Botany Commons^™

Letter From The Dean, Lalit Verma

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

No abstract provided.

New Records For The Freshwater Algae Of Turkey, Tülay Baykal, Aydin Akbulut, İlkay Açikgöz, Abel U. Udoh, Kazim Yildiz, Bülent Şen

Turkish Journal of Botany

Algae samples were collected from important dam lakes and running waters of the Lower Euphrates Basin. Eighteen new records of Turkish freshwater algae were identified. Among these new records, 5 belong to Cyanophyta, 10 to Chlorophyta, 1 to Xanthophyta, and 2 to Bacillariophyta.

Characterizing The Variability Of Physical And Chemical Properties Across The Soil Individuals Mapped As Amy Silt Loam Soils In Southeastern Arkansas, B. Bhandari, Robert L. Ficklin

Journal of the Arkansas Academy of Science

Knowledge of physical and chemical properties of soil is relevant for landowners, researchers, and foresters, so that appropriate crop species and management practices to maximize site productivity can be selected. In addition to issues of plant productivity, the need for assessing soil properties has been expanded due to public interest in determining the consequences of management practices on soil quality relative to sustainability of crop ecosystem functions. The USDA-Natural Resources Conservation Service (NRCS) delineated soil mapping units to provide information about physical and chemical properties of soil in each soil series. However, soil mapping units do not provide details about …

Vegetable Growing : A Guide For Home Gardeners In Western Australia, Department Of Agriculture, Western Australia

Bulletins 4000 -

DAFWAs popular publication about vegetable growing for home gardeners.

Land Resources Series No 21 - Tambellup-Borden Area Land Resources Survey, Angela Stuart-Street, Rohan Marold

Natural resources published reports

AGDEX 526

Land Resources Series No. 21

This report presents results from soil-landscape mapping at a scale of 1: 100,000 in the Tambellup- Borden area of Western Australia. It is accompanied by a soil-landscape map covering almost 511,000 hectares.

Most of the survey occurs within the upper Frankland-Gordon, Kent, North Stirlings Basin and upper reaches of the Pallinup and Kalgan River catchments. The survey falls within the Katanning and Albany Department of Agriculture and Food advisory districts.

Seventeen soil-landscape systems have been identified and are represented on the map on the accompanying CD-ROM. These systems have been further divided into …

Phylogeny, Adaptive Radiation, And Historical Biogeography In Bromeliaceae: Insights From An Eight-Locus Plastid Phylogeny, Thomas J. Givnish, Michael H. J. Barfuss, Benjamin Van Ee, Ricarda Riina, Katharina Schulte, Ralf Horres, Philip A. Gonsiska, Rachel S. Jabaily, Darren M. Crayn, J. Andrew Smith

Biological Sciences Faculty Publications

Premise: Bromeliaceae form a large, ecologically diverse family of angiosperms native to the New World. We use a bromeliad phylogeny based on eight plastid regions to analyze relationships within the family, test a new, eight-subfamily classification, infer the chronology of bromeliad evolution and invasion of different regions, and provide the basis for future analyses of trait evolution and rates of diversification.

Methods: We employed maximum-parsimony, maximum-likelihood, and Bayesian approaches to analyze 9341 aligned bases for four outgroups and 90 bromeliad species representing 46 of 58 described genera. We calibrate the resulting phylogeny against time using penalized likelihood applied …

Congruence Of Rapd And Issr Markers For Evaluation Of Genomic Relationship Among 28 Populations Of Podophyllum Hexandrum Royle From Himachal Pradesh, India, Md. Afroz Alam, Pradeep Kumar Naik, Gyan Prakash Mishra

Turkish Journal of Botany

Twenty eight populations of Podophyllum hexandrum Royle were selected to study genetic relationship using RAPD and ISSR markers from north-western Himalayas, Himachal Pradesh, India. Nineteen RAPD primers and 11 ISSR primers amplified a total of 131 and 68 scorable bands, of which 92.37% and 83.82%, respectively, were polymorphic. The mean coefficient of gene differentiation (Gst) was 0.6933 and 0.6296, indicating that Nei´s gene diversity of 33.77% and 29.44% reside in all the populations. Estimated value of gene flow for RAPD (Nm = 0.11059), for ISSR (Nm = 0.1470) individually, and the combination of RAPD+ISSR (Nm = 0.1211) markers indicated that …

