Botany Commons^™

Genome-Wide Association And Genomic Prediction For Iron And Zinc Concentration And Iron Bioavailability In A Collection Of Yellow Dry Beans, Paulo Izquierdo, Rie Sadohara, Jason Wiesinger, Raymond Glahn, Carlos Urrea, Karen Cichy

Department of Agronomy and Horticulture: Faculty Publications

Dry bean is a nutrient-dense food targeted in biofortification programs to increase seed iron and zinc levels. The underlying assumption of breeding for higher mineral content is that enhanced iron and zinc levels will deliver health benefits to the consumers of these biofortified foods. This study characterized a diversity panel of 275 genotypes comprising the Yellow Bean Collection (YBC) for seed Fe and Zn concentration, Fe bioavailability (FeBio), and seed yield across 2 years in two field locations. The genetic architecture of each trait was elucidated via genome-wide association studies (GWAS) and the efficacy of genomic prediction (GP) was assessed. …

The Long-Term Effects Of Prescribed Fire On Floral Abundance And Bumble Bee Abundance In Mixed-Oak Forests Of Southeastern Ohio, Moses Shafer

Theses, Dissertations and Capstones

Pollinators are declining due to climate change and habitat loss driven by agriculture and urbanization. In fire-adapted ecosystems, fire promotes the biodiversity of plants by creating space, reducing competition, and increasing light and nutrient availability. However, little is known regarding the effects of fire on floral abundance of plants used by Bombus. The overall goal of this project was to assess the long-term effects of fire on floral abundance and Bombus abundance. Our specific questions were: (1) How does fire frequency influence floral abundance?, (2) How does fire frequency influence floral abundance of species specifically utilized by bumble bees?, …

Nutritional Convergence In Plants Growing On Gypsum Soils In Two Distinct Climatic Regions, Clare T. Muller, Andreu Cera, Sara Palacio, Michael J. Moore, Pablo Tejero, Juan F. Mota, Rebecca E. Drenovsky

2024 Faculty Bibliography

Background and Aims

Soil endemics have long fascinated botanists owing to the insights they can provide about plant ecology and evolution. Often, these species have unique foliar nutrient composition patterns that reflect potential physiological adaptations to these harsh soil types. However, understanding global nutritional patterns to unique soil types can be complicated by the influence of recent and ancient evolutionary events. Our goal was to understand whether plant specialization to unique soils is a stronger determinant of nutrient composition of plants than climate or evolutionary constraints. Methods

We worked on gypsum soils. We analysed whole-plant nutrient composition (leaves, stems, coarse …

Environmental Biology Masters Capstone, Antonio Gonzalez-Pita

Regis University Student Publications (comprehensive collection)

Human wildlife interactions (HWI) pose a complex challenge for wildlife managers. Human encroachment into wildlife habitat and the growing number of outdoor recreationists are increasing the frequency of contact and conflict, especially in regions such as the Front Range of Colorado. Geographic information systems (GIS), which use a combination of remote sensing and environmental survey data, allow for predictive spatial analyses of where human wildlife interactions are likely to occur. I used publicly reported observations of moose to create spatial predictive maps in a species distribution model framework. Slope and elevation were shown to be the strongest predictors of HWI, …

Letter From The Faculty Editor, Beth Kegley

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Stream Restoration Effectiveness In Mullins Creek In Fayetteville, Arkansas, Amadeo Scott, Shannon Speir

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

Lotic waterways are vital for habitat, food, water, and flood protection, but urbanization poses a major threat to their integrity. Runoff from urban surfaces leads to pollution, flashiness, loss of biodiversity, and other symptoms, also known as Urban Stream Syndrome (USS). Streams can be restored in order to combat USS, but most restorations are not monitored, so their long-term effectiveness is unknown. This study quantitatively evaluated a decade-old stream restoration in Fayetteville, Arkansas, to assess its effectiveness in combating USS and achieving set restoration goals, and to gain insights for future restoration projects. Restoration goals included decreasing erosion and sedimentation, …

Evaluating Efficiency And Accuracy Of Three Texture Analysis Methods For Blackberry Fruit, Rhys M. Brock, Carmen Johns, Katelyn Lust-Moore, Margaret Worthington

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

A major objective of the University of Arkansas System Division of Agriculture (UADA) Fruit Breeding program is to improve the texture of blackberry (Rubus subgenus Rubus Watson). Blackberry varieties with improved fruit firmness transport and store well and may maintain superior quality under challenging postharvest conditions than softer varieties. Increased firmness may also make cultivars less susceptible to red drupelet reversion (RDR), a postharvest disorder of blackberries in which fully black drupelets revert to red after harvest. This research project aims to assess the efficiency and accuracy of three methods applied in evaluating blackberry firmness. The study compares instrumental analysis …

