Botany Commons^™

An Illustrated Survey On The Morphological Characters In Three Species Of The Diatom Genus Mastogloia (Bacillariophyceae), Fatma Sabanci

Turkish Journal of Botany

The valve morphology of Mastogloia braunii Grunow, Mastogloia pumila Cleve, and Mastogloia vasta Hustedt were investigated using field material. Specimens for study were collected from Homa Lagoon, İzmir Bay, Turkey (4-29 °C; salinity 35%o-54%o) as epipelic and epiphytic (Ulva lactuca L.). The valve morphological characteristics of the 3 species were measured by calibrated ocular micrometer using 20 specimens from each species per station. The valve of M. braunii was 35.15-80.20 µm in length and 12.35-19.85 µm in width, the valve of M. pumila was 13.70-31.85 µm in length and 5.75-9.00 µm in width, and the valve of M. vasta was …

Biological Effects Of Copper On Prosopis Pubescens (Screw Bean Mesquite), Marian Nicte Zappala

Open Access Theses & Dissertations

Phytoremediation is an emerging technology for cleaning industrial and urban contamination (Peuke and Rennenberg, 2005). Many factors including germination rate, biomass changes, biochemical changes, and nutrient changes must be determined in order to utilize a plant for phytoremediation. Our results showed that Prosopis pubescens (Screw bean mesquite) is a hyperaccumulator of copper from copper sulfate and a feasible option to remediate fields with up to 200 ppm of copper sulfate.

Screw bean mesquite seeds are viable even after 30 years of storage. Both copper sulfate and copper nitrate decreased the germination rate of screw bean mesquite seeds. In soil grown …

Inheritance Of Grain Polyphenol Oxidase (Ppo) Activity In Multiple Wheat (Triticum Aestivum L.) Genetic Backgrounds, Somrudee Nilthong, Robert A. Graybosch, P. Stephen Baenziger

Department of Agronomy and Horticulture: Faculty Publications

Grain polyphenol oxidase (PPO) activity can cause discoloration of wheat (Triticum aestivum L.) food products. Five crosses (PI 117635/Antelope; Fielder/ NW03681; Fielder/Antelope; NW07OR1070/Antelope; NW07OR1066/OR2050272H) were selected to study the genetic inheritance of PPO activity. STS markers, PPO18, PPO29 and STS01, were used to identify lines with putative alleles at the Ppo-A1 and Ppo-D1 loci conditioning low or high PPO activity. ANOVA showed significant genotypic effects on PPO activity (P\0.0001) in all populations. The generations and generation 9 genotype effects were not significant in any population. A putative third (null) genotype at Ppo-A1 (no PCR fragments for PPO18) was discovered …

Identification And Characterization Of Four Missense Mutations In Brown Midrib 12 (Bmr12), The Caffeic O-Methyltranferase (Comt) Of Sorghum, Scott E. Sattler, Nathan A. Palmer, Ana Saballos, Ann M. Greene, Zhanguo Xin, Gautam Sarath, Wilfred Vermerris, Jeffrey F. Pedersen

Department of Agronomy and Horticulture: Faculty Publications

Modifying lignin content and composition are targets to improve bioenergy crops for cellulosic conversion to biofuels. In sorghum and other C4 grasses, the brown midrib mutants have been shown to reduce lignin content and alter its composition. Bmr12 encodes the sorghum caffeic O-methyltransferase, which catalyzes the penultimate step in monolignol biosynthesis. From an EMS-mutagenized TILLING population, four bmr12 mutants were isolated. DNA sequencing identified the four missense mutations in the Bmr12 coding region, which changed evolutionarily conserved amino acids Ala71Val, Pro150Leu, Gly225Asp, and Gly325Ser. The previously characterized bmr12 mutants all contain premature stop codons. These newly identified mutants, along …

Cultivating A Movement: Excerpts From An Oral History Of Organic Farming And Sustainable Agriculture On California’S Central Coast [Book Review], Charles A. Francis

Department of Agronomy and Horticulture: Faculty Publications

Edited by I. Reti and S. Rabkin, 2011. University of California, Santa Cruz, Library, Santa Cruz, California, United States. 299 p., US$19.95, ISBN 9-780972-33431, paper.

