Botany Commons^™

Responses Of Soil Surface Greenhouse Gas Emissions To Nitrogen And Sulfur Fertilizer Rates To Brassica Carinata Grown As A Bio-Jet Fuel, Dwarika Bhattarai, Gandura O. Abagandura, Thandiwe Nleya, Sandeep Kumar

Department of Agronomy and Horticulture: Faculty Publications

Carinata (Brassica carinata A. Braun), a non-food oilseed crop and an alternative bio-jet fuel feedstock, has received attention for its potential as a low-input option for production in the semi-arid region of the Northern Great Plains of the United States. Research addressing the impacts of nitrogen (N) and sulfur (S) fertilizers on soils and greenhouse gas (GHG; CO2, N2O, and CH4) emissions from carinata production are limited. Thus, objective of this study was to evaluate the impact of different rates of N and S fertilizers applied to carinata on soil properties and GHG emissions. Field experiments were conducted in 2017 …

Household Smoke-Exposure Risks Associated With Cooking Fuels And Cooking Places In Tanzania: A Cross-Sectional Analysis Of Demographic And Health Survey Data, Mazbahul G. Ahamad, Fahian Tanin, Nawaraji Shrestha

Department of Agronomy and Horticulture: Faculty Publications

Household smoke-exposure risk (SER) can be defined through the assessment of cooking fuels (smoke and no smoke-producing) and cooking places (indoor and outdoor) related information, which represent different levels of household air pollution. This study aimed to explore the prevalence and geographical variations in smoke-exposure risks (SERs) associated with indoor and outdoor cooking practices and use of smoke-producing and non-smoke-producing cooking fuels in Tanzania. We further investigated the social and spatial features associated with household SERs. We defined an indicator variable, the household SER, using country-level, cross-sectional data on cooking fuels and cooking places obtained from the 2015–2016 Tanzania Demographic …

Officially Confirmed Covid-19 And Unreported Covid-19–Like Illness Death Counts: An Assessment Of Reporting Discrepancy In Bangladesh, Mazbahul G. Ahamad, Fahian Tanin, Byomkesh Talukder, Monir Ahmed

Department of Agronomy and Horticulture: Faculty Publications

Reporting discrepancies between officially confirmed COVID-19 death counts and unreported COVID- 19–like illness (CLI) death counts have been evident across the world, including Bangladesh. Publicly available data were used to explore the differences between confirmed COVID-19 death counts and deaths with possible COVID-19 symptoms between March 2, 2020 and August 22, 2020. Unreported CLI death counts totaled more than half of the confirmed COVID-19 death counts during the study period. However, the reporting authority did not consider CLI deaths, which might produce incomplete and unreliable COVID-19 data and respective mortality rates. All deaths with possible COVID-19 symptoms need to be …

Soil Erosion Modelling: A Global Review And Statistical Analysis, Pasquale Borrelli, Panos Panagos, Dinesh Panday, 64 More Co-Authors

Department of Agronomy and Horticulture: Faculty Publications

To gain a better understanding of the global application of soil erosion prediction models, we comprehensively reviewed relevant peer-reviewed research literature on soil-erosion modelling published between 1994 and 2017.We aimed to identify (i) the processes and models most frequently addressed in the literature, (ii) the regions within which models are primarily applied, (iii) the regions which remain unaddressed and why, and (iv) how frequently studies are conducted to validate/evaluate model outcomes relative to measured data. To perform this task, we combined the collective knowledge of 67 soil-erosion scientists from 25 countries. The resulting database, named ‘Global Applications of Soil Erosion …

Potential Amendments For Improving Productivity Of Low Carbon Semiarid Soil, Bijesh Maharjan, Dinesh Panday, Humberto Blanco-Canqui, Maysoon M. Mikha

Department of Agronomy and Horticulture: Faculty Publications

Applying soil amendments with high C content can potentially improve soil properties and increase crop yields. The objective of this 3-yr field study was to evaluate the effects of organic amendments on soil organic C (SOC), chemical properties, crop nutrient uptake, and crop yields in a low C sandy loam soil near Scottsbluff, NE. The field was planted to dry bean (Phaseolus vulgaris L.) in 2017, maize (Zea mays L.) in 2018, and sugar beet (Beta vulgaris L.) in 2019. Char at 22.3, 44.6, 66.9, 89.2, and 133.8 Mg ha^–1; biochar at 5.6 and 11.2 …

