Botany Commons^™

Koelreuteria Paniculata, Janice Coons, Nancy Coutant, Wesley Whiteside

Plants by Genus Species

Koelreuteria paniculata is native to temperate regions in China, Korea and Japan and is typically found in dry valleys (Dosmann 2006).

Verbena Hastata L., John E. Ebinger

Specimens by Name

No abstract provided.

Angiosperm Phylogeny: 17 Genes, 640 Taxa, Douglas Soltis, Steven Smith, Nico Cellinese, Kenneth Wurdack, David Tank, Samuel Brockington, Nancy Refulio-Rodriguez, Jay Walker, Michael Moore, Barbara Carlsward, Charles Bell, Maribeth Latvis, Sunny Crawley, Chelsea Black, Diaga Diouf, Zhenxiang Xi, Catherine Rushworth, Matthew Gitzendanner, Kenneth Sytsma, Yin-Long Qiu, Khidir Hilu, Charles Davis, Michael Sanderson, Reed Beaman, Richard Olmstead, Walter Judd, Michael Donoghue, Pamela Soltis

Faculty Research & Creative Activity

• Premise of the study : Recent analyses employing up to fi ve genes have provided numerous insights into angiosperm phylogeny, but many relationships have remained unresolved or poorly supported. In the hope of improving our understanding of angiosperm phylogeny, we expanded sampling of taxa and genes beyond previous analyses. • Methods : We conducted two primary analyses based on 640 species representing 330 families. The fi rst included 25 260 aligned base pairs (bp) from 17 genes (representing all three plant genomes, i.e., nucleus, plastid, and mitochondrion). The second included 19 846 aligned bp from 13 genes (representing only …

Extreme Environments Select For Reproductive Assurance: Evidence From Evening Primroses (Oenothera), Margaret E.K. Evans, David J. Hearn, Kathryn E. Theiss, Karen Cranston, Kent E. Holsinger, Michael J. Donoghue

EEB Articles

• Competing evolutionary forces shape plant breeding systems (e.g. inbreeding depression, reproductive assurance). Which of these forces prevails in a given population or species is predicted to depend upon such factors as life history, eco- logical conditions, and geographical context. Here, we examined two such predictions: that self-compatibility should be associated with the annual life history or extreme climatic conditions.

• We analyzed data from a clade of plants remarkable for variation in breeding system, life history and climatic conditions (Oenothera, sections Anogra and Kleinia, Onagraceae). We used a phylogenetic comparative approach and Bayesian or hybrid Bayesian tests to account …

Mojave Applied Ecology Notes Winter 2011, Scott R. Abella, Alice C. Newton, Kenneth Chittick, Pam Sinanian

Mojave Applied Ecology Notes

Lake Mead’s collaborative applied science research program; “annoying the elephant” - ruminations on active management by Alice Newton, Lake Mead NRA vegetation manager; 2012 NWRA Lake Mead symposium sneak peak; assessing forest change using dendrochronology in the Spring Mountains.

Switchgrass, Kenneth P. Vogel, Gautam Sarath, Aaron J. Saathoff, Robert B. Mitchell

Department of Agronomy and Horticulture: Faculty Publications

17.1 Introduction

Switchgrass (Panicum virgatum L.) is a warm-season perennial grass that is native to North America that is being developed into a biomass energy crop. It has been used in pastures and for conservation purposes in the Great Plains and the Midwest, USA, for over 70 years.1 The research supporting its use as a pasture and conservation species was largely conducted by US Department of Agriculture (USDA) research programs, most notably the Agricultural Research Service (ARS) project located at the University of Nebraska-Lincoln and USDA Plant Materials Centers that are located throughout the United States. In this report, …

Identification Of A Second Asian Soybean Rust Resistance Gene In Hyuuga Soybean, Mandy D. Kendrick, Donna K. Harris, Bo-Keun Ha, D. L. Hyten, P. B. Cregan, Reid D. Frederick, H. Roger Boerma, Kerry F. Pedley

