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Articles 1351 - 1380 of 1637
Full-Text Articles in Botany
Application Of Machine Learning In Snp Discovery, Lakshmi K. Matukumalli, John J. Grefenstette, David L. Hyten, Ik-Young Choi, Perry B. Cregan, Curtis P. Van Tassell
Application Of Machine Learning In Snp Discovery, Lakshmi K. Matukumalli, John J. Grefenstette, David L. Hyten, Ik-Young Choi, Perry B. Cregan, Curtis P. Van Tassell
Department of Agronomy and Horticulture: Faculty Publications
Background: Single nucleotide polymorphisms (SNP) constitute more than 90% of the genetic variation, and hence can account for most trait differences among individuals in a given species. Polymorphism detection software PolyBayes and PolyPhred give high false positive SNP predictions even with stringent parameter values. We developed a machine learning (ML) method to augment PolyBayes to improve its prediction accuracy. ML methods have also been successfully applied to other bioinformatics problems in predicting genes, promoters, transcription factor binding sites and protein structures. Results: The ML program C4.5 was applied to a set of features in order to build a SNP classifier …
Discovery: The Student Journal Of Dale Bumpers College Of Agricultural, Food And Life Sciences - Volume 7 2006, Several Authors
Discovery: The Student Journal Of Dale Bumpers College Of Agricultural, Food And Life Sciences - Volume 7 2006, Several Authors
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Infiltration And Short-Term Movement Of Nitrogen In A Silt-Loam Soil Typical Of Rice Cultivation In Arkansas, Lindsay M. Copenhaver, Mary C. Savin, David M. Miller, Peter J. Tomlinson, Kristofor R. Brye, Richard J. Norman
Infiltration And Short-Term Movement Of Nitrogen In A Silt-Loam Soil Typical Of Rice Cultivation In Arkansas, Lindsay M. Copenhaver, Mary C. Savin, David M. Miller, Peter J. Tomlinson, Kristofor R. Brye, Richard J. Norman
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
Rice production in Arkansas is one of the top three crop commodities in terms of cash receipts. Researchers and farmers report that nitrogen (N) needs to be managed according to a variety of factors with two important ones being soil and fertilizer type. The objectives of this experiment were to determine: 1) the degree to which floodwater-incorporated N applied as urea or as ammonium sulfate infiltrates intact cores (7.2-cm dia., 10-cm depth) containing DeWitt silt-loam soil, and 2) the distribution of N during 12 h of ponding. Inorganic-N concentrations were analyzed at 2-cm depth intervals in cores following removal of …
Instructions For Authors, Discovery Editors
Instructions For Authors, Discovery Editors
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Contents, Discovery Editors
Contents, Discovery Editors
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Chemical Composition And Response To Dilute-Acid Pretreatment And Enzymatic Saccharification Of Alfalfa, Reed Canarygrass, And Switchgrass, Bruce S. Dien, Hans-Joachim G. Jung, Kenneth P. Vogel, Michael D. Casler, Joann F. S. Lamb, Loren Iten, Robert C. Mitchell, Gautum Sarath
Chemical Composition And Response To Dilute-Acid Pretreatment And Enzymatic Saccharification Of Alfalfa, Reed Canarygrass, And Switchgrass, Bruce S. Dien, Hans-Joachim G. Jung, Kenneth P. Vogel, Michael D. Casler, Joann F. S. Lamb, Loren Iten, Robert C. Mitchell, Gautum Sarath
Department of Agronomy and Horticulture: Faculty Publications
Alfalfa stems, reed canarygrass, and switchgrass; perennial herbaceous species that have potential as biomass energy crops in temperate regions; were evaluated for their bioconversion potential as energy crops. Each forage species was harvested at two or three maturity stages and analyzed for carbohydrates, lignin, protein, lipid, organic acids, and mineral composition. The biomass samples were also evaluated for sugar yields following pretreatment with dilute sulfuric followed by enzymatic saccharification using a commercial cellulase preparation. Total carbohydrate content of the plants varied from 518 to 655 g kg-1 dry matter (DM) and cellulose concentration from 209 to 322 g kg …