Loss Of Comt Activity Reduces Lateral Root Formation And Alters The Response To Water Limitation In Sorghum Brown Midrib (Bmr) 12 Mutant, Manny Saluja, Feiyu Zhu, Hongfeng Yu, Harkamal Walia, Scott E. Sattler

Department of Agronomy and Horticulture: Faculty Publications

Lignin is a key target for modifying lignocellulosic biomass for efficient biofuel production. Brown midrib 12 (bmr12) encodes the sorghum caffeic acid O-methyltransferase (COMT) and is one of the key enzymes in monolignol biosynthesis. Loss of function mutations in COMT reduces syringyl (S) lignin subunits and improves biofuel conversion rate. Although lignin plays an important role in maintaining cell wall integrity of xylem vessels, physiological and molecular consequences due to loss of COMT on root growth and adaptation to water deficit remain unexplored.

We addressed this gap by evaluating the root morphology, anatomy and transcriptome of bmr12 mutant. The mutant …

Improving Publicly Available Corn Nitrogen Rate Recommendation Tools With Soil And Weather Measurements, Curtis J. Ransom, Newell R. Kitchen, John E. Sawyer, James J. Camberato, Paul R. Carter, Richard Ferguson, Fabián G. Fernández, David W. Franzen, Carrie A.M. Laboski, D. Brenton Myers, Emerson D. Nafziger, John F. Shanahan

Department of Agronomy and Horticulture: Faculty Publications

Improving corn (Zea mays L.) N fertilizer rate recommendation tools is necessary for improving farmers’ profits and minimizing N pollution. Research has repeatedly shown that weather and soil factors influence available N and crop N need. Adjusting available corn N recommendation tools with soil and weather measurements could improve farmers’ ability to manage N. The aim of this research was to improve publicly available N recommendation tools with site-specific soil and weather measurements. Information from49 site-years ofNresponse trials in theU.S. Midwest was used to evaluate 21 rate recommendation tools for a single (at-planting) and split (at-planting + sidedress) N …

Adaptation And Forage Productivity Of Cool-Season Grasses In The Central Usa, Kenneth P. Vogel, Robert B. Mitchell

Department of Agronomy and Horticulture: Faculty Publications

Cool-season grass species (18) and cultivars (85) were evaluated for use in seeded grasslands in the tallgrass prairie and shortgrass steppe ecoregions of the central United States at the test locations of Ithaca and Sidney, NE, respectively. Both native and introduced grasses were evaluated in sward trails. Significant differences existed among species and cultivars for all traits evaluated except for in vitro dry matter digestibility (IVDMD) among cultivars within species at Sidney. The grasses that had the best establishment, persistence, and forage yields in the Ithaca trial were introduced wheatgrass (Thinopyrum) and bromegrass (Bromus) species. At …

Identification And Utilization Of Genetic Determinants Of Trait Measurement Errors In Image-Based, High-Throughput Phenotyping, Yan Zhou, Aaron Kusmec, Seyed Vahid Mirnezami, Lakshmi Attigala, Srikant Srinivasan, Talukder Zaki Jubery, James Schnable, Maria G. Salas Fernandez, Baskar Ganapathysubramanian, Patrick S. Schnable

Department of Agronomy and Horticulture: Faculty Publications

The accuracy of trait measurements greatly affects the quality of genetic analyses. During automated phenotyping, trait measurement errors, i.e., differences between automatically extracted trait values and ground truth, are often treated as random effects that can be controlled by increasing population sizes and/or replication number. By contrast, there is some evidence that trait measurement errors may be partially under genetic control. Consistent with this hypothesis, we observed substantial non-random, genetic contributions to trait measurement errors for five maize (Zea mays) tassel traits collected using an image-based phenotyping platform. The phenotyping accuracy varied according to whether a tassel exhibited …