Department of Agronomy and Horticulture: Faculty Publications

Asian soybean rust (ASR) is an economically significant disease caused by the fungus Phakopsora pachyrhizi. The soybean genes Rpp3 and Rpp?(Hyuuga) confer resistance to specific isolates of the pathogen. Both genes map to chromosome 6 (Gm06) (linkage group [LG] C2). We recently identified 12 additional soybean accessions that harbor ASR resistance mapping to Gm06, within 5 centimorgans of Rpp3 and Rpp?(Hyuuga). To further characterize genotypes with resistance on Gm06, we used a set of eight P. pachyrhizi isolates collected from geographically diverse areas to inoculate plants and evaluate them for differential phenotypic responses. …

Mutational Analysis Of The Major Soybean Uref Paralogue Involved In Urease Activation, Joe C. Polacco, D. L. Hyten, Mônica Medeiros-Silva, David A. Sleper, Kristin D. Bilyeu

Department of Agronomy and Horticulture: Faculty Publications

The soybean genome duplicated ~14 and 45 million years ago and has many paralogous genes, including those in urease activation (emplacement of Ni and CO₂ in the active site). Activation requires the UreD and UreF proteins, each encoded by two paralogues. UreG, a third essential activation protein, is encoded by the single-copy Eu3, and eu3 mutants lack activity of both urease isozymes. eu2 has the same urease-negative phenotype, consistent with Eu2 being a single-copy gene, possibly encoding a Ni carrier. Unexpectedly, two eu2 alleles co-segregated with missense mutations in the chromosome 2 UreF paralogue (Ch02UreF), suggesting …

Cytokinin-Mediated Source ⁄Sink Modifications Improve Drought Tolerance And Increase Grain Yield In Rice Under Water-Stress, Zvi Peleg, Maria Reguera, Ellen Tumimbang, Harkamal Walia, Eduardo Blumwald

Department of Agronomy and Horticulture: Faculty Publications

Drought is the major environmental factor limiting crop productivity worldwide. We hypothesized that it is possible to enhance drought tolerance by delaying stress-induced senescence through the stress-induced synthesis of cytokinins in crop-plants. We generated transgenic rice (Oryza sativa) plants expressing an isopentenyltransferase (IPT) gene driven by PSARK, a stress- and maturation-induced promoter. Plants were tested for drought tolerance at two yield-sensitive developmental stages: pre- and post-anthesis. Under both treatments, the transgenic rice plants exhibited delayed response to stress with significantly higher grain yield (GY) when compared to wild-type plants. Gene expression analysis revealed a significant shift in expression of hormone-associated …

Auxin Regulation Of Arabidopsis Flower Development Involves Members Of The Aintegumenta-Like/Plethora (Ail/Plt) Family, Beth A. Krizek

Faculty Publications

Auxin is an important regulator of many aspects of plant growth and development. During reproductive development, auxin specifies the site of flower initiation and subsequently regulates organ growth and patterning as well as later events that determine reproductive success. Underlying auxin action in plant tissues is its uneven distribution, resulting in groups of cells with high auxin levels (auxin maxima) or graded distributions of the hormone (auxin gradients). Dynamic auxin distribution within the periphery of the inflorescence meristems specifies the site of floral meristem initiation, while auxin maxima present at the tips of developing floral organ primordia probably mediate organ …

Deer Browse Monitoring Of The Lupine Population At John Merle Coulter Prairie And The Trillium Population At Hildebrand Lake, Jana C. Cram, Heather Dulaney

Symposium on Research and Creative Expression (SORCE)

A facet of ecological restoration practices in northwest Indiana involves monitoring and supporting the growth of various plants native to the region, including wild lupine (Lupinus perennis) and large-flowering trillium (Trillium grandiflorum). White-tailed deer are a common threat to these species because they eat, or browse, the flowers from these plants. This project investigated the amount of wild lupine and large-flowering trillium browsed by white-tailed deer at Coulter Prairie and Hildebrand Lake, respectively, over a four-year period. Plant counts are taken from permanent transect lines of 30 and 50 meters in length and measured in one …

Improving Ecological Monitoring Of Restoration Sites In Northwest Indiana Through A Glisten-Nirmi Partnership., Danyi Harper, Don Meola

Symposium on Research and Creative Expression (SORCE)

