Botany Commons^™

Microsatellite Variations Of Elite Setaria Varieties Released During Last Six Decades In China, Guanqing Jia, Xiaotong Liu, James C. Schnable, Zhengang Niu, Chunfang Wang, Yuhui Li, Shujun Wang, Suying Wang, Jinrong Liu, Erhu Guo, Hui Zhi, Xianmin Diao

Department of Agronomy and Horticulture: Faculty Publications

Crop improvement is a multifaceted micro-evolutionary process, involving changes in breeding approaches, planting configurations and consumption preferences of human beings. Recent research has started to identify the specific genes or genomic regions correlate to improved agronomic traits, however, an apparent blank between the genetic structure of crop elite varieties and their improving histories in diverse modern breeding programs is still in existence. Foxtail millet (Setaria italica) was one of the earliest cereal crops to be domesticated and served as a staple crop for early civilizations in China, where it is still widely grown today. In the present trial, …

Historical Common Names Of Great Plains Plants, With Scientific Names Index. Volume I: Common Names, Elaine Nowick

Zea E-Books Collection

Containing thousands of entries of both vernacular and scientific names of Great Plains plants, the literature that informs this exhaustive listing spans nearly 300 years. Author Elaine Nowick has drawn from sources as diverse as Linnaeus, Lewis and Clark, and local university extension publications to compile the gamut of practical, and often fanciful, common plant names used over the years. Each common name is accompanied by a definitive scientific name with references and authority information. Interspersed with scientifically-correct botanical line drawings, the entries are written in standard ICBN format, making this a useful volume for scholars as well as lay …

Historical Common Names Of Great Plains Plants, With Scientific Names Index. Volume Ii: Scientific Names Index, Elaine Nowick

Zea E-Books Collection

Containing thousands of entries of both vernacular and scientific names of Great Plains plants, the literature that informs this exhaustive listing spans nearly 300 years. Author Elaine Nowick has drawn from sources as diverse as Linnaeus, Lewis and Clark, and local university extension publications to compile the gamut of practical, and often fanciful, common plant names used over the years. Each common name is accompanied by a definitive scientific name with references and authority information. Interspersed with scientifically-correct botanical line drawings, the entries are written in standard ICBN format, making this a useful volume for scholars as well as lay …

Evaluation And Association Mapping Of Resistance To Tan Spot And Stagonospora Nodorum Blotch In Adapted Winter Wheat Germplasm, Zhaohui Liu, Ibrahim El-Basyoni, Gayan Kariyawasam, Guorong Zhang, Allan Fritz, Jana Hansen, Francois Marais, Andrew Friskop, Shiaoman Chao, Eduard Akhunov, P. Stephen Baenziger

Department of Agronomy and Horticulture: Faculty Publications

Tan spot and Stagonospora nodorum blotch (SNB), often occurring together, are two economically significant diseases of wheat in the Northern Great Plains of the United States. They are caused by the fungi Pyrenophora tritici-repentis and Parastagonospora nodorum, respectively, both of which produce multiple necrotrophic effectors (NE) to cause disease. In this work, 120 hard red winter wheat (HRWW) cultivars or elite lines, mostly from the United States, were evaluated in the greenhouse for their reactions to the two diseases as well as NE produced by the two pathogens. One P. nodorum isolate (Sn4) and four Pyrenophora tritici-repentis isolates (Pti2, …

Tallgrass Prairie Vegetation Response To Spring Fires And Bison Grazing, Stephen L. Winter, Brady W. Allred, Karen R. Hickman, Samuel D. Fuhlendorf

School of Natural Resources: Faculty Publications

Spring fires in tallgrass prairie can create environmental conditions conducive to plant growth in the subsequent growing season. Following fires, burned areas can also be attractive to grazing animals such as bison (Bison bison). Sustained grazing activity within recently burned areas can alter vegetation structure relative to nearby landscape patches that haven’t burned recently. In 2007, we collected data on bison grazing activity, vegetation structure, and the growth and reproduction of a perennial forb, Arnoglossum plantagineum, in Oklahoma tallgrass prairie. We compared these variables in landscape patches that had burned in the spring of 2007 to measurements …