Investigation Into The Genetic Provenance Of Three Rare Plants With East-West Disjunction Patterns In Pennsylvania., Scott Schuette, Christopher T. Martine

Other Faculty Research and Publications

Rare plant conservation relies on an understanding of the natural history, biology and ecology, and real and potential threats to their populations to inform state regulations that serve to protect the species from extirpation. This work often involves extensive field surveys over several years to determine population sizes and whether those populations are seeing reductions in number of individuals necessary to maintain the genetic diversity within and between those populations. Species and populations with high genetic diversity are better equipped to withstand sudden changes to their habitats that derive from land use changes and changing climate. There are a variety …

Plant Species Identification In The Wild Based On Images Of Organs, Meghana Kovur

Graduate Theses, Dissertations, and Problem Reports (ETD)

Image-based plant species identification in the wild is a difficult problem for several reasons. First, the input data is subject to a very high degree of variability because it is captured under fully unconstrained conditions. The same plant species may look very different in different images, while different species can often appear very similar, challenging even the recognition skills of human experts in the field. The large intra-class and small inter-class image variability makes this a fine-grained visual classification problem. One way to cope with this variability and to reduce image background noise is to predict species based on the …

Arkansas Corn And Grain Sorghum Performance Tests 2020, J. F. Carlin, R. D. Bond, R. B. Morgan

Arkansas Agricultural Experiment Station Research Series

Corn and grain sorghum performance tests are conducted each year in Arkansas by the University of Arkansas System Division of Agriculture. The tests provide information to companies marketing seed within the state and aid the Arkansas Cooperative Extension Service in formulating recommendations for producers.

The 2020 corn performance tests contained 85 hybrids and were conducted at the Northeast Research and Extension Center (NEREC) at Keiser, the Lon Mann Cotton Research Station (LMCRS) near Marianna, the Bell Farming Company (BFC) near Des Arc, the Pine Tree Research Station (PTRS) near Colt, the Rohwer Research Station (RRS) near Rohwer, and the Rice …

Arkansas Soybean Performance Tests 2020, J. F. Carlin, R. D. Bond, R. B. Morgan

Arkansas Agricultural Experiment Station Research Series

Soybean variety and strain performance tests are conducted each year in Arkansas by the University of Arkansas System Division of Agriculture’s Arkansas Crop Variety Improvement Program. The tests provide information to companies developing varieties and/or marketing seed within the State, and aid the Arkansas Cooperative Extension Service in formulating variety recommendations for soybean producers.

Achene Micromorphology Of The Genus Potentilla L. (Rosaceae) In Iran And Its Systematicapplication, Samira Sadeghi, Marzieh Beygom Faghir, Farideh Attar, Ali Alaami

Turkish Journal of Botany

Achene micromorphological evidence belonging to 32 species of Potentilla from Iran were studied using scanning electron microscopy (SEM). Multivariate analysis was used to estimate the potential contribution of the quantitative and qualitative traits to the species relationships. Based on the present results, the achene micromorphological traits exhibited considerable variations. The SEM observations revealed 4 types of achene shapes, 4 main types and 6 sub types of surface patterns, 3 types of wax, 8 types, 15 subtypes, and 4 categories of sculpturing, 2 types of anticlinal cell boundaries, and 3 types of outer periclinal walls. In addition, the results demonstrated variations …

New Additions To Turkish Mycota From Ankara, Balıkesir, And Kütahya Provinces, Deni̇z Altuntaş, Fuat Bozok, Hatira Taşkin, Şanli Kabaktepe, Hakan Alli, Ilgaz Akata

Turkish Journal of Botany

The current research was conducted on the fungal materials collected from Ankara, Balıkesir, and Kütahya provinces between 2015 and 2019. As a result of the field and laboratory studies, Conocybe dentatomarginata, Entoloma lampropus, Lactarius lilacinus, Otidea nannfeldtii and Sarcopeziza sicula are reported for the first time from Turkey based on macro- and micromorphological studies and internal transcribed spacer (ITS) rDNA-based molecular phylogeny. Descriptions of new records are provided together with photos showing their macro and micro-morphology.