Benthic Algae (Except Bacillariophyta) And Their Seasonal Variations In Karagöl Lake (Borçka, Artvin-Turkey), Saadet Kolayli, Bülent Şahi̇n

Turkish Journal of Botany

Seasonal variation in the species composition of the benthic algae of Karagöl Lake was investigated from April to October in 2001 and 2002. The benthic algal flora consisted of 38 taxa belonging to the divisions Chlorophyta, Cyanophyta, Euglenophyta, and Chrysophyta. In general, Chlorophyta were dominant in terms of species number and abundance during the study period. The distribution range of the benthic algae composition and dominant species differed from each other at all stations. Benthic algal growth was mostly influenced by water temperature and light.

A New Record For Turkey: Salvia Aristata Aucher Ex Benth. (Lamiaceae), Lütfi̇ Behçet, Davut Avlamaz

Turkish Journal of Botany

Salvia aristata Aucher ex Benth. (Lamiaceae) is recorded for the first time from south-east Turkey.

Some New Records Of Inocybe (Fr.) Fr. From Turkey, Mehmet Hali̇l Solak, Hakan Alli, Mustafa Işiloğlu, Erbi̇l Kalmiş

Turkish Journal of Botany

Some new records of Inocybe (Fr.) Fr. based on samples collected from Osmaniye, Kilis, and Isparta provinces are presented. Inocybe flocculosa var. crocifolia (Herink) Kuyper, I. ochroalba Bruyl., I. pallida Velen., I. splendens var. splendens R. Heim, I. substellata Kühner, and I. vaccina Kühner were determined to be new records from Turkey.

Karyomorphological Study Of Eight Centaurea L. Taxa (Asteraceae) From Turkey, Esra Marti̇n, Muhi̇tti̇n Di̇nç, Ahmet Duran

Turkish Journal of Botany

Centaurea L. (Asteraceae) is one of the largest genera in Turkey. The chromosome number and morphology of 8 taxa belonging to the genus Centaurea were investigated using an image analysis system. Among these taxa, the chromosome numbers were as follows: 2n = 18 in C. cariensis Boiss. subsp. niveotomentosa (Hub.-Mor.) Wagenitz, C. lycaonica Boiss. & Heldr., C. virgata Lam., and C. polyclada DC.; 2n = 24 in C. cyanus L.; 2n = 36 in C. virgata and C. cariensis Boiss. subsp. cariensis: 2n = 40 in C. urvillei DC. subsp. urvillei; 2n = 54 in C. tuzgoluensis Aytaç & H.Duman. …

The Rediscovery Of Some Taxa Thought To Have Been Extinct In Turkey, Ali̇ Kandemi̇r

Turkish Journal of Botany

This paper reports the re-discovery of Barbarea auriculata Hausskn. ex Bornm. var. auriculata (Brassicaceae), Onobrychis nitida Boiss. (Fabaceae), Onosma discedens Hausskn. ex Bornm. (Boraginaceae), and Silene oligotricha Hub.-Mor. (Caryophyllaceae). All of these taxa had been listed as Extinct (EX), according to the World Conservation Union Red List Categories. This study provides the re-descriptions of these taxa, presents field observations of these taxa, and suggests new IUCN categories.

New Records Of Senecio L. (Asteraceae) For The Flora Of Turkey, Ümi̇t Budak, Ergi̇n Hamzaoğlu, Ahmet Aksoy

Turkish Journal of Botany

Senecio grandidentatus Ledeb. and Senecio doriiformis DC. subsp. doriiformis (Asteraceae) were recently collected from Posof (Ardahan province) and Çatak (Van province), and are new records for the flora of Turkey. Their descriptions and distributions are given.