A Vascular Flora Of The Southern Inyo Mountains, Inyo County, California, Maria J. Jesus

Aliso: A Journal of Systematic and Floristic Botany

The Inyo Mountains in Inyo County, California, are an arid mountain range located between the eastern Sierra Nevada and Death Valley National Park. The study site is ca. 433 km² (167 sq mi), ranging in elevation from 549 to 2955 m (1800 to 9694 ft), and comprises the southern extent of the Inyo Mountains where the Great Basin Desert and Mojave Desert bioregions meet. This area had been poorly represented by botanical collections despite an abundance of distinctive biogeographic features and high diversity in rare and endemic plant species. The objectives of this study were to complete a specimen-based, …

Documenting Plant Biodiversity At The Emu-Owned Parsons Center For Arts And Sciences, Emily Edwards

Master's Theses and Doctoral Dissertations

We present the first vascular plant species checklist for the Eastern Michigan-University-owned property called the Parsons Center for Arts and Sciences. A voucher for each plant species has been deposited in the Eastern Michigan College herbarium and collection data is digitized in the Consortium of Midwest Herbaria. A minimum of three images per species are also available on iNaturalist . The Consortium and iNaturalist databases are publicly available and provide georeferenced locations for each plant. One hundred seventy-one plant species (in 137 genera and 61 families) were documented and identified, representing about 15% of plant species and 41% of families …

Featured Faculty Mentor/Student Team, Austin Jones, Ashley Dowling, Baylie Day

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Building Detailed And Accurate Whole-Plant Concepts: A Morphometrics-Informed Reconstruction Of A Zosterophyll From The Lower Devonian Of Wyoming, Samar R. El-Abdallah

Cal Poly Humboldt theses and projects

The fragmentary state of plant fossils and the modular organization of plants make whole-plant reconstructions of fossil species desirable and feasible. Such reconstructions are key for integrating fossil species in systematic studies. The ca. 410 Ma Beartooth Butte Formation of Wyoming (USA) hosts the only rich Early Devonian plant assemblages in western North America, which fills a major gap in the phytogeography of this interval. I construct a whole-plant concept for a new zosterophyll from the Beartooth Butte Formation based on a detailed morphometric study. More than 600 fragments of the new zosterophyll were observed and 200 of those were …

Whatever Happened To The Snapdragon Family?, W. John Hayden

Biology Faculty Publications

The short answer is DNA sequencing and phylogenetic systematics.

Phylogenetic Relationships Of A North American Radiation Of Clematis (Ranunculaceae), Jesse Harris, Thomas H. Murphy, Erin A. Manzitto-Tripp, Nicolás Medina, Zach Irick, L. Dwayne Estes, Stacey D. Smith

Aliso: A Journal of Systematic and Floristic Botany

Clematis L. is one of many plant genera that contributes prominently to the species richness and endemism of the southeastern United States. Here we examined phylogenetic relationships among species in Clematis sect. Viorna, commonly known as leatherflowers, which are distributed primarily in the southeastern United States. We used data from restriction site-associated ddRADseq to reconstruct a best estimate phylogeny of this group. Our analyses revealed that the North American members of sect. Viorna form a well-supported clade, and several of the traditionally recognized infrasectional taxa were resolved as monophyletic. Although characters employed in classification including habit and inflorescence position …

Induced Thermotolerance In Metarhizium Spp. Using Gamma Irradiation And Mass Spore Production Using Various Substrates To Control Brown Planthopper Nilaparvata Lugens (Stål), Suleiman Abba Muazu

Chulalongkorn University Theses and Dissertations (Chula ETD)

The brown planthopper (BPH), Nilaparvata lugens (Stål), is a major rice pest in Southeast Asia and is developing increased resistance to chemical insecticides. Fungi from the genus Metarhizium offers a promising alternative for biological control, but their efficacy is constrained by slow infectivity and environmental sensitivity. In this study, two Metarhizium isolates, MLUBN038 and MNMHN031, were identified as M. koreanum by multilocus phylogenetic analysis. Improving thermotolerance of the fungus using gamma irradiation generated 79 thermotolerant mutants. Among them, ML038-Mt 71 and MN031-Mt 46 showed improved vegetative heat tolerance at 39 °C and conidial resistance at 45 °C, along with enhanced …