Often the most compelling evidence for success of organic farming comes from the personal stories of farmers. Coupled with reports on the application of science in organics, the practical knowledge of people in the field provides a rich foundation for the ongoing growth of this intriguing sector of the food system. This collection of interviews by the staff of the Regional History Project is one unique activity of the University of California, Santa Cruz library, …

Estimating Construction Costs For A Low-Cost Quonset-Style Greenhouse, David P. Lambe, Stacy A. Adams, Ellen T. Paparozzi

Department of Agronomy and Horticulture: Faculty Publications

Double polyethylene Quonset-style greenhouses offergrowers and farmers a more cost-effective structure than glass- or acrylic-covered structures for growing plants off-season. These greenhouses are especially applicablefor producing off-season high value crops such as fruits and vegetables for local markets. To support this production alternative, this publication contains a list of greenhouse components, the start-up costs associated with these items and an estimate of the number of person hours required to assemble and outfit a 24-foot-by-72-foot double polyethylene, air-inflated greenhouse structure. As there are many options available for building double polyethylene greenhouses, the main purpose of this publication is to identify the …

The ‘Pi 438489b’ By ‘Hamilton’ Snp-Based Genetic Linkage Map Of Soybean [Glycine Max (L.) Merr.] Identified Quantitative Trait Loci That Underlie Seedling Sds Resistance, Kassem My Abdelmajid, Laura Ramos, Leonor Leandro, Gladys Mbofung, D. L. Hyten, Stella K. Kantartzi, Robert L. Grier Iv, Victor N. Njiti, Khalid Meksem

Department of Agronomy and Horticulture: Faculty Publications

Soybeans [Glycine max (L.) Merr.] are susceptible to many diseases including fungal diseases such as soybean sudden death syndrome (SDS). Several studies reported SDS resistance quantitative trait loci (QTL) on the soybean genome using different recombinant inbred line (RIL) populations and low density genetic linkage maps. High density exclusively single nucleotide polymorphisms-based (SNP-based) maps were not yet reported in soybean. The objectives of this study were (1) to construct a high density SNP-based genetic linkage map of soybean using the ‘PI438489B’ by ‘Hamilton’ (PIxH, n=50) recombinant inbred line population, and (2) to map QTL for SDS resistance using this …

Structural Variants In The Soybean Genome Localize To Clusters Of Biotic Stress-Response Genes, Leah K. Mchale, William J. Haun, Wayne W. Xu, Pudota B. Bhaskar, Justin E. Anderson, D. L. Hyten, Daniel J. Gerhardt, Jeffrey A. Jeddeloh, Robert M. Stupar

Department of Agronomy and Horticulture: Faculty Publications

Genome-wide structural and gene content variations are hypothesized to drive important phenotypic variation within a species. Structural and gene content variations were assessed among four soybean (Glycine max) genotypes using array hybridization and targeted resequencing. Many chromosomes exhibited relatively low rates of structural variation (SV) among genotypes. However, several regions exhibited both copy number and presence-absence variation, the most prominent found on chromosomes 3, 6, 7, 16, and 18. Interestingly, the regions most enriched for SV were specifically localized to gene-rich regions that harbor clustered multigene families. The most abundant classes of gene families associated with these regions …

Identification Of Positive Yield Qtl Alleles From Exotic Soybean Germplasm In Two Backcross Populations, K.-S. Kim, B. W. Diers, D. L. Hyten, M. A. Rouf Mian, J. G. Shannon, R. L. Nelson

Department of Agronomy and Horticulture: Faculty Publications

Increasing seed yield is an important breeding goal of soybean [Glycine max (L.) Merr.] improvement efforts. Due to the small number of ancestors and subsequent breeding and selection, the genetic base of current soybean cultivars in North America is narrow. The objective of this study was to map quantitative trait loci (QTL) in two backcross populations developed using soybean plant introductions as donor parents. The first population included 116 BC₂F₃-derived lines developed using ‘‘Elgin’’ as the recurrent parent and PI 436684 as the donor parent (E population). The second population included 93 BC₃F …

Molecular Mapping Of Soybean Rust Resistance In Soybean Accession Pi 561356 And Snp Haplotype Analysis Of The Rpp1 Region In Diverse Germplasm, Ki-Seung Kim, Jair R. Unfried, D. L. Hyten, Reid D. Frederick, Glen L. Hartman, Randall L. Nelson, Qijian Song, Brian W. Diers

Department of Agronomy and Horticulture: Faculty Publications

Soybean rust (SBR), caused by Phakopsora pachyrhizi Sydow, is one of the most economically important and destructive diseases of soybean [Glycine max (L.) Merr.] and the discovery of novel SBR resistance genes is needed because of virulence diversity in the pathogen. The objectives of this research were to map SBR resistance in plant introduction (PI) 561356 and to identify single nucleotide polymorphism (SNP) haplotypes within the region on soybean chromosome 18 where the SBR resistance gene Rpp1 maps. One-hundred F_2:3 lines derived from a cross between PI 561356 and the susceptible experimental line LD02-4485 were genotyped with genetic …