In Vitro And In Vivo Germination Of Cyclamen Alpinum Seeds, Betül Bürün, Oral Şahi̇n

Turkish Journal of Botany

Cyclamen trochopteranthum O.Schwarz has a confusing history, having been identified in the last part of the 19^{th} century and described as Cyclamen alpinum Sprenger. It remained known as C. alpinum until 1975, when it was described as C. trochopteranthum by Otto Schwarz. Cyclamen trochopteranthum is a species distributed in the south-western part of Turkey, but the C. trochopteranthum described in 1975 is today describe again as Cyclamen alpinum. The seeds of this species were collected from red pine forests in the Gökbel-Dalyan area on May 3-7 and stored with and without capsules in incubators at 20 °C. Among the seeds …

The Genus Halothamnus Jaub. & Spach (Chenopodiaceae) In Turkey, Helmut Freitag, Vagif Atamov, Esat Çeti̇n, Mustafa Aslan

Turkish Journal of Botany

The semidesert taxon Halothamnus (Chenopodiaceae), which is confirmed to supersede the later Aellenia, is represented in Turkey by H. glaucus subsp. glaucus and H. hierochunticus. The former was known to occur in Kars and Ağri provinces but was found recently in Kayseri province as well. The latter is a new record for the flora of Turkey from Şanlıurfa province close to the Syrian border. Full descriptions of the genus and the species occurring in Turkey are given and the case of Aellenia is discussed. Images and distributional data including maps are provided.

Reed – Periphyton – Mycota Interactions In The Water Of Different Water Bodies, Bazyli Czeczuga, Bozenna Mazalska, Anna Godlewska, Elzbieta Muszynska

Turkish Journal of Botany

The authors investigated the influence of periphyton that abundantly overgrow stalks of reeds (reed-periphyton) submerged in water [Phragmites australis (Cav.) Trin. ex Stewdel], especially the old ones, on the occurrence of mycoflora species in different trophic seasons in the water of 4 trophically different water bodies. The seeds and snake exuviae were used as bait. In the spring, diatoms were the predominant group of algae forming the periphyton on old reed stalks, green algae predominated in the summer, and cyanobacteria in the autumn. During the seasons studied, in the water from Lake Blizno equal numbers of mycoflora species were noted …

Notes On Some Lichenicolous Fungi Species From Turkey Ii, Mehmet Gökhan Halici, Mehmet Candan, Ayşen Özdemi̇r Türk

Turkish Journal of Botany

Nine species of lichenicolous fungi are reported from various provinces of Turkey. Five species of these (Endococcus janae, Lichenochora aprica, Pronectria xanthoriae, Sarcopyrenia cylindrospora, and Zwackhiomyces cervinae) are reported for the first time from Turkey. All these taxa, except Zwackhiomyces cervinae, are also new to Asia. Comments on their habitats and substrata and a short diagnosis are provided for each new taxon new to Turkey.

Callus Induction, Biomass Growth, And Plant Regeneration In Digitalis Lanata Ehrh.: Influence Of Plant Growth Regulators And Carbohydrates, Zohra Fatima, Abdul Mujib, Samar Fatima, Anjum Arshi, Shahid Umar

Turkish Journal of Botany

The effect of plant growth regulators (PGRs) and carbohydrate sources on callus induction, callus growth, and plant regeneration in foxglove was examined. Explants were transferred onto MS medium with various levels of PGRs and carbohydrates to determine the optimum explant and effective combinations of PGR treatment. For callus induction 6.0 mg L^{-1} of \alpha-naphthalene acetic acid (NAA) and 3.0 mg L^{-1} of benzyl-aminopurine (BA) were very responsive. Addition of cytokinins (BA and kinetin) at 0.5-3.0 mg L^{-1} to media containing NAA enhanced callus growth. Shoot regeneration was best achieved in MS + 6.0 mg L^{-1} of BA. Adenine sulphate (Ade) …

Diversity Of Endophytic Fungi From Various Aegean And Mediterranean Orchids (Saleps), Yüksel Gezgi̇n, Rengi̇n Eltem

Turkish Journal of Botany

The diversity and host specificity of endophytic and Rhizoctonia-like fungi were investigated in orchids from the Aegean and Mediterranean regions. Endophytic fungi from various Aegean and Mediterranean orchids (Anacamptis pyramidalis (L.) L.C.M.Richard, Orchis sancta L., Ophrys fusca Link., and Serapias vomeracea subsp. orientalis Greuter) were isolated and identified partially. Surface sterilisation of roots and tubers was carried out in laminar airflow under aseptic conditions. Several modified methods for the isolation of symbiotic fungi from orchid roots and tubers were used. Most of the orchid endophytes isolated was found to be Fusarium Link ex Fr. spp. A total of 47 isolates, …