Contents, Discovery Editors

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Diversity Of Herbaceous Flowering Plants In Namtok Phlio National Park Substation 1 (Namtok Trok Nong), Chanthaburi Province, Chanachon Chuchuea

Chulalongkorn University Theses and Dissertations (Chula ETD)

Namtok Phlio National Park is located in Chanthaburi Province in southeastern Thailand at elevations ranging from 30 to 940 meters above mean sea level. Its vegetation is mainly tropical rainforest. Plant exploration and collection of herbaceous flowering plants was carried out from March 2024 to March 2025. A total of 155 species from 111 genera and 31 families were enumerated. The two families with the highest number of species and genera were Orchidaceae, with 53 species in 30 genera, followed by Araceae, with 15 species in 12 genera. Habitat-wise, 76 species were terrestrial, 37 were epiphytic, three were lithophytic, and …

Letter From The Dean, Jeff Edwards

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Discovery: The Student Journal Of Dale Bumpers College Of Agricultural, Food And Life Sciences - Volume 25 2024, Several Authors

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Instructions For Authors, Discovery Editors

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Effect Of Dietary Flavonoids On Growth In Saccharomyces Cerevisiae, Vivian Rivera

Mahurin Honors College Capstone Experience/Thesis Projects

Plant foods contain a diversity of biologically active compounds called phytochemicals, produced by plant species as secondary metabolites. A phytochemical group known as flavonoids has received much scientific attention in recent times with respect to their antioxidative and anti-inflammatory roles. This investigation examined how quercetin and naringenin, the most common dietary flavonoids, affect growth potential of yeast under optimal and stress conditions (temperature, glucose, and oxidative stress). Using Saccharomyces cerevisiae as a model, a dose dependency effect of quercetin and naringenin was observed under optimal conditions when liquid cultures were treated with three different concentrations (75 μM, 150 μM, and …

Vascular Floristic Study Of The Piute Mountains, Kern County, California, Courtney Matzke

CGU Theses & Dissertations

This study describes the vascular flora of the Piute Mountains, located at the southern terminus of the Sierra Nevada in Kern County, California. The study area covers ca. 543 square km (210 square mi), with elevations ranging from 777 m (2,550 ft) to 2,562 m (8,406 ft) at Piute Peak. Though situated in the Sierra Nevada ecoregion, the Piute Mountains lie near the Mojave Desert, Central Valley, and southern California mountains, resulting in a highly diverse, unique flora with plant taxa from each of these regions co-occurring. The study area encompasses varied topography with an assortment of geologic features including …

Trends And Patterns Of Plant Conservation Research In Borneo: A Review, Rizmoon Nurul Zulkarnaen, Sabri Mohd. Ali, Daniele Cicuzza

ASEAN Journal on Science and Technology for Development

Borneo hosts exceptional plant diversity, including numerous endemic species, but faces significant threats from rapid habitat loss driven by deforestation and land-use changes. This study aimed to analyze research trends and forecast future directions through a bibliometric analysis of Scopus data spanning from 1914 to 2023. The bibliometric analysis included publication outputs, citation patterns, thematic mapping, and keyword co-occurrence. We used VOSviewer to visualize bibliometric networks and the Bibliometrix package in R to perform advanced bibliometric analysis and interactive data exploration. The analysis revealed a continuous rise in publications (998 documents), with the Journal of Ecology identified as the most …

Wildflower Of The Year, White Turtlehead (Chelone Glabra), W. John Hayden

Biology Faculty Publications

White Turtlehead is a perennial herb rising from a rhizomatous rootstock.

A Taxonomic Revision Of The Genus Hydnora (Hydnoraceae), Sebastian A. Hatt, Chris J. Thorogood, J. F. Bolin, Lytton J. Musselman, Duncan D. Cameron, Olwen M. Grace

Biological Sciences Faculty Publications

A systematic monograph is presented for Hydnora (Hydnoraceae), a poorly known genus of holoparasitic plants distributed across Africa, Madagascar and southern Arabia. Species of Hydnora are characterised by their underground habit, unusual fleshy flowers and complete absence of leaves or photosynthetic tissue. This is the first detailed monograph of the genus Hydnora since 1935 and is informed by a comprehensive survey of herbarium specimens and literature. Detailed descriptions, full synonymy, distribution maps and discussion concerning confusable taxa are provided for each species, along with notes on ethnobotany, ecology and conservation. We place particular emphasis on the taxonomic value of osmophore …

Response Of Helenium Amarum To Environmental Stressors In The Presence Of Mycorrhizal Fungi And Its Role As A Pollinator Resource, Austin Jameson, Lisa Horth

