, Mohammad Zarrabian, Mohammad Mahdi Majidi

Turkish Journal of Botany

Little is known about the taxonomic relationships of the genus Onobrychis (Fabaceae). To study inter- and intraspecific variations and the relationships among the species, 102 accessions (33 species) of the genus Onobrychis were evaluated using 22 inter-simple sequence repeat (ISSR) markers. Almost all the species belonging to the section Onobrychis clustered together. A similar pattern was found with the species belonging to the section Hymenobrychis, while those of the section Lophobrychis did not cluster together. The results indicate that the section Lophobrychis has a comparatively derived organization that can be attributed to the differences in their taxonomic delimitation. Geographical pattern …