Contribution To The Desmid Flora Of Turkey, Bülent Şahi̇n

Turkish Journal of Botany

Cosmarium botrytis Menegh. ex Ralfs var. tumidum Wolle, Cosmarium notabile Bréb. var. transiens Insam et Krieger, Cosmarium tetragonum (Näg.) Arch. in Pritchard var. tetragonum, and Cosmarium vogesiacum Lemaire var. alpinum (Schmidle) Laporte are recorded for the first time for the desmid flora of Turkey. The desmids are recorded from Yedigöller Lakes in the Eastern Black Sea region of Turkey.

Phellinus Sulphurascens (Hymenochaetaceae, Basidiomycota): A Very Rare Wood-Decay Fungus In Europe Collected In Turkey, Hasan Hüseyi̇n Doğan, Mitko Karadelev

Turkish Journal of Botany

Phellinus sulphurascens Pilát was collected from juniper tree stumps (Juniperus excelsa and J. foetidissima) in two different localities situated in the Mediterranean region of Turkey. This very rare species is known in Europe only from the Ural Mountains in Russia. This fungus is an aggressive root rot pathogen associated with Douglas fir and other conifers in North America. This is the first report on juniper as a new host outside of its known distribution area.

Bulked Segregant Analysis Using The Goldengate Assay To Locate The Rpp3 Locus That Confers Resistance To Soybean Rust In Soybean, D. L. Hyten, James R. Smith, Reid D. Frederick, Mark L. Tucker, Qijian Song, P. B. Cregan

Department of Agronomy and Horticulture: Faculty Publications

Few resistance loci to soybean rust (SBR), caused by Phakopsora pachyrhizi Syd., have been genetically mapped and linked to molecular markers that can be used for marker assisted selection. New technologies are available for single nucleotide polymorphism (SNP) genotyping that can be used to rapidly map traits controlled by single loci such as resistance to SBR. Our objective was to demonstrate that the highthroughput SNP genotyping method known as the GoldenGate assay can be used to perform bulked segregant analysis (BSA) to fi nd candidate regions to facilitate effi cient mapping of a dominant resistant locus to SBR designated Rpp3 …

Mapping And Confirmation Of A New Allele At Rpp1 From Soybean Pi 594538a Conferring Rb Lesion–Type Resistance To Soybean Rust, Nanda Chakraborty, Joe Curley, Reid D. Frederick, D. L. Hyten, Randall L. Nelson, Glen L. Hartman, Brian W. Diers

Department of Agronomy and Horticulture: Faculty Publications

Soybean rust, caused by Phakopsora pachyrhizi (H. Sydow & Sydow), is a destructive soybean [Glycine max (L.) Merr.] disease and identification of new resistance genes is essential for effective rust management. Our research objectives were to map and confirm the location of resistance gene(s) in PI 594538A using a population of 98 F_3:4 lines from across between PI 594538A (reddish-brown [RB] lesions) and the susceptible cultivar Loda (tan [TAN] lesions). The lines were inoculated with the P. pachyrhizi isolate ZM01-1 from Zimbabwe. The RB resistance in PI 594538A mapped on linkage group G as a single dominant gene. …

Agroecology As A Science, A Movement And A Practice: A Review, A. Wezel, S. Bellon, T. Doré, Charles A. Francis, D. Vallod, C. David

Department of Agronomy and Horticulture: Faculty Publications

Agroecology involves various approaches to solve actual challenges of agricultural production. Though agroecology initially dealt primarily with crop production and protection aspects, in recent decades new dimensions such as environmental, social, economic, ethical and development issues are becoming relevant. Today, the term ‘agroecology’ means either a scientific discipline, agricultural practice, or political or social movement. Here we study the different meanings of agroecology. For that we analyse the historical development of agroecology. We present examples from USA, Brazil, Germany, and France. We study and discuss the evolution of different meanings agroecology. The use of the term agroecology can be traced …