Advances In Genome Sequencing And Genotyping Technology For Soybean Diversity Analysis, David L. Hyten

Department of Agronomy and Horticulture: Faculty Publications

The completion of a soybean draft whole genome sequence along with advances in sequencing and genotyping technologies are creating a revolution in soybean genomics. The draft whole genome sequence of soybean is allowing researchers to fully take advantage of this new technology and is rapidly changing how soybean germ plasm is mined. Genetic markers such as SNPs can be quickly identified by using next generation sequencing and assayed on a large number of materials using advanced technologies that can genotype tens of thousands of markers on thousands of individuals very rapidly. This ability to qUickly identify and genotype genetic diversity …

High-Resolution Mapping Of Open Chromatin In The Rice Genome, Wenli Zhang, Yufeng Wu, James C. Schnable, Zixian Zeng, Michael Freeling, Gregory E. Crawford, Jiming Jiang

Department of Agronomy and Horticulture: Faculty Publications

Gene expression is controlled by the complex interaction of transcription factors binding to promoters and other regulatory DNA elements. One common characteristic of the genomic regions associated with regulatory proteins is a pronounced sensitivity to DNase I digestion. We generated genome-wide high-resolution maps of DNase I hypersensitive (DH) sites from both seedling and callus tissues of rice (Oryza sativa). Approximately 25% of the DH sites from both tissues were found in putative promoters, indicating that the vast majority of the gene regulatory elements in rice are not located in promoter regions. We found 58% more DH sites in …

2012 Wildflower Of The Year: Partridge Berry, Mitchella Repens, W. John Hayden

Biology Faculty Publications

Although partridge berry is a small and creeping herb, its jewel-like beauty rewards attentive naturalists year-round.

Light Management Important Factor For Partridge Berry, W. John Hayden

Biology Faculty Publications

Factors essential for plant life include adequate levels of light, moisture, mineral nutrients, and temperature; though the list is small, each is crucial for survival. This article is a contemplation of how one of these critical factors, light, impacts the biology of our 2012 Wildflower of the Year, Mitchella repens, partridge berry. Aside from issues of reproductive biology, ecological literature on partridge berry is meager. Consequently most of what follows is derived from general works on woodland ecology, perusal of which provides sufficient insight about the biology of Mitchella to inspire ideas worthy of further study.

A New Species Of Eryngium (Apiaceae) From Turkey: Eryngium Babadaghensis, Gülay Ecevi̇t Genç, Emi̇ne Akalin Uruşak, Arno Wörz

Turkish Journal of Botany

Eryngium babadaghensis G.Ecevit-Genç, E.Akalın & A.Wörz sp. nova (Apiaceae, Saniculoideae) is described as a new species from the Babadağ (Fethiye-Muğla) in south-west Turkey. The new species is closely related to E. kotschyi Boiss., which is endemic to Turkey. A Latin diagnosis; taxonomic descriptions; photos of the holotype, fruit, and transverse sections of the basal leaves, peduncles, and fruits; and scanning electron microscope (SEM) images of the calyx and surface of the scales on the mericarp of the new species are presented. The geographical distribution of the new species and E. kotschyi are mapped. Diagnostic characters of E. babadaghensis and E. …

Primula × Uzungolensis (Primulaceae): A New Natural Hybrid From Ne Anatolia, Sali̇h Terzi̇oğlu, Kami̇l Çoşkunçelebi̇, Mutlu Gültepe

Turkish Journal of Botany

Primula × uzungolensis Terzioğlu & Coşkunçelebi, a natural hybrid from north-eastern Anatolia, is described and illustrated with its parents. Based on its morphology and molecular characteristics, we conclude that P. × uzungolensis is a new natural hybrid between P. acaulis (L.) Hill subsp. rubra (Sm.) Greuter & Burdet and P. veris L. subsp. columnae (Ten.) Maire & Petitmengin. Maximum parsimony (MP) analysis based on nuclear ribosomal DNA (nrDNA) and chloroplast DNA (cpDNA) shows that P. veris subsp. columnae is the maternal parent of the putative hybrid, and the hybridisation between P. veris subsp. columnae and P. acaulis subsp. rubra is …

Lectotypification, Description, And Distribution Of Arabis Deflexa (Cruciferae), Bi̇rol Mutlu, Sadik Eri̇k

Turkish Journal of Botany

In this paper, a lectotype for Arabis deflexa Boiss. is designated, and detailed morphological properties and differences between related taxa and a distribution map are given. Furthermore, an IUCN threat category is proposed.