Riqueza De Helmintos Parásitos De Vertebrados Silvestres Del Estado De Hidalgo, México, Jorge Falcón-Ordaz, Scott Monks, Griselda Pulido-Flores, Luis García-Prieto, Georgina Lira-Guerrero

Estudios en Biodiversidad

La diversidad de helmintos parásitos de vertebrados del estado de Hidalgo, en México es poco conocida, a pesar de que su estudio se inició desde 1937. Asimismo, mucha de la información generada se ha publicado de manera dispersa, lo que dificulta aún más el establecer con precisión los valores actuales. Por ello, el objetivo de este trabajo fue determinar la riqueza de la fauna helmintológica asociada a vertebrados silvestres de Hidalgo. Para alcanzar dicho objetivo, se realizaron tres acciones: 1) recopilación bibliográfica retrospectiva de información; 2) consulta al acervo de diversas colecciones científicas nacionales e internacionales, e 3) incorporación de …

Calidad Del Agua En La Subcuenca Fluvial La Garita, Acapulco, Guerrero Por Monitoreo Con Insectos, Ana Yolanda Rosas-Acevedo, Audel Sánchez-Infante, José Luis Rosas-Acevedo

Estudios en Biodiversidad

La subcuenca La Garita (Región Hidrológica: Rh19Ac) ha sufrido la influencia del hombre, presenta escorrentía y momentos de estiaje, además de puntos aislados de contaminación por basura y descargas. Se realizó un monitoreo de insectos. Se exploró la posibilidad del uso del índice BMWP (Biological Monitoring Working Party), para arroyos y ríos, en la determinación de la calidad del agua y del ecosistema. En la parte alta o cabecera (BMWP=122) correspondió a excelente (ecosistema no impactado), en la zona media o de transferencia (BMWP-CR=118) fue buena (ecosistema no alterado de manera sensible) y en la parte baja o zona de …

Problemática De Contaminación En La Zona Agrícola De La Reserva De La Biosfera Barranca De Metztitlán, Hidalgo, México, Maritza López-Herrera, Leticia Romero-Bautista, Nahara Ayala-Sánchez, Irma E. Soria-Mercado, Amelia Portillo-López

Estudios en Biodiversidad

El presente trabajo se generó con el objetivo de dar a conocer la problemática que existe actualmente en una zona agrícola de gran importancia en el estado de Hidalgo, la “Vega de Metztitlán”, zona que forma parte de la Reserva de la Biosfera Barranca de Metztitlán, sitio declarado como reserva federal. El aporte de agua residual que se hace a través de los acuíferos que irrigan a la zona, ha generado que este sitio se vea expuesto a un gran riesgo de contaminación por metales pesados, hidrocarburos y demás contaminantes, los cuáles quedan biodisponibles para las plantas e indirectamente existe …

Los Hongos Poliporoides De La Subcuenca Del Río Metztitlán, Hidalgo, México, Leticia Romero-Bautista, Miguel Ángel Islas-Santillán, Maritza López-Herrera, Nahara Ayala-Sánchez, Irma Estela Soria-Mercado, Amelia Portillo-López, Tania Raymundo-Ojeda, Ricardo Valenzuela-Garza

Estudios en Biodiversidad

Los hongos poliporoides son excelentes descomponedores de la madera, aunque también hay ectomicorrizógenos; su importancia ecológica radica en que ayudan a mantener el equilibrio del ciclo del carbono en la naturaleza. Además presentan potencial biotecnológico dadas sus características nutrimentales, medicinales y degradadoras, por su capacidad de producir metabolitos secundarios y ser potencialmente cultivables. Se analiza la importancia del impacto ambiental en los ecosistemas de la subcuenca del río Metztitlán y la diversidad de este grupo de hongos asociados a ellos. Se revisaron ejemplares de herbario y se realizaron exploraciones micológicas en 13 comunidades vegetales de 11 municipios, y 37 localidades …