Nomenclatural Adjustments For Hybrids Of The Former Inula L. Within Pentanema Cass.(Asteraceae), Alexey P. Seregin

Turkish Journal of Botany

Drastic recircumscription of Pentanema (Asteraceae) has resulted in transfers of many species from Inula, whereas hybrids with binomials have not received new combinations yet. However, names for interspecific hybrids of Inula auct. are in active current use, and a dozen nothospecies are regularly mentioned in floras, checklists, and research papers. I have facilitated 12 new combinations for nothospecies in Pentanema: P. ×adriaticum (Borbás) Seregin (P. hirtum × P. spiraeifolium), P. ×haussmannii (Huter) Seregin (P. ensifolium × P. hirtum), P. ×hispidum (Schur) Seregin (P. asperum × P. hirtum), P. ×hybridum (Baumg.) Seregin (P. ensifolium × P. germanicum), P. ×litorale (Borbás) Seregin …

Genetic Structure, Differentiation, And Slight Evidence For No Selective Neutrality Of Some Ssr Markers In Populations Of Medicago Ciliaris (L.) Krock And Medicago Intertexta (L.)Mill Species, Fella Abdous, Fatima Zohra Fyad-Lameche

Turkish Journal of Botany

Medicago ciliaris (L.) Krock and Medicago intertexta (L.) Mill are most often found in saline regions and are considered as potential resources for genes related to salinity resistance. To explore the genetic diversity of these two species by mean of nrSSR (simplesequence repeats) markers, 11 accessions originated from different regions in north of Africa and Middle East were chosen. Ten among 14 markers turned out to be polymorphic and gave 72 alleles. Eight markers were very informative with PIC values > 0.5, and three of them were found to be nonneutral. Allelic richness was limited with an average number of alleles …

Effect Of Ash Carbon Nanofibers On Gaba Shunt Pathway In Germinating Seeds Of Tomato (Lycopersicon Esculentum Mill., C.V. Rohaba.) Under Salt Stress, Nisreen Alquraan, Mohammed Al-Omari, Alaa Ayoub

Turkish Journal of Botany

The aim of the current study was to examine the effect of black ash carbon nanofibers (CNFs) on gamma-aminobutyric acid (GABA) shunt pathway in germinating seeds of tomato (Lycopersicon esculentum Mill., c.v. Rohaba) under salt stress. Seed?s germination pattern, seed moisture content, GABA shunt metabolite levels (GABA, Glutamate and Alanine), total proteins and total carbohydrates, and the level of oxidative damage in response to sodium chloride (NaCl) treatments were determined. A significant increase of moisture content in CNFs treated seeds associated with significant increases in germination percentage was found. Data also showed a significant increase in GABA shunt metabolites in …

Water Conservation Strategies Through Anatomical Traits In The Endangered Arid Zone Species Salvadora Oleoides Decne., Ummar Iqbal, Mansoor Hameed, Farooq Ahmad

Turkish Journal of Botany

Salvadora oleoides Decne. (Salvadoraceae) is a facultative and mesomorphic xerophyte, well adapted to arid and semi-arid regions. Twelve populations were selected from different ecological regions of Punjab to investigate structural modifications that are essential for water conservation, by either improving water-storing capacity or preventing water loss from the plant body, hence, enabling this species to cope with environmental extremities. We observed significant plasticity in structural features, which ensures ecological success in a variety of environmental conditions. Huge variation was seen in various tissue systems, i.e., epidermis and epidermal appendages, collenchyma, size of internal oil glands, storage parenchyma, shape, size and …

Forage Potential Of Salsola Species In Arid-Saline Rangelands, Hadi Pirasteh-Anosheh, Ali Mirhosseini, Nudrat Aisha Akram, Mirza Hasanuzzaman