Mutations In Arabidopsis Yellow Stripe-Like1 And Yellow Stripe-Like3 Reveal Their Roles In Metal Ion Homeostasis And Loading Of Metal Ions In Seeds, Brian M. Waters, Heng-Hsuan Chu, Raymond J. Didonato, Louis A. Roberts, Robynn B. Eisley, Brett Lahner, David E. Salt, Elsbeth L. Walker
Mutations In Arabidopsis Yellow Stripe-Like1 And Yellow Stripe-Like3 Reveal Their Roles In Metal Ion Homeostasis And Loading Of Metal Ions In Seeds, Brian M. Waters, Heng-Hsuan Chu, Raymond J. Didonato, Louis A. Roberts, Robynn B. Eisley, Brett Lahner, David E. Salt, Elsbeth L. Walker
Department of Agronomy and Horticulture: Faculty Publications
Here, we describe two members of the Arabidopsis (Arabidopsis thaliana) Yellow Stripe-Like (YSL) family, AtYSL1 and AtYSL3. The YSL1 and YSL3 proteins are members of the oligopeptide transporter family and are predicted to be integral membrane proteins. YSL1 and YSL3 are similar to the maize (Zea mays) YS1 phytosiderophore transporter (ZmYS1) and the AtYSL2 iron (Fe)-nicotianamine transporter, and are predicted to transport metal-nicotianamine complexes into cells. YSL1 and YSL3 mRNAs are expressed in both root and shoot tissues, and both are regulated in response to the Fe status of the plant. β-Glucuronidase reporter expression, driven by …
Pineywoods Native Plant Center, Winter 2006, Sfa Gardens, Stephen F. Austin State University
Pineywoods Native Plant Center, Winter 2006, Sfa Gardens, Stephen F. Austin State University
SFA Gardens Newsletters
No abstract provided.
Sfa Gardens Newsletter, Jan 2006, Sfa Gardens, Stephen F. Austin State University
Sfa Gardens Newsletter, Jan 2006, Sfa Gardens, Stephen F. Austin State University
SFA Gardens Newsletters
No abstract provided.
Soybean Cultivars Resulted From More Recombination Events Than Unselected Lines In The Same Population, T. R. Stefaniak, D. L. Hyten Jr., V. R. Pantalone, A. Klarer, T. W. Pfeiffer
Soybean Cultivars Resulted From More Recombination Events Than Unselected Lines In The Same Population, T. R. Stefaniak, D. L. Hyten Jr., V. R. Pantalone, A. Klarer, T. W. Pfeiffer
Department of Agronomy and Horticulture: Faculty Publications
The selection of superior adapted cultivars has contributed to the doubling of soybean [Glycine max (L.) Merr.] yields in the USA since 1930. Genetic variation was required for this selection to be effective. The objective of this study was to evaluate the importance of homologous chromosome meiotic recombination in the creation of soybean cultivars. A set of 10 adapted high-yielding cultivars selected from the cross ‘Williams’ × ‘Essex’ was com-pared with a set of 156 random recombinant inbred lines (RILs) from the same population. Crossover events were identified using 143 simple sequence repeat (SSR) markers span-ning all 20 soybean …
Impacts Of Genetic Bottlenecks On Soybean Genome Diversity, D. L. Hyten, Qijian Song, Youlin Zhu, Ik-Young Choi, Randall L. Nelson, Jose M. Costa, James E. Specht, Randy C. Shoemaker, Perry B. Cregan
Impacts Of Genetic Bottlenecks On Soybean Genome Diversity, D. L. Hyten, Qijian Song, Youlin Zhu, Ik-Young Choi, Randall L. Nelson, Jose M. Costa, James E. Specht, Randy C. Shoemaker, Perry B. Cregan
Department of Agronomy and Horticulture: Faculty Publications
Soybean has undergone several genetic bottlenecks. These include domestication in Asia to produce numerous Asian landraces, introduction of relatively few landraces to North America, and then selective breeding over the past 75 years. It is presumed that these three human-mediated events have reduced genetic diversity. We sequenced 111 fragments from 102 genes in four soybean populations representing the populations before and after genetic bottlenecks. We show that soybean has lost many rare sequence variants and has undergone numerous allele frequency changes throughout its history. Although soybean genetic diversity has been eroded by human selection after domestication, it is notable that …