Indicadores Bióticos De Calidad Ambiental Del Sur Del Estado De Tamaulipas, México. Caso De Estudio: Aves, René Bernardo Elías Cabrera-Cruz, Marco Antonio González-González, Julio César Rolón-Aguilar, Juan Carlos Gaytán-Oyarzún

Estudios en Biodiversidad

Este trabajo plantea una evaluación de prioridad biológica para la conservación de aves en la región sur de Tamaulipas, México. La metodología empleada fue la técnica Evaluación Rápida de Prioridad Biológica (ERPBIO). Esta permite determinar las principales zonas y grupos a conservar en flora y fauna para amplias zonas de estudio de manera rápida y precisa. La región sur de Tamaulipas comprende los municipios de Aldama, Altamira, Ciudad Madero, González y Tampico, con una superficie total de 8,969.05 km2. Dentro de los resultados obtenidos se elaboró una base de datos por municipio, encontrando una amplia cantidad de estudios con un …

La Biodiversidad De Los Hongos Ectomicorrízicos Y Su Importancia Para La Conservación Del Bosque En La Zona Poblana Del Parque Nacional Malintzi, Marco Antonio Marín-Castro, Virginia Silva-Díaz, Gladys Linares-Fleites, Ana María Castagnino, José Antonio Ticante-Roldán

Estudios en Biodiversidad

El Parque Nacional Malintzi comprende una superficie de 45,852 hectáreas, de las cuales corresponden 14,544 al estado de Puebla. El deterioro a su riqueza forestal tiene sus inicios desde la época colonial y hasta nuestros días la presión sobre los recursos de este parque nacional aumenta debido a que los pobladores de la zona, tradicionalmente ven en la montaña su fuente de sustento mediante la agricultura y la extracción de madera, que aunadas a la tala clandestina inmoderada, han influido drásticamente en la pérdida de biodiversidad y cambio de uso del suelo. Los objetivos de este trabajo fueron describir la …

Los Hongos Agaricales De Las Áreas De Encino Del Estado De Baja California, México, Nahara Ayala-Sánchez, Irma E. Soria-Mercado, Leticia Romero-Bautista, Maritza López-Herrera, Roxana Rico-Mora, Amelia Portillo-López

Estudios en Biodiversidad

Se realizó una recopilación de las especies de hongos del orden Agaricales (regionalmente conocido como “agaricoides”) de los bosques Quercus spp. de la península de Baja California (México), con la pretensión de contar con un panorama de la diversidad de este grupo taxonómico en el área, su distribución y dinámica dentro de estos ecosistemas y el papel ecológico de cada una de las especies citadas. Para la realización del presente estudio se reunió la información obtenida de las especies recolectadas de las diferentes localidades de las áreas de encino del estado de Baja California desde 1996 hasta el presente, ejemplares …

Los Agaves Mezcaleros Del Altiplano Potosino Y Zacatecano, Edgar León Esparza-Ibarra, Juan Violante-González, Scott Monks, Jorge Cadena Iñiguez, Cuauhtémoc Araujo-Andrade, Erich Dietmar Rössel-Kipping

Estudios en Biodiversidad

En el Altiplano Potosino y Zacatecano, los agaves mezcaleros son un componente socioeconómico importante ya que se pueden aprovechar desde el punto de vista económico, ya que tiene valor en el mercado para la producción de bebidas espirituosas como el mezcal; social, ya que su producción y modo de empleo genera jornales disminuyendo la migración; en la salud, por la producción de aguamiel, jarabes e inulinas como complemento nutricional; científico, por los aportes al conocimiento en la variación biológica de los agaves; debido a la diversidad y su plasticidad para enfrentar temperaturas extremas y sequías prolongadas, entre otros. Es por …