Northwest Indiana is an area of active ecological restoration with 169 documented restoration projects. However, the ability to assess the success of restoration projects is incomplete because monitoring of the progress of these restorations does not exist. NIRMI was created in 2010 to establish a system of evaluating and quantifying plant species in local habitat restoration projects throughout Northwest Indiana. NIRMI uses a standardized approach to collect data that is placed within an open-access database for use by other researchers, restoration groups, and individuals in evaluation of restoration efforts. Data collection uses the CVS-EEP protocol for recording vegetation, a standard …

Mapping And Analysing The Diversity Of The Genus Acantholimon Taxa In Turkey By Geographic Information Systems (Gis), Hakan Mete Doğan, Musa Doğan, Gali̇p Akaydin, Ferhat Celep

Turkish Journal of Botany

We describe the spatial distribution of the genus Acantholimon Boiss. (Plumbaginaceae) taxa in Turkey, and assess the role that environmental variables may be playing on this distribution. We collected a large number of specimens from 418 geo-referenced sampling sites between 2000 and 2004, and established a point database using geographic information systems (GIS) software. As a result, we identified and mapped 67 taxa; 43 of the determined taxa appear to be endemic. We re-evaluated the current conservation status of the taxa at a national level using recent IUCN Red List categories. In addition, we extracted the corresponding environmental variables of …

Fruit And Seed Morphology Of The Fumaria L. Species (Papaveraceae) Of Iran, Fatemeh Ebrahimzadeh Araii, Maryam Keshavarzi, Masoud Sheidaii, Parinaz Ghadam

Turkish Journal of Botany

The macro and micro fruit and seed morphology and surface ornamentations of 21 populations of 6 Fumaria L. species were investigated using stereomicroscope and scanning electron microscopy. These data are shown to support data from the general morphology. The results indicate that the fruit and seed characters of the genus Fumaria are valuable for taxonomic applications and are useful for classification. F. officinalis show a different shape in their fruit. The close relationships are observed for F. parviflora and F. vaillantii. F. indica, as a hybrid between F. asepala and F. parviflora, shows intermediate micro-morphological features.

Macrofungal Diversity Associated With The Scale-Leaf Juniper Trees, Juniperus Excelsa And J. Foetidissima, Distributed In Turkey, Hasan Hüseyi̇n Doğan, Mi̇tko Karadelev, Mustafa Işiloğlu

Turkish Journal of Botany

In this article, an attempt has been made to establish the qualitative composition of macromycetes in the communities of scale-leaf juniper, Juniperus excelsa M.Bieb. and J. foetidissima Willd., distributed in Turkey. A total of 127 species of macrofungi were registered, 2 belonging to Ascomycota and 125 to Basidiomycota. Of those, 69 species were collected in Juniperus excelsa stands, 23 in J. foetidissima stands, and 35 species in both juniper stands. The ecologic status for the fungal species is as follows: 30 lignicolous and 39 terricolous in J. excelsa stands, 19 lignicolous and 4 terricolous in J. foetidissima, and 31 lignicolous …

Ultrastructural Localisation Of Chromium In Ocimum Basilicum, Roya Bishehkolaei, Hamid Fahimi, Sara Saadatmand, Taher Nejadsattari, Mehrdad Lahouti, Forouzan Tabatabaei Yazdi

Turkish Journal of Botany

Ocimum basilicum L. seedlings were exposed to different concentrations of Cr (0-8 mg L^{-1} of Cr^{3+}) to evaluate the cellular localisation of chromium, plant accumulating capacity, and potential cellular defence mechanisms against Cr stress. Dried plant tissues (roots and shoots) were exposed to X-ray microanalysis for element determination (including Cr, Cu, Zn, Co, Ni, and Mo). Results showed that the highest amount of Cr had accumulated in the roots of the plants treated with 8 mg L^{-1} of Cr^{3+}, while less Cr was transported to the shoots. TEM micrographs of Ocimum basilicum root cortex cells exposed to 4, 6, and …

Macrofungi Of Kemaliye District (Erzincan), Hakan Alli

Turkish Journal of Botany

The material of this study comprises macrofungi specimens collected from different localities in Kemaliye district (Erzincan, Turkey) in 2006 and 2007. As a result of field and laboratory studies, 106 taxa under 35 families belonging to the classes Ascomycetes and Basidiomycetes are described: 3 of them, namely Psathyrella panaeoloides (Maire) Arnolds, Galerina stylifera var. stylifera (G.F.Atk.) A.H.Sm. & Singer, and Inocybe amblyspora Kühner, are new records for Turkey.