Detection And Validation Of Single Feature Polymorphisms Using Rna Expression Data From A Rice Genome Array, Sung-Hyun Kim, Prasanna R. Bhat, Xinping Cui, Harkamal Walia, Jin Xu, Steve Wanamaker, Abdelbagi M. Ismail, Clyde Wilson, Timothy J. Close

Department of Agronomy and Horticulture: Faculty Publications

Background: A large number of genetic variations have been identified in rice. Such variations must in many cases control phenotypic differences in abiotic stress tolerance and other traits. A single feature polymorphism (SFP) is an oligonucleotide array-based polymorphism which can be used for identification of SNPs or insertion/deletions (INDELs) for high throughput genotyping and high density mapping. Here we applied SFP markers to a lingering question about the source of salt tolerance in a particular rice recombinant inbred line (RIL) derived from a salt tolerant and salt sensitive parent. Results: Expression data obtained by hybridizing RNA to an oligonucleotide array …

Antibiotic Use In Animal Production: Environmental Concerns, Teshome H. Regassa, Richard K. Koelsch, Charles S. Wortmann, Richard F. Randle, Akwasi A. Abunyewa

Department of Agronomy and Horticulture: Faculty Publications

Introduction

Antibiotic1 use in animal production has led to improved feed use efficiency and increased growth rates. In turn, these resulted in reduced food production costs and reduced excrement of manure nutrients which may cause pollution problems.

On the other hand, antibiotic use leads to antibiotic resistance and a possible reduction in effectiveness of treatment options for both animals and humans. This publication addresses these issues.

Disease-causing microorganisms2, including bacteria,are the most diverse and numerous organisms on earth. Diverse in their habitat, environmental adaptation, and mechanisms of reproduction, they have short generations with high multiplication rates. Such characteristics help develop …

Effect Of Increased Carbon Dioxide Levels On Urushiol Production In Toxicodendron Radicans And Toxicodendron Toxicarium, Meredith Gilbert

Theses and Dissertations

It is hypothesized that global warming is at least partially due to increased greenhouse gases, one of which is carbon dioxide. An increase in atmospheric carbon dioxide has been shown to stimulate higher rates of plant productivity, including the production of plant toxins like urushiol. Urushiol, a secondary plant compound produced in members of the Anacardiaceae family, causes dermatitis in sensitive individuals. An increase in urushiol production could increase the reactivity of certain individuals to plants like poison oak and poison ivy. To determine how elevated levels of atmospheric carbon dioxide would effect urushiol production, 16 samples of poison ivy …

Mojave Applied Ecology Notes Winter 2009, Scott R. Abella, Lindsay P. Chiquoine, Alice C. Newton

Mojave Applied Ecology Notes

Chronology of forest structure and use in the Spring Mountains, Soil-Tech’s restoration work balancing construction with nature, species performance and treatment effectiveness for revegetation projects, and strategic research areas for Mojave conservation and management

Arkansas Soybean Performance Tests 2008, D. G. Dombek, R. D. Bond, I. L. Eldridge, R. M. Pryor

Arkansas Agricultural Experiment Station Research Series

Soybean cultivar performance tests are conducted each year in Arkansas by the University of Arkansas Division of Agriculture. The tests provide information to companies developing cultivars and/or marketing seed within the state, and aid the Arkansas Cooperative Extension Service in formulating cultivar recommendations for soybean producers

Floral Biology Of Aconitum Heterophyllum Wall.: A Critically Endangered Alpine Medicinal Plant Of Himalaya, India, Bhagwati P. Nautiyal, Mohan C. Nautiyal, Vinod P. Khanduri, Neelum Rawat

Turkish Journal of Botany

Aconitum heterophyllum Wall. is a critically endangered wild medicinal herb of alpine Himalaya and cultivation is recommended owing to its large demand in the herbal market and to ensure the conservation of wild habitats. Therefore, observations on floral biology, pollen germination, pollination, and fruit and seed setting after implying different breeding systems were carried out for its successful domestication and improvement in cultivation practices. The study reveals that the plants grown in hothouse conditions showed considerable variation in the production of flowers and seeds. Flowering occurs from the second week of September to late October, with 20 days of peak …