El Arbolado De Los Espacios Públicos Abiertos De La Zona De Monumentos Del Centro Histórico De La Ciudad De Puebla, Víctor Gutiérrez-Pacheco, Sonia Emilia Silva-Gómez, José Silvestre Toxtle-Tlamani, J. Santos Hernández-Zepeda

Estudios en Biodiversidad

Los conglomerados humanos, presentan espacios públicos abiertos (EPA´s), sobre todo arbolados, con funciones estéticas, sociales y ambientales. Se requiere información e indicadores con un enfoque ecológico, para que su atención descanse sobre una planeación documentada. Así, se pretende conocer la composición arbórea, su distribución y la biodiversidad en los Espacios Públicos Abiertos (EPA´s) de la Zona de Monumentos del Centro Histórico de la Ciudad de Puebla (ZMCHP). Por tanto, se contaron los especímenes, se ubicaron en los EPA´s y se identificaron. Para determinar la biodiversidad se aplicó el Índice de Diversidad de Shannon-Wiener (H´). En 25 EPA´s, se censaron 1,120 …

Characterization Of Novel Sorghum Brown Midrib Mutants From An Ems-Mutagenized Population, Scott E. Sattler, Ana Saballos, Zhanguo Xin, Deanna L. Funnell-Harris, Wilfred Vermerris, Jeffrey F. Pedersen

Department of Agronomy and Horticulture: Faculty Publications

Reducing lignin concentration in lignocellulosic biomass can increase forage digestibility for

ruminant livestock and saccharification yields of biomass for bioenergy. In sorghum (Sorghum bicolor (L.) Moench) and several other C4 grasses, brown midrib (bmr) mutants have been shown to reduce lignin concentration. Putative bmr mutants isolated from an EMS-mutagenized population were characterized and classified based on their leaf midrib phenotype and allelism tests with the previously described sorghum bmr mutants bmr2, bmr6, and bmr12. These tests resulted in the identification of additional alleles of bmr2, bmr6, and bmr12, and, in addition, six bmr …

Assessment Of Rice Self-Sufficiency In 2025 In Eight African Countries, P. A.J. Van Oort, K. Saito, E. Amovin-Assagba, Lenny G.J. Van Bussel, Justin Van Wart, Hugo De Groot, Martin K. Van Ittersum, Kenneth Cassman, M. C.S. Wopereis

Department of Agronomy and Horticulture: Faculty Publications

Most African countries are far from self-sufficient in meeting their rice consumption; in eight countries the production: consumption ratio, ranged from 0.16 to 1.18 in 2012. We show that for the year 2025, with population growth, diet change and yield increase on existing land (intensification), countries cannot become fully self-sufficient in rice. This implies that for the future, a mixture of area expansion and imports will be needed on top of yield gap closure. Further research is needed for identification of most suitable new land for rice area expansion and areas that should be protected.

Patch Burning: Implications On Water Erosion And Soil Properties, Altingul Ozaslan Parlak, Mehmet Parlak, Humberto Blanco-Canqui, Walter H. Schacht, John A. Guretzky, Martha Mamo

Department of Agronomy and Horticulture: Faculty Publications

Patch burning can be a potential management tool to create grassland heterogeneity and enhance forage productivity and plant biodiversity, but its impacts on soil and environment have not been widely documented. In summer 2013, we studied the effect of time after patch burning (4 mo after burning [recently burned patches], 16 mo after burning [older burned patches], and unburned patches [control]) on vegetative cover, water erosion, and soil properties on a patch-burn experiment established in 2011 on a Yutan silty clay loam near Mead, NE. The recently burned patches had 29 ± 8.0% (mean ± SD) more bare ground, 21 …

Presencia De Metales Pesados En La Reserva De La Biosfera Barranca De Metztitlán, Hidalgo, México, Irving Giovanny González-Salazar, Maritza López-Herrera, Scott Monks, Griselda Pulido-Flores