Strategies For Conserving Forest Genetic Resources In The Face Of Climate Change, John Bradley St.Clair, Glenn Thomas Howe

Turkish Journal of Botany

Conservation of genetic diversity is important for continued evolution of populations to new environments, as well as continued availability of traits of interest in genetic improvement programs. Rapidly changing climates present new threats to the conservation of forest genetic resources. We can no longer assume that in situ reserves will continue to preserve existing genetic diversity. Management of reserves should become more active. In some reserves, existing genetic diversity should be preserved by creating stands that are more resistant to threats using silvicultural treatments such as thinning and prescribed burning. In other reserves, natural selection and adaptation to changed environments …

A Determination Of Air Pollution In Colombo And Kurunegala, Sri Lanka, Using Energy Dispersive X-Ray Fluorescence Spectrometry On Heterodermia Speciosa, Patikiri Arachchilage Don Hasantha Nayana Gunathilaka, Rathnayake Mudiyanselage Nisansala Subodhani Ranundeniya, Mohamed Mujithaba Mohamed Najim, Shirani Seneviratne

Turkish Journal of Botany

Sri Lanka is facing severe environmental problems such as air and water pollution due to rapid industrialisation and urbanisation. Because there have not been many studies on heavy metal pollution in Sri Lanka, the present study attempts to contribute to the literature a determination of metal pollution using indicators found in lichen specimens. Our study utilised energy dispersive X-ray fluorescence spectrometry to determine element concentrations resulting from air pollution in the lichen species Heterodermia speciosa Wulfen. These samples, collected from Colombo and Kurunegala, Sri Lanka, were analysed using the energy dispersive X-ray fluorescence (EDXRF) method in order to determine the …

Seed Morphology And Anatomy Of The Mediterranean Pentamerous Species Of Erica (Ericaceae), Jaime Fagundez, Jesus Izco

Turkish Journal of Botany

The species of the "Pentapera group" are distinguished from the rest of the European and Mediterranean Erica L. species by having 5 corolla lobes and sepals instead of 4, and 10 stamens instead of 8. The genus Pentapera Klotzsch was proposed for these taxa but recent studies regards it as part of Erica. Two species are recognised: Erica sicula Guss. and E. bocquetii (Peşmen) P.F.Stevens, and 3 subspecies have been described within E. sicula. This taxonomic treatment is still under discussion and relationships with other species have been poorly discussed. Seed morphology of the 2 species and the 3 subspecies …

A New Variety Of Bromus (Poaceae) From Turkey: Bromus Psammophilus Var. Robustus Var. Nova, Hali̇l Çakan, Hildemar Scholz

Turkish Journal of Botany

Bromus psammophilus P.M.Sm., a rare endemic species, was known only from the type collection on the coastal dunes of Çukurova Delta (Adana, Turkey). Specimens belonging to the new and typical varieties of this taxon were collected from sand dunes and dune slacks where the type specimen was collected the first time. Bromus psammophilus var. robustus Çakan & H.Scholz was described as a new variety; in examination of the newly collected specimens, it differs from the typical variety by its longer spikelets, higher flower numbers in spikelets, and glabrous glumes.

A New Species Of Silene (Caryophyllaceae) From East Anatolia (Turkey): Silene Gevasica Hamzaoğlu Sp. Nova, Ergi̇n Hamzaoğlu, Murat Koç, Ümi̇t Budak

Turkish Journal of Botany

Silene gevasica Hamzaoğlu sp. nova is described as a new species from Gevaş district (Van province). The specimen was collected from calcareous rocks, at an altitude between 2100 and 2200 m from Artos mountain. The new species is similar to Silene araratica Schischk. The differences between these 2 taxa are discussed.