Biological Sciences Faculty Publications

Globally, climate change is causing shifts in precipitation patterns. Shifting precipitation patterns can be a stressor for many species. One species that is experiencing such stress is Helenium amarum Raf (H. Rock). H. amarum, thrives in dry upland pastures and low-lying grassy and sandy habitat in the mid-Atlantic (USA), where it persists despite storm-driven standing water. Helenium amarum is a species that is toxic to livestock and has been found outside its native range. Temperature and light impacts on germination are already known, but the role of water availability and potential ameliorating effects of mycorrhizae during water stress have …

Evolutionary Origins Of Secondary Growth - The Periderm Perspective: Integrating Evidence From Fossils And Living Plants, Madison A.K. Lalica

Cal Poly Humboldt theses and projects

Periderm is a structural feature with roles in protection of inner plant tissues and wound healing. Knowledge of periderm occurrences in the fossil record and living lineages outside the seed plants is limited and its evolutionary origins remain poorly explored. Here, I review the known taxonomic distribution of canonical periderm (typical ontogenetic stage) and wound periderm (self-repair mechanism). To this sparse body of data I add new observations and experiments on living plant lineages and new occurrences from the fossil record. One of the latter, documented in the new early euphyllophyte species Nebuloxyla mikmaqiana, joins the oldest known periderm …

Assessing Relocation Habitats And Assisted Migration Of The Lassics Lupine, An Endangered California Serpentine-Endemic, Caitlyn M. Allchin

Cal Poly Humboldt theses and projects

The Lassics lupine, Lupinus constancei, is a serpentine species endemic to the Lassics Mountains of northern California, listed as critically imperiled and federally endangered. Increased encroachment from reduced fire intervals has led to elevated herbivory from small mammals. While deployment of exclosure cages has decreased negative impacts, diminishing snowpack from shifting climate continues to threaten the Lassics lupine. To locate possible refugia, I evaluated alternative sites for assisted migration. I built a habitat suitability model (HSM) using MaxEnt software and WorldClim variables to predict optimal habitat. I then evaluated aerial imagery, topography, and geology to identify areas for microhabitat …

Characterizing New Plant Fossils With Woody Growth From The Battery Point Formation Of Quebec (Canada), Emma T. Casselman

Cal Poly Humboldt theses and projects

The oldest woody growth has been recognized in several Early Devonian (ca. 410-395 Ma) euphyllophytes. Their taxonomic diversity is difficult to evaluate due to a lack of quantitative methods for comparing plants based on secondary xylem anatomy. In turn, this hinders understanding of their implications for the evolution of plant development. To develop metrics that quantify secondary xylem anatomy and allow for conclusive comparisons, I investigated extant taxa and Early Devonian fossil woody taxa. I developed multiple metrics for quantifying tracheid size as a function of position in the secondary xylem and tested them on a dataset of extant gymnosperms. …

Pioneering Plant Metabolomic Library Of Indonesian Plants For Research, Conservation, Capacity Building And Economic Development, Isabel Armas, Ernawati Sinaga, Nonon Saribanon, Noverita, Alvira Noer Effendi, Chairil Rohadi, Hanifa Nur Adilah, Vyacheslav Dushenkov, Ilya Raskin

Publications and Research

Indonesia, one of the world’s most biodiverse countries, is undergoing mass deforestation, exacerbating climate change and leading to accelerated loss of species. This project addressed the urgent need to conserve endangered Indonesian biodiversity. Specifically, the potentially life-saving bioactive compounds harbored within its plants. A group of Indonesian researchers from Universitas Nasional (UNAS) in Jakarta received training in RApid Metabolome Extraction and Storage (RAMES) technology, an ethical, low-impact, field-deployable and cost-effective methodology developed by Rutgers University. The team of Indonesian scientists used this technology to create the first metabolomic library of Indonesian plant species and an easily transportable collection containing 501 …

Revegetation Of Two Drained Reservoirs On The Elwha River Ten Years After Dam Removal, Michael Trier

EWU Masters Thesis Collection

The Elwha and Glines Canyon dams on the Elwha River, Washington, USA were removed between 2011 and 2014 after being in place for a century, and at the time were the largest dams ever removed. The resulting dewatering of Lake Aldwell, the reservoir of the Elwha dam, and Lake Mills, the reservoir of the Glines Canyon dam exposed over 270 hectares of land that had been submerged. While several studies have examined the revegetation of these drained reservoirs, none have gone beyond 5 years since dam removal. These studies found that sediment grain size and reservoir landform (valley walls, terraces …