Estudios en Biodiversidad

La Reserva de la Biosfera Barranca de Metztitlán es un área natural protegida por la gran diversidad de flora y fauna existente en la misma. La zona es atravesada por un río de gran longitud que se extiende desde el municipio de Tulancingo hasta su desembocadura en la Laguna de Metztitlán, en la zona núcleo de la reserva. A lo largo del cauce del río se ubican algunos asentamientos humanos y zonas industriales, que vierten aguas residuales domésticas e industriales. Además, el agua del río es un recurso natural utilizado como agua de riego para las zonas agrícolas, que con …

Percepción De Calidad De Vida, Contaminación Y Riesgo En Localidades Rurales Del Municipio De Tecoanapa, Guerrero, Rocío López-Velasco, América Rodríguez-Herrera, Humberto González-González, Branly Olivier-Salomé, Consuelo Montalvo-Marques

Estudios en Biodiversidad

En el presente trabajo se realizó un análisis sobre la percepción de calidad de vida, contaminación y riesgo en nueve comunidades rurales del Municipio de Tecoanapa, Guerrero. Para ello, se seleccionaron nueve comunidades que cumplieran con tres aspectos: rezago social (muy alto, medio y muy bajo); ubicación (cerca de ríos); y vivencias en conflictos y embates ambientales. Se levantó una encuesta a jefes de familia en febrero de 2014. Registrando que el 70% de los habitantes afirmaron tener una buena calidad de vida. Al cuestionarlos sobre contaminación, el 59.9% consideró que si existe y está asociada al agua. El 52.0% …

Plantas Útiles De Tres Municipios (Metztitlán, Atotonilco El Grande Y Huasca De Ocampo) De La Reserva De La Biosfera Barranca De Metztitlán, Hidalgo, México, Miguel Ángel Villavicencio-Nieto, Blanca Estela Pérez-Escandón, Berenice N. López-Gutiérrez

Estudios en Biodiversidad

Existen muy pocos trabajos etnobotánicos realizados en la Reserva de la Biosfera Barranca de Metztitlán, por lo que el objetivo de este estudio fue generar un listado preliminar de plantas útiles de la Reserva. Se aplicaron entrevistas a habitantes de localidades ubicadas en la zona, para colectar las plantas útiles mencionadas se hicieron recorridos de campo en compañía de informantes, posteriormente las especies fueron identificadas con el uso de claves dicotómicas. Se registraron 83 especies de plantas útiles, distribuidas en 39 familias y 20 categorías de uso, siendo la medicinal la mejor representada por número de especies. Conocer el uso …

Transgenic Wheat Expressing A Barley Udp-Glucosyltransferase Detoxifies Deoxynivalenol And Provides High Levels Of Resistance To Fusarium Graminearum, Xi Li, Sanghyun Shin, Shane Heinen, Ruth Dill-Macky, Franz Berthiller, Natalya Nersesian, Thomas Clemente, Susan Mccormick, Gary J. Muehbauer

Department of Agronomy and Horticulture: Faculty Publications

Fusarium head blight (FHB), mainly caused by Fusarium graminearum, is a devastating disease of wheat that results in economic losses worldwide. During infection, F. graminearum produces trichothecene mycotoxins, including deoxynivalenol (DON), that increase fungal virulence and reduce grain quality. Transgenic wheat expressing a barley UDP-glucosyltransferase (HvUGT13248) were developed and evaluated for FHB resistance, DON accumulation, and the ability to metabolize DON to the less toxic DON-3-O-glucoside (D3G). Pointinoculation tests in the greenhouse showed that transgenic wheat carrying HvUGT13248 exhibited significantly higher resistance to disease spread in the spike (type II resistance) compared with nontransformed controls. Two transgenic …

Fall Seed Guide 2015, Teshome Regassa, P. Stephen Baenziger, Stephen N. Wegulo, Greg Kruger, Dipak K. Santra