Turkish Journal of Botany

We investigated the forage potential of 12 Salsola species including S. arbuscula, S. abarghuensis, S. dendroides, S. crassa, S. imbricata, S. incanescens, S. nitraria, S. kerneri, S. orientalis, S. richteri, S. tomentosa, and S. yazdiana in the Southern rangelands of the Great Salt Desert. The results showed a great significant variation among forage quality and quantity of the Salsola species. The greatest fresh and dry forages were obtained in S. yazdiana (4.54 and 1.53 kg m?2, respectively) followed by S. dendroides (3.02 and 1.13 kg m?2, respectively). The S. tomentosa had the greatest ash content by 20.2%, which significantly was …

Applications Of Crispr/Cas9-Based Genome Editing In The Plant Biology, Yingzhuan Zheng, Qianqian Li, Mingwang Ye, Aie Cehn, Hongyang Wang

Turkish Journal of Botany

Clustered regularly interspaced short palindromic repeats/CRISPR-associated proteins (CRISPR/Cas) is an acquired immune system found in bacteria and archaea that can specifically silence or degrade a foreign single or double strand nucleic acid to protect it from infection. In recent years, the CRISPR/Cas9 system has rapidly been evolved into a genome editing technology, in which the Cas9 endonuclease can be targeted to specific DNA sequences by guide RNAs (gRNAs) that are easily programmable. Due to simplicity, specificity and high efficiency, CRISPR/Cas9 is gradually replacing other gene editing technologies and has been implemented in basic and applied plant sciences to boost yield, …

Genetic Variation And Population Differentiation Of Dorystaechas Hastata Toturkey: Implications For Conservation Management, Ceren Seli̇m, Songül Sever Mutlu, Nedi̇m Mutlu, İsmai̇l Gökhan Deni̇z, Hasan Meydan

Turkish Journal of Botany

Dorystaechas hastata is a relict endemic medicinal and aromatic plant under risk of extinction. Assessment of genetic diversity and association between geographic distribution and genetic variation could benefit to the conservation efforts. The objectives of this study were to assess genetic diversity and population differentiation of the species in its natural habitat. The genetic structure of 56 accessions sampled from 15 populations encompassing whole natural distribution of the species were analyzed with both sequencerelated amplified polymorphism (SRAP) and inter-primer binding site (iPBS) molecular markers. The 146 polymorphic markers were generated by 13 SRAP and 11 iPBS primers. The similarity of …

Evaluation Of Bermudagrass [Cynodon (L.) Rich] Accessions With Different Ploidy Levels, Cansu Bülbül, Songül Sever Mutlu, Nedi̇m Mutlu, Osman Gülşen

Turkish Journal of Botany

Eastern Mediterranean is considered as a center of diversity of

A New Teucrium L. (Lamiaceae) Species From South Anatolia (Turkey), Ömer Çeçen, Taner Özcan

Turkish Journal of Botany

In this study, a member of sect. Teucrium, hitherto undescribed as a new species, was analyzed based on morphological and micromorphological features and molecular findings. The closest species of the new species were defined according to leaf morphology via morphological characters. Leaf, stem, and nutlet trichome types were obtained and compared with resembling species. Moreover, two different DNA region sequences were used to evaluate its proper phylogenetic position in the section. The new species was described as Teucrium turcicum Çeçen & Özcan based on the results of using different approaches. According to our observations, flower color, leaf structure, and shape …

A New Species Of Foliicolous Lichenized Fungi From Southwest China: Calopadia Ruiliensissp. Nov., Hai-Xia Wu, Wei-Bin Ren, Xin-Hao Li, Zi-Xiang Yang

Turkish Journal of Botany

Calopadia ruiliensis, found on living leaves in southwest China, is described as a new species, based on morphology and phylogenetic analysis. It is characterized by a foliicolous thallus with yellow greenish to creamy yellow color, rounded apothecia with nonpruinose to thinly pruinose disc, a dark olive-green hypothecium and black-brown subhymenium, and 1-spored asci producing muriform ascospores. Phylogenetic analysis of LSU sequence data shows that the new species clusters in the genus Calopadia with high bootstrap support. The new species is compared with closely related and similar species of Calopadia and a comprehensive description and micrographs are provided.