Effects Of N Fertilisation, Organic Matter, And Biofertilisers On The Growth And Yield Of Chilli In Relation To Management Of Plant-Parasitic Nematodes, Zehra Khan, Sartaj Ali Tiyagi, Irshad Mahmood, Rose Rizvi

Turkish Journal of Botany

An experiment was conducted at the University Agricultural Research Farm to study the effect of inoculation with biological nitrogen fixers on growth and yield of chilli (Capsicum annum L.) cv. "Pusa Jawala" in relation to disease incidence caused by plant-parasitic nematodes. The growth, yield, and quality parameters of chilli increased significantly with the inoculation of biological nitrogen fixers using Azospirillum and Azotobacter. Performance of Azospirillum was found better as compared to Azotobacter. Simultaneous inoculation with biofertilisers (100% recommended dose of N-fertiliser 100 kg N per ha and farmyard manure 15 t per ha) resulted the maximum growth, yield, and quality …

Four New Records For Physarales From Turkey, Gönül Demi̇rel, Giyasetti̇n Kaşik

Turkish Journal of Botany

Physarum didermoides (Pers.) Rostaf., Physarum gyrosum Rostaf., Didymium karstensii Nann.-Bremek., and Didymium trachysporum G.Lister, taxa grown by moist chamber culture method, are 4 new records from Turkey.

A New Species Of Gypsophila And A New Name For Silene (Caryophyllaceae) From Turkey, Ergi̇n Hamzaoğlu

Turkish Journal of Botany

Gypsophila turcica Hamzaoğlu is described as a new species. The specimen was collected from gypsaceous hills, at an altitude between 1755 and 1835 m from Zara District (Sivas Province). The new species is similar to Gypsophila festucifolia Hub.-Mor. The differences between these 2 taxa are discussed. Moreover, Silene choruhensis Hamzaoğlu nom. nova should replace S. ispirensis A.P.Khokhr. 1997, which is an illegitimate name as a younger homonym of S. ispirensis Boiss. 1856.

Rugaspermum Minuta - A New Species Of The Seed Genus Rugaspermum From The Triassic Of Nidpur, India, Nupur Bhowmik, Shabnam Parveen

Turkish Journal of Botany

This paper provides a description of a new species of Rugaspermum D.D.Pant & Basu, R. minuta Bhowmik & Parveen, from the Nidpur Triassic beds. The dispersed seeds were recovered after macerating large chunks of shale in hydrofluoric acid. The structurally preserved compressed seed is platyspermic, orthotropus, and oval- to barrel-shaped with a short beak-like micropyle. The surfaces of the seeds are wrinkled and there is a wide lateral ridge running from the apex to the base on both the obverse and reverse sides. Upon maceration, the seed yielded 4 membranes: outer, inner, nucellar, and megaspore membranes. The outer cuticle of …

Epiphytic Lichen Diversity On Quercus Cerris And Q. Frainetto In The Marmara Region (Turkey), Seyhan Oran, Şule Öztürk

Turkish Journal of Botany

The epiphytic diversity of lichens associated with Quercus cerris L. and Quercus frainetto Ten. were investigated in 21 localities of the Marmara region. A total of 106 taxa belonging to 49 genera were reported on Q. cerris and Q. frainetto, and 16 of those taxa were recorded for the first time in the Marmara region. The number of lichen species found on Q. cerris was 83, while 85 taxa were found on Q. frainetto. Several differences regarding the lichen taxa were found in these 2 oaks species even though they were growing in the same habitat and in the same …

A New Species Of Vinca (Apocynaceae) From Eastern Anatolia, Turkey, Mehmet Koyuncu

Turkish Journal of Botany

Vinca soneri Koyuncu sp. nova (Apocynaceae) is described and illustrated as a new species from eastern Anatolia in Turkey. Diagnostic morphological characters of this new species from the related species V. herbacea Waldst. & Kit. are discussed.