Department of Agronomy and Horticulture: Faculty Publications

Crops included in this guide are winter wheat, winter barley, and triticale. You may receive this guide in the mail or through the University of Nebraska Extension network. The data and other information this guide is can be found at our web site: http://cropwatch.unl.edu/varietytest/ and http://www.unl.edu/ncia. Additional information is available at the wheat variety virtual tour web site http://cropwatch.unl.edu/wheat/virtual or the winter wheat variety selection tool page http:// citnews.unl.edu/winter_wheat_tool/index.shtml. The last season was hard on Nebraska winter wheat. Emergence was poor in the west due to dry conditions. On the other hand, some plots in the east had to be …

Model And Sensor-Based Recommendation Approaches For In-Season Nitrogen Management In Corn, L. J. Thompson, R. B. Ferguson, N. Kitchen, D. W. Frazen, M. Mamo, H. Yang, J. S. Schepers

Department of Agronomy and Horticulture: Faculty Publications

Nitrogen management for corn (Zea mays L.) may be improved by applying a portion of N in-season. This investigation was conducted to evaluate crop modeling (Maize-N) and active crop canopy sensing approaches for recommending in-season N fertilizer rates. These approaches were evaluated during 2012–2013 on 11 field sites, in Missouri, Nebraska, and North Dakota. Nitrogen management also included a no-N treatment (check) and a non-limiting N reference (all at planting). Nitrogen management treatments were assessed for two hybrids and at low and high seeding rates, arranged in a randomized complete block design. In 9 of 11 site-years, the sensor-based …

Potential For Crop Production Increase In Argentina Through Closure Of Existing Yield Gaps, Fernando Aramburu Merlos, Juan Pablo Monzon, Jorge L. Mercau, Miguel Taboada, Fernando H. Andrade, Antonio J. Hall, Esteban Jobbagy, Kenneth Cassman, Patricio Grassini

Department of Agronomy and Horticulture: Faculty Publications

Favorable climate and soils for rainfed crop production, together with a relatively low population density,results in 70–90% of Argentina grain production being exported. No assessment to date has tried to estimate the potential for extra grain production for soybean, wheat and maize, which account for 78%of total harvested area, by yield gap closure on existing cropland area and its impact at a global scale.The objectives of this paper are (i) to estimate how much additional grain could be produced without expanding crop area by closing yield gaps in Argentina, (ii) to investigate how this production and yield gaps varies across …

Plants Coping Abiotic And Biotic Stresses: A Tale Of Diligent Management, Hatem Rouached, Sikander Pal, Shimon Rachmilevitch, Marc Libault, Lam-Son Phan Tran

Department of Agronomy and Horticulture: Faculty Publications

Plants unlike other living forms are sessile thereby facing severe biotic and abiotic stresses. Plants have evolved different efficient defence responses which thrive upon a number of intrinsic factors, such as genotypic and phenotypic constitutions and developmental circumstances, and extrinsic factors like severity and duration of the stresses. Stress management uses molecular and biochemical level controls, the competence, and speed, at which a stress signal is perceived and transmitted to generate stress signal molecules and activate stress-protective mechanisms. A well-concerted action of the plants’ competence at morphological, physiological, biochemical, and molecular strata regulates numerous adaptive responses to biotic and abiotic …

Calibration And Validation Of The Hybrid-Maize Crop Model For Regional Analysis And Application Over The U.S. Corn Belt, Xing Liu, Jeff Andresen, Haishun Yang, Dev Niyogi

Department of Agronomy and Horticulture: Faculty Publications

Detailed parameter sensitivity, model validation, and regional calibration of the Hybrid-Maize crop model were undertaken for the purpose of regional agroclimatic assessments. The model was run at both field scale and county scale. The county-scale study was based on 30-yr daily weather data and corn yield data from the National Agricultural Statistics Service survey for 24 locations across the Corn Belt of the United States. The field-scale study was based on AmeriFlux sites at Bondville, Illinois, andMead, Nebraska. By using the one-at-a-time and interaction-explicit factorial design approaches for sensitivity analysis, the study found that the five most sensitive parameters of …