Metabolite Profiling, Distribution Of Secretory Structures, And Histochemistry Incurculigo Orchioides Gaertn. And Curculigo Latifolia Dryand. Ex W.T.Aiton, Abdul Halim Umar, Diah Ratnadewi, Mohamad Rafi, Yohana C. Sulistyaningsih, Hamim Hamim

Turkish Journal of Botany

Curculigo orchioides and Curculigo latifolia (Hypoxidaceae) have been widely used as traditional medicines in Indonesia and other Asian countries for antihyperglycemic, aphrodisiac, antioxidant, and antimicrobial treatments. This work aimed to determine the distribution of secretory structures and metabolites. Metabolite profiling approach of the plant organs was determined by UHPLC-QOrbitrap-HRMS. Histochemical-based techniques on rhizome, root, petiole, and leaf, with transversal sections on fresh samples, were prepared using a razor blade to determine the secretory structures of the plants, followed by plant anatomy procedures. Histochemical analysis was carried out using several reagents to detect the metabolites. Metabolite profiling revealed several classes of …

Running Sigmas Analysis Of Sampled Molecular Paraphyly In Pottiaceae (Bryophyta), Richard Zander

Turkish Journal of Botany

A spreadsheet dealing with standard deviations allows statistical examination of continuous variables associated with paraphyly in systematics, with examples in the Pottiaceae (Bryophyta). Outlier values in taxonomic representation of distribution with the structure of (w-)x-y(-z) of continuous variables can be empirically supported. The use of the geometric mean and intuitional estimation is reexamined. Published reports of the distance between maximally distant exemplars of individual paraphyletic species in molecular cladograms in several studies were reevaluated as metadata. Levels of standard deviations were assigned with the Running Sigmas spreadsheet. A spike in width of exemplars of a paraphyletic species of a moss …

Ecological Assessment Of Burç Reservoir's Surface Water (Turkey) Using Phytoplanktonmetrics And Multivariate Approach, Abuzer Çelekli̇, Gülümser Özpinar

Turkish Journal of Botany

The present study aimed to elucidate relationships between phytoplankton species and stressors using multivariate approaches and assess the environmental condition of Burç Reservoir?s surface water using phytoplankton metrics from September 2018 to August 2019 according to implementations of the Water Framework Directive. Burç Reservoir had a characteristic of a warm monomictic pattern. Phytoplankton functional groups (E, F, J, LO, LM, MP , P, S1 , T, and W1 ) were found in the reservoir. A significant difference was found in total biovolume values changed from 2.28 mm3 /L in November 2018 to 0.51 mm3 /L in February 2019. The first …

Using A Supermatrix Approach To Explore Phylogenetic Relationships, Divergence Times,And Historical Biogeography Of Saxifragales, Cara Tarullo, Jeffrey Rose, Kenneth Sytsma, Bryan T. Drew

Turkish Journal of Botany

The Saxifragales is a morphologically and ecologically diverse clade of flowering plants with a cosmopolitan distribution. Although families and genera within the order exhibit classic biogeographical disjunctions, no studies to date have rigorously examined and described its historical biogeography. Here, we analyze the historical biogeography of Saxifragales by first generating a new chronogram for the order using a supermatrix approach, based on 61 loci from 251 representative members of Saxifragales. Our results suggest that Saxifragales originated in the early Albian approximately 107 Ma and diversified rapidly in the next 15 Ma, with all stem lineages of extant families present by …

The Trade-Off Between Uvb Sensitivity And Tolerance Against Other Stresses In African Ricespecies, Gideon Sadikiel Mmbando, Jun Hidema

Turkish Journal of Botany

Climate change and ozone depletion have caused increased ultraviolet B (UVB; 280-315nm) radiation levels on earth, which has been predicted to cause decreased growth and yield of various crops, including rice, the most important staple food worldwide. UVB radiation sensitivity varies extensively in Asian rice (Oryza sativa L.) and African rice (Oryza glaberrima Steud. and Oryza barthii A. Chev.) cultivars, and the activity of cyclobutane pyrimidine dimer (CPD) photolyase that repairs UVB-induced CPD is an essential factor underlying UVB sensitivity in rice. Unlike Asian varieties, African rice possesses different origins, and it is cultivated in the African continent under environmental …