Ethylene Could Influence Ferric Reductase, Iron Transporter, And H+-Atpase Gene Expression By Affecting Fer (Or Fer-Like) Gene Activity, Carlos Lucera, Brian M. Waters, Francisco Javier Romera, María José García, María Morales, Esteban Alcántara, Rafael Pérez-Vicente
Ethylene Could Influence Ferric Reductase, Iron Transporter, And H+-Atpase Gene Expression By Affecting Fer (Or Fer-Like) Gene Activity, Carlos Lucera, Brian M. Waters, Francisco Javier Romera, María José García, María Morales, Esteban Alcántara, Rafael Pérez-Vicente
Department of Agronomy and Horticulture: Faculty Publications
In previous works, it has been shown, by using ethylene inhibitors and precursors, that ethylene could participate in the regulation of the enhanced ferric reductase activity of Fe-deficient Strategy I plants. However, it was not known whether ethylene regulates the ferric reductase gene expression or other aspects related to this activity. This paper is a study of the effects of ethylene inhibitors and precursors on the expression of the genes encoding the ferric reductases and iron transporters of Arabidopsis thaliana (FRO2 and IRT1) and Lycopersicon esculentum (= Solanum lycopersicum) (FRO1 and IRT1) plants. The effects …
Pineywoods Native Plant Center, Nov 2005, Sfa Gardens, Stephen F. Austin State University
Pineywoods Native Plant Center, Nov 2005, Sfa Gardens, Stephen F. Austin State University
SFA Gardens Newsletters
No abstract provided.
Summaries Of Arkansas Cotton Research 2004, Derrick M. Oosterhuis
Summaries Of Arkansas Cotton Research 2004, Derrick M. Oosterhuis
Arkansas Agricultural Experiment Station Research Series
No abstract provided.
Managing Glyphosate-Resistant Horseweed In Arkansas Cotton 2004, Ronald E. Talbert, Marilyn R. Mcclelland, James L. Barrentine, Kenneth L. Smith, Monica B. Kelley
Managing Glyphosate-Resistant Horseweed In Arkansas Cotton 2004, Ronald E. Talbert, Marilyn R. Mcclelland, James L. Barrentine, Kenneth L. Smith, Monica B. Kelley
Arkansas Agricultural Experiment Station Research Series
No abstract provided.
Pineywoods Native Plant Center, Sept 2005, Sfa Gardens, Stephen F. Austin State University
Pineywoods Native Plant Center, Sept 2005, Sfa Gardens, Stephen F. Austin State University
SFA Gardens Newsletters
No abstract provided.
B.R. Wells Rice Research Studies 2004, R. J. Norman, J. F. Meullenet, K. A.K. Moldenhauer
B.R. Wells Rice Research Studies 2004, R. J. Norman, J. F. Meullenet, K. A.K. Moldenhauer
Arkansas Agricultural Experiment Station Research Series
No abstract provided.
Pineywoods Native Plant Center, July 2005, Sfa Gardens, Stephen F. Austin State University
Pineywoods Native Plant Center, July 2005, Sfa Gardens, Stephen F. Austin State University
SFA Gardens Newsletters
No abstract provided.
Arkansas Small-Grain Cultivar Performance Tests 2004-2005, J. T. Kelly, C. E. Parsons, R. K. Bacon
Arkansas Small-Grain Cultivar Performance Tests 2004-2005, J. T. Kelly, C. E. Parsons, R. K. Bacon
Arkansas Agricultural Experiment Station Research Series
Small-grain cultivar performance tests are conducted each year in Arkansas by the Arkansas Agricultural Experiment Station, Department of Crop, Soil and Environmental Sciences. The tests provide information to companies developing cultivars and/or marketing seed within the state and aid the Arkansas Cooperative Extension Service in formulating cultivar recommendations for smallgrain producers.
Pineywoods Native Plant Center, May 2005, Sfa Gardens, Stephen F. Austin State University
Pineywoods Native Plant Center, May 2005, Sfa Gardens, Stephen F. Austin State University
SFA Gardens Newsletters
No abstract provided.