Identification Of Novel Qtl Governing Root Architectural Traits In An Interspecific Soybean Population, Lakshmi P. Manavalan, Silvas J. Prince, Theresa A. Musket, Julian Chaky, Rupesh Deshmukh, Tri D. Vuong, Li Song, Perry B. Cregan, James C. Nelson, J. Grover Shannon, James E. Specht, Henry T. Nguyen

Department of Agronomy and Horticulture: Faculty Publications

Cultivated soybean (Glycine max L.) cv. Dunbar (PI 552538) and wild G. soja (PI 326582A) exhibited significant differences in root architecture and root-related traits. In this study, phenotypic variability for root traits among 251 BC₂F₅ backcross inbred lines (BILs) developed from the cross Dunbar/PI 326582A were identified. The root systems of the parents and BILs were evaluated in controlled environmental conditions using a cone system at seedling stage. The G. max parent Dunbar contributed phenotypically favorable alleles at a major quantitative trait locus on chromosome 8 (Satt315-I locus) that governed root traits (tap root length and …

Genetic And Molecular Characterization Of Submergence Response Identifies Subtol6 As A Major Submergence Tolerance Locus In Maize, Malachy T. Campbell, Christopher A. Proctor, Yongchao Dou, Aaron J. Schmitz, Piyaporn Phansak, Greg R. Kruger, Chi Zhang, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

Maize is highly sensitive to short term flooding and submergence. Early season flooding reduces germination, survival and growth rate of maize seedlings. We aimed to discover genetic variation for submergence tolerance in maize and elucidate the genetic basis of submergence tolerance through transcriptional profiling and linkage analysis of contrasting genotypes. A diverse set of maize nested association mapping (NAM) founder lines were screened, and two highly tolerant (Mo18Wand M162W) and sensitive (B97 and B73) genotypes were identified. Tolerant lines exhibited delayed senescence and lower oxidative stress levels compared to sensitive lines. Transcriptome analysis was performed on these inbreds to provide …

Allmaps: Robust Scaffold Ordering Based On Multiple Maps, Haibo Tang, Xingtan Zhang, Chenyong Miao, Jisen Zhang, Ray Ming, James C. Schnable, Patrick S. Schnable, Eric Lyons, Jianguo Lu

Department of Agronomy and Horticulture: Faculty Publications

The ordering and orientation of genomic scaffolds to reconstruct chromosomes is an essential step during de novo genome assembly. Because this process utilizes various mapping techniques that each provides an independent line of evidence, a combination of multiple maps can improve the accuracy of the resulting chromosomal assemblies. We present ALLMAPS, a method capable of computing a scaffold ordering that maximizes colinearity across a collection of maps. ALLMAPS is robust against common mapping errors, and generates sequences that are maximally concordant with the input maps. ALLMAPS is a useful tool in building high-quality genome assemblies. ALLMAPS is available at: https://github.com/tanghaibao/jcvi/wiki/ALLMAPS.

Effects Of Sowing Date On Phenotypic Plasticity Of Fitness-Related Traits In Two Annual Weeds On The Songnen Plain Of China, Haiyan Li, John L. Lindquist, Yunfei Yang

Department of Agronomy and Horticulture: Faculty Publications

Background Phenotypic plasticity of fitness-related traits is vital for plant species to adapt to variable environments. Chenopodium glaucum L. and Amaranthus retroflexus L. are two common weed species globally. Understanding the plasticity in life-history traits, especially in reproductive allocation, within and among these species is important for predicting their success and for managing them in different environments.

Methodology/Principal Findings Seeds of the two plant species were sown every 10 days from 26 Jun to 15 Aug. Life-history and fitness-related traits of both phenology and morphology were measured, and dry biomass of roots, stems, leaves, and reproductive tissues was determined at …