The Leaf Anatomy Of Some Erica Taxa Native To Turkey, Ayşegül Köroğlu, Gülsen Kendi̇r

Turkish Journal of Botany

There are 5 taxa of Erica L. growing in Turkey, 1 of which is endemic. These taxa are Erica arborea, E. manipuliflora, E. bocquetii, E. sicula subsp. libanotica and E. spiculifolia. In this study, microscopic characteristics of the leaves of 4 taxa native to Turkey are reported. Microscopic views of the transverse and surface sections of the leaves of each species were photographed and are described in detail. The leaves are channelled beneath or strongly revolute. The long, simple, and unicellular eglandular trichomes are located along the channel part of the lower surface of leaves. There are simple, unicellular, and …

Cytotoxicity Of Aloe Vera Gel Extracts On Allium Cepa Root Tip Cells, Ali̇ İrfan İlbaş, Umut Gönen, Semi̇h Yilmaz, Mehmet Yaşar Dadandi

Turkish Journal of Botany

Aloe vera L. is a valuable medicinal plant and is currently used in pharmaceutical, cosmetic, and food industries worldwide. In the present study, the effect of various concentrations of Aloe vera leaf gel extracts was investigated on mitotic and phase indexes of Allium cepa L. root tip cells for 24 and 48 h durations. The EC_{50} value of gel extracts was found to be 20% and was used to determine the experimental concentrations. The results indicated that the mitotic index and root growth rate of A. cepa were considerably decreased in comparison to the control. We found that the cytotoxic …

Nickel Hyperaccumulation By Natural Plants In Turkish Serpentine Soils, Haşi̇m Altinözlü, Alpteki̇n Karagöz, Turgay Polat, İlhami̇ Ünver

Turkish Journal of Botany

Natural plants in Turkish serpentine soils were surveyed to determine their Ni accumulation capability. Geographic distribution and diethylene triamine pentaacetic acid (DTPA)-extractable nickel contents of the western Anatolian serpentine soils and their vegetative contents were studied to find the possible relationships between the phytoavailable Ni amount in the soil and the Ni content of potential accumulator plants. Over half of the surface area of Turkey was targeted in the study. Aboveground parts of 413 herbaceous plants and the surface soil (0-15 cm) of 192 serpentine samples were collected. A digital elevation model and ANUSPLIN and ArcGIS 8.1 software packages were …

Verbascum Hasbenlii (Scrophulariaceae), A New Species From Turkey, Zeki̇ Aytaç, Hayri̇ Duman

Turkish Journal of Botany

Verbascum hasbenlii Aytaç & H.Duman sp. nov. (sect. Bothrosperma Murb.) is described and illustrated from Turkey. This new species was collected in B1 Çan (Çanakkale Province) area. V. hasbenlii appears to be closely allied to V. luciliae (Boiss.) O.Kuntze and V. haraldi-adnani Parolly & Eren. Its affinities with this and other related species are discussed. The characteristic features of pollen, seed, stomata structure, and hairs are studied using a scanning electron microscope and the distribution of the new species in Turkey is given.

Pollen Grains In The Atmosphere Of Konya (Turkey) And Their Relationship With Meteorological Factors, In 2008, İlgi̇nç Kizilpinar Temi̇zer, Cahi̇t Doğan, Hasi̇be Artaç, İsmai̇l Rei̇sli̇, Sevgi̇ Pekcan

Turkish Journal of Botany

Atmospheric pollen was collected by a Burkard Volumetric 7-Day spore trap in Konya, Turkey, in 2008. In the present study, the pollen concentration is presented in relation to meteorological parameters (mean temperature, relative humidity, rainfall, and wind speed). Pollen grains of 35 taxa were identified. Of these, 18 taxa were arboreal plants, while the others were non-arboreal plants. The distribution of the total pollen grains was as follows: arboreal plants, 61.29%; Poaceae, 16.09%; non-arboreal plants, 20.25%; and undetermined, 2.37%. Arboreal taxa pollen were represented by Pinaceae, Cupressaceae/Taxaceae, Fabaceae, Betulaceae, Quercus L., Juglandaceae, and Aesculus L., while non-arboreal taxa pollen were …

Revision Of Boletus Section Appendiculati (Boletaceae) In Bulgaria With A Key To The Balkan Species, Boris Assyov

Turkish Journal of Botany

The paper presents the results from the taxonomic revision of Boletus section Appendiculati in Bulgaria. Descriptions are provided based on Bulgarian specimens for the 5 species of the section: Boletus appendiculatus, B. fechtneri, B. fuscoroseus, B. regius, and B. subappendiculatus. The priority of the name B. fuscoroseus against B. pseudoregius is briefly discussed. A dichotomous key for the determination of members is also included.

New Ascomycete Records For Turkish Macromycota, Ilgaz Akata, Abdullah Kaya, Yasi̇n Uzun

Turkish Journal of Botany

Ascobolus stercorarius (Bull.) J.Schröt. (Ascobolaceae), Cheilymenia fimicola (De Not. & Bagl.) Dennis (Pyronemataceae), Plectania melastoma (Sowerby) Fuckel, and P. rhytidia (Berk.) Nannf. & Korf (Sarcosomataceae) are given as new records at the genus level for the macromycota of Turkey.