Field Evaluation Of Herbicides On Vegetables And Small Fruits 2004, Ronald E. Talbert, Colleen M. Thomas, Brian V. Ottis, Andrew T. Ellis
Field Evaluation Of Herbicides On Vegetables And Small Fruits 2004, Ronald E. Talbert, Colleen M. Thomas, Brian V. Ottis, Andrew T. Ellis
Arkansas Agricultural Experiment Station Research Series
Herbicide evaluation studies on vegetables and small fruits were conducted in 2004 at the Arkansas Agricultural Experiment Station at Fayetteville, AR, in an effort to evaluate new herbicides, herbicide mixtures, and their application timings for weed control efficacy and crop tolerance. Results of these studies, in part, provide useful information to producers, fellow researchers, the Crop Protection Industry, and the IR-4 Minor Crop Pest Management Program in the development of potential new herbicide uses in vegetable, and fruit.
Field Evaluation Of Herbicides On Rice 2004, Brian V. Ottis, Ronald E. Talbert, Andrew T. Ellis
Field Evaluation Of Herbicides On Rice 2004, Brian V. Ottis, Ronald E. Talbert, Andrew T. Ellis
Arkansas Agricultural Experiment Station Research Series
Herbicide evaluation studies on rice were conducted in 2004 at the Rice Research and Extension Center near Stuttgart, AR, in an effort to evaluate new herbicides, herbicide mixtures, and their application timings for weed control and crop tolerance. Results of these studies, in part, provide useful information to producers, fellow researchers, and the Crop Protection Industry for the potential use of new herbicide programs for successful rice production in Arkansas.
Arkansas Cotton Variety Test 2004, Fred M. Bourland, B. S. Brown, J. M. Hornbeck, R. C. Doherty, W. C. Robertson
Arkansas Cotton Variety Test 2004, Fred M. Bourland, B. S. Brown, J. M. Hornbeck, R. C. Doherty, W. C. Robertson
Arkansas Agricultural Experiment Station Research Series
The primary aim of the Arkansas Cotton Variety Test is to provide unbiased data regarding the agronomic performance of cotton varieties and advanced breeding lines in the major cotton-growing areas of Arkansas. This information helps seed dealers establish marketing strategies and assists producers in choosing varieties to plant.
Pineywoods Native Plant Center, Feb 2005, Sfa Gardens, Stephen F. Austin State University
Pineywoods Native Plant Center, Feb 2005, Sfa Gardens, Stephen F. Austin State University
SFA Gardens Newsletters
No abstract provided.
Discovery: The Student Journal Of Dale Bumpers College Of Agricultural, Food And Life Sciences - Volume 6 2005, Several Authors
Discovery: The Student Journal Of Dale Bumpers College Of Agricultural, Food And Life Sciences - Volume 6 2005, Several Authors
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Letter From The Dean, Gregory J. Weidemann
Letter From The Dean, Gregory J. Weidemann
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Contents, Discovery Editors
Contents, Discovery Editors
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Instructions For Authors, Discovery Editors
Instructions For Authors, Discovery Editors
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Effect Of Control Plot Density, Control Plot Arrangement, And Assumption Of Random Or Fixed Effects On Nonreplicated Experiments For Germplasm Screening Using Spatial Models, Boi Sebolai, Jeffrey F. Pedersen, D. B. Marx, D. L. Boykin
Effect Of Control Plot Density, Control Plot Arrangement, And Assumption Of Random Or Fixed Effects On Nonreplicated Experiments For Germplasm Screening Using Spatial Models, Boi Sebolai, Jeffrey F. Pedersen, D. B. Marx, D. L. Boykin
Department of Agronomy and Horticulture: Faculty Publications
Early generation selection experiments typically involve several hundred to thousands of lines. Various systematic and statistical techniques have been developed to increase effectiveness and efficiencies in such experiments, including the development and application of spatial statistical models. In this study, mixed model equations were used to provide least squares means (LSMEANs) and best linear unbiased predictors (BLUPs) and compare selection effectiveness and efficiencies to observed (Y) and true values in simulated experiments varying in size (10 X 10, 20 X 20 and 30 X 30 grids), control plots densities (0, 5, 10, 20, and 50%), control plot arrangements (high, medium, …
Pineywoods Native Plant Center News, December 2004, Sfa Gardens, Stephen F. Austin State University
Pineywoods Native Plant Center News, December 2004, Sfa Gardens, Stephen F. Austin State University
SFA Gardens Newsletters
No abstract provided.