Population Dynamics Of Parthenium Hysterophorus (Asteraceae) And Its Biological Suppression Through Cassia Occidentalis (Caesalpiniaceae), Jai Knox, Disha Jaggi, Manoj Stephen Paul

Turkish Journal of Botany

Phytosociological analysis performed over 2005 to 2009 revealed that Cassia occidentalis L. is a dominant species at 3 of 4 sites in Agra district, India, that were previously observed to be dominated by heavy populations of Parthenium hysterophorus L. In order to determine the role of biomolecular interaction, i.e. the allelopathic effect, if any, on this shift of floral pattern effects, aqueous shoot and root cold leachates were determined on seed germination, shoot cut bioassay, seedling bioassay, chlorophyll, nitrogen, and protein content of P. hysterophorus. A significant reduction in germination percentage, shoot cut bioassay, seedling bioassay, and chlorophyll of P. …

The Revision Of The Genus Fritillaria L. (Liliaceae) In The Mediterranean Region (Turkey), Mehtap Tekşen, Zeki̇ Aytaç

Turkish Journal of Botany

This paper presents a systematic revision of Fritillaria L. (Liliaceae) in the Mediterranean region of Turkey. The genus used to contain 22 taxa in the Mediterranean region, but in this study it has been evaluated on the basis of 23 taxa. We concluded that F. armena Boiss. and F. zagrica Stapf are synonyms of F. pinardii Boiss. Phylogenetic orders of F. forbesii Rix and F. kittaniae Sorger in the Flora of Turkey were changed. F. crassifolia Boiss. & Huet. subsp. crassifolia was suggested as an Irano-Turanian element. Red list categories of endemic taxa of Mediterranean Fritillaria were revised according to …

Comparative Micromorphological And Phytochemical Studies On The Roots Of Three Viburnum (Caprifoliaceae) Species, Kathiresan Prabhu, Pradip Kumar Karar, Siva Hemalatha, Kathiresan Ponnudurai

Turkish Journal of Botany

In this study, the roots of Viburnum punctatum Buch.-Ham. ex D.Don, Viburnum coriaceum Blume, and Viburnum erubescens Wall. ex DC. were collected from the Nilgiri and Coimbatore hills in Tamil Nadu, India. Transverse sections of plant roots were prepared with the aid of a rotary microtome. The sections, each at a thickness of 10 µm, were stained and fixed in Canada balsam and the morphoanatomical features of each specimen were noted. The specimens were powdered using a mechanical grinder and were mounted in suitable media for starch grains, sclereids, druses, fibres, and vessels. Morphoanatomical features of diagnostic importance were recorded …

Contents, Discovery Editors

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Instructions For Authors, Discovery Editors

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

Comparison Of Growing Media For Container Grown Plants, Paul Harris, David Longer, Derrick Oosterhuis, Dimitra Loka

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

Greenhouse and growth chamber experiments are conducted worldwide in efforts to produce solutions that would increase yields of agronomic crops. However, the results of those experiments vary due to the many growth media being used. An experiment was conducted in the fall of 2010 to identify a broadly acceptable growth media that would produce uniform stands and optimum results in greenhouse and growth chamber settings. A total of six growth media were tested on cotton (Gossypium hirsutum) at the Arkansas Agricutural Research and Extension Center’s Altheimer Lab in Fayetteville. The plants grown in each medium were harvested six weeks after …

Saplings 2011, Sean M. Goins, Joseph Braner, Amy L. Myers, Charlie Jackson, Julia I. Chapman, Ryan W. Mcewan

Data Files: Drew Woods Permanent Plots

Sapling data (woody species >50 centimeters in height and <2.5 cm diameter at breast height) collected in 2011 at Drew Woods State Nature Preserve in Darke County, OH. Data key is provided in a supplemental file.

Overstory 2011, Sean M. Goins, Joseph Braner, Amy L. Myers, Charlie Jackson, Albert J. Burky, Julia I. Chapman, Ryan W. Mcewan

Data Files: Drew Woods Permanent Plots

Overstory data (woody species ≥2.5 centimeters in diameter at breast height) collected in 2011 at Drew Woods State Nature Preserve in Darke County, OH. Data key is provided in